View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20685_low_10 (Length: 499)

Name: NF20685_low_10
Description: NF20685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20685_low_10
NF20685_low_10
[»] chr2 (4 HSPs)
chr2 (18-490)||(3217964-3218437)
chr2 (295-433)||(25951601-25951739)
chr2 (81-146)||(25951367-25951432)
chr2 (18-103)||(25951276-25951367)
[»] chr3 (5 HSPs)
chr3 (18-430)||(1850150-1850583)
chr3 (18-144)||(37236447-37236573)
chr3 (259-433)||(37236708-37236883)
chr3 (24-103)||(31237509-31237588)
chr3 (81-147)||(31237443-31237509)
[»] chr7 (4 HSPs)
chr7 (257-435)||(11595519-11595702)
chr7 (18-129)||(21979634-21979742)
chr7 (18-129)||(13956872-13956982)
chr7 (18-129)||(36497499-36497609)
[»] chr8 (3 HSPs)
chr8 (18-181)||(21661890-21662053)
chr8 (18-129)||(38965622-38965732)
chr8 (18-129)||(15554111-15554221)
[»] chr4 (7 HSPs)
chr4 (18-148)||(32415006-32415134)
chr4 (18-148)||(32416154-32416281)
chr4 (18-129)||(12581634-12581745)
chr4 (19-129)||(47981257-47981367)
chr4 (305-430)||(32415319-32415444)
chr4 (306-430)||(32415839-32415963)
chr4 (18-105)||(3888118-3888204)
[»] chr1 (5 HSPs)
chr1 (259-433)||(43861038-43861213)
chr1 (18-103)||(17176960-17177045)
chr1 (24-103)||(43861414-43861493)
chr1 (257-405)||(17176613-17176762)
chr1 (81-147)||(43861348-43861414)
[»] chr6 (6 HSPs)
chr6 (295-432)||(6046046-6046183)
chr6 (350-430)||(3738247-3738327)
chr6 (18-103)||(6046415-6046500)
chr6 (18-106)||(7704557-7704645)
chr6 (18-105)||(12112997-12113083)
chr6 (344-430)||(7704881-7704967)
[»] chr5 (2 HSPs)
chr5 (18-129)||(24358528-24358638)
chr5 (18-129)||(24321904-24322013)


Alignment Details
Target: chr2 (Bit Score: 417; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 18 - 490
Target Start/End: Complemental strand, 3218437 - 3217964
Alignment:
Q  18 ccatgatttatgggtgtattggaaaatttccctaattattgatagtggctttattgggaagattttcaatagtcaatgggtttaatgagggaatttgaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3218437 ccatgatttatgggtgtattggaaaatttccctaattattgatagtggctttattgggaagattttcaatagtcaatgggtttaatgagggaatttgaaa 3218338  T
Q  118 ccgtttcagagaaagagaagagtgaaacacgnnnnnnn-gccgttctgatagcaaaaatgcatttttggcgatgtgggtcatgaacccgacccgaaagat 216  Q
    |||||||||||||| ||||||||||||||||        ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3218337 ccgtttcagagaaaaagaagagtgaaacacgttttttttgcctttctgatagcaaaaatgcatttttggcgatgtgggtcatgaacccgacccgaaagat 3218238  T
Q  217 ccggatttctggaaagcgaaacaataaacgggtctctttcctgggtttcaaaactaactcgtttggatcaacgattccaacgcgtttacgtttttcaact 316  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3218237 ccggatttctggaaagcgaaacattaaacgggtctctttcctgggtttcaaaactaactcgtttggatcaacgattccaacgcgtttacgtttttcaact 3218138  T
Q  317 acgatccaatccgcgaccgccaaaaaccgatttcgacgactttccggcacagcgaggggatgtgagatcgtgaactcggacgatcctacgagttggatcg 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3218137 acgatccaatccgcgaccgccaaaaaccgatttcgacgactttccggcacggcgaggggatgtgagatcgtgaactcggacgatcctacgagttggatcg 3218038  T
Q  417 caagtttgtctaccatgctttctagtgtatcaaattttttatctatcacattacacagtagtcctatttcttct 490  Q
    | ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3218037 cgagtttgtctaccatgctttcttgtgtatcaaatttgttatctatcacattacacagtagtcctatttcttct 3217964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 295 - 433
Target Start/End: Original strand, 25951601 - 25951739
Alignment:
Q  295 aacgcgtttacgtttttcaactacgatccaatccgcgaccgccaaaaaccgatttcgacgactttccggcacagcgaggggatgtgagatcgtgaactcg 394  Q
    ||||||||| |||||||||||  |||||||| |||||||| ||||||| ||||| | ||||| |||  |||| | ||||||||||||||||| |||||||    
T  25951601 aacgcgtttgcgtttttcaacggcgatccaaaccgcgaccaccaaaaagcgattccaacgacattctagcacggtgaggggatgtgagatcgcgaactcg 25951700  T
Q  395 gacgatcctacgagttggatcgcaagtttgtctaccatg 433  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  25951701 gacgatcctacgagttggatcgcgagtttgtctaccatg 25951739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 81 - 146
Target Start/End: Original strand, 25951367 - 25951432
Alignment:
Q  81 tttcaatagtcaatgggtttaatgagggaatttgaaaccgtttcagagaaagagaagagtgaaaca 146  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||  | ||||||||||||    
T  25951367 tttcaataatcaatgggtttaatgagggaattagaaaccgtttcagagaataataagagtgaaaca 25951432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 25951276 - 25951367
Alignment:
Q  18 ccatgatttatgggtgtattggaaaatttc------cctaattattgatagtggctttattgggaagattttcaatagtcaatgggtttaat 103  Q
    ||||||||||||| ||||||||||||||||      | |||||||||||||| | | |||||||||||||| ||||| | ||||||||||||    
T  25951276 ccatgatttatggatgtattggaaaatttcaatttccttaattattgatagtaggtgtattgggaagatttgcaataattaatgggtttaat 25951367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 430
Target Start/End: Complemental strand, 1850583 - 1850150
Alignment:
Q  18 ccatgatttatgggtgtattggaaaatttccctaattattgatagtggctttattgggaagattttcaatagtcaatgggtttaatgagggaatttgaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1850583 ccatgatttatgggtgtattggaaaatttccctaattattgatagtgtctttattgggaagattttcaataatcaatgggtttaatgagggaatttgaaa 1850484  T
Q  118 ccgtttcagagaaagagaagagtgaaacacgnnnnnnn-gccgttctgatagcaaaaatgcatttttggcgatgtgggtcatgaacccgacccgaaagat 216  Q
    |||||||||||||| ||||||||||||||||        ||| |||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||    
T  1850483 ccgtttcagagaaaaagaagagtgaaacacgttttttttgcctttctgatagcaaaaatgcatttttggcgatgtgggtcacgaatccgacccaaaagat 1850384  T
Q  217 ccggatttctggaaagcgaaacaataaacgggtctc--------------------tttcctgggtttcaaaactaactcgtttggatcaacgattccaa 296  Q
    |  |||||||| |||||||| ||  ||||||||| |                    |||||||||||||||||||||||||| |||||| ||||| ||||    
T  1850383 caagatttctgtaaagcgaagcaccaaacgggtcacgaactgacccgtgaacccggtttcctgggtttcaaaactaactcgtctggatctacgataccaa 1850284  T
Q  297 cgcgtttacgtttttcaactacgatccaatccgcgaccgccaaaaaccgatttcgacgactttccggcacagcgaggggatgtgagatcgtgaactcgga 396  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||  ||| ||||||| |||| |||||||||||||||||||||||||||||    
T  1850283 cgcgtttacgtttttcaactacgatccaatccgcgaccaccaaaaaccgattctgacaactttccagcacggcgaggggatgtgagatcgtgaactcgga 1850184  T
Q  397 cgatcctacgagttggatcgcaagtttgtctacc 430  Q
    ||||||||||||||||||||| ||||||||||||    
T  1850183 cgatcctacgagttggatcgcgagtttgtctacc 1850150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 18 - 144
Target Start/End: Original strand, 37236447 - 37236573
Alignment:
Q  18 ccatgatttatgggtgtattggaaaatttccctaattattgatagtggctttattgggaagattttcaatagtcaatgggtttaatgagggaatttgaaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  37236447 ccatgatttatgggtgtattggaaaatttccctaattattgatagtaggtgtattgggaagattttcaataatcaatgggtttaatgagggaattagaaa 37236546  T
Q  118 ccgtttcagagaaagagaagagtgaaa 144  Q
    |||||||||||||  | ||||||||||    
T  37236547 ccgtttcagagaataataagagtgaaa 37236573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 259 - 433
Target Start/End: Original strand, 37236708 - 37236883
Alignment:
Q  259 gggtttcaaaactaactcgtttggatca-acgattccaacgcgtttacgtttttcaactacgatccaatccgcgaccgccaaaaaccgatttcgacgact 357  Q
    ||||||||||| | |||||| || |||  ||||| | ||||||||| |||||||||||  |||||||| |||| ||| ||||||| ||||| |||||||     
T  37236708 gggtttcaaaattgactcgtctgaatcgtacgatacaaacgcgtttgcgtttttcaacggcgatccaaaccgcaaccaccaaaaagcgattccgacgacg 37236807  T
Q  358 ttccggcacagcgaggggatgtgagatcgtgaactcggacgatcctacgagttggatcgcaagtttgtctaccatg 433  Q
    ||| ||||| ||||||||||||||||| | ||||||| |||||||||||||||||||||| |||||||||||||||    
T  37236808 ttctggcacggcgaggggatgtgagattgcgaactcgaacgatcctacgagttggatcgcgagtttgtctaccatg 37236883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 31237588 - 31237509
Alignment:
Q  24 tttatgggtgtattggaaaatttccctaattattgatagtggctttattgggaagattttcaatagtcaatgggtttaat 103  Q
    |||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||| | ||||||||||||    
T  31237588 tttatgggtgtattggaaaatttccctaattattgatagtaggtgtattgggaagattttcaataattaatgggtttaat 31237509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 81 - 147
Target Start/End: Complemental strand, 31237509 - 31237443
Alignment:
Q  81 tttcaatagtcaatgggtttaatgagggaatttgaaaccgtttcagagaaagagaagagtgaaacac 147  Q
    ||||||||  |||||||||||||||||||||| |||||||||||||||||  | |||||||||||||    
T  31237509 tttcaataaccaatgggtttaatgagggaattagaaaccgtttcagagaataataagagtgaaacac 31237443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 257 - 435
Target Start/End: Original strand, 11595519 - 11595702
Alignment:
Q  257 ctgggtttcaaaactaactcgtttggatcaacgattccaacgcgtttacgtttttcaactacgatccaatccgcgaccgccaaaaaccgatttcgacgac 356  Q
    ||||||||||| |||||||||| |||||| ||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  11595519 ctgggtttcaacactaactcgtctggatctacgataccaatgcgtttacgtttttcaactacgatccaatccgcgaccaccaaaaaccgatttcgacgac 11595618  T
Q  357 tttccggcacagc-----gaggggatgtgagatcgtgaactcggacgatcctacgagttggatcgcaagtttgtctaccatgct 435  Q
    |||||||||| ||     || |||||||||| ||||||||||||||||||||||||||||||| |  |||||||||||| ||||    
T  11595619 tttccggcacggcacggcgatgggatgtgagttcgtgaactcggacgatcctacgagttggattgtgagtttgtctaccttgct 11595702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 21979742 - 21979634
Alignment:
Q  18 ccatgatttatgggtgtattggaaaatttccctaattattgatagtggctttattgggaagattttcaatagtcaatgggtttaatgagggaatttgaaa 117  Q
    ||||||||||||||| ||||||||||||||||||||||||   ||||||| |||||||||||| ||||||| ||||||||||||||||  | ||||||||    
T  21979742 ccatgatttatgggtttattggaaaatttccctaattatt---agtggctgtattgggaagatcttcaataatcaatgggtttaatgataggatttgaaa 21979646  T
Q  118 ccgtttcagaga 129  Q
    |||||| |||||    
T  21979645 ccgtttaagaga 21979634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 13956872 - 13956982
Alignment:
Q  18 ccatgatttatgggtgtattggaaaatttccctaattattgatagtggctttattgggaagattttcaatagtcaatgggtttaatgagggaatttgaaa 117  Q
    |||||||| |||||| |||||||||||| ||||||||||||||||||| | |||||||||||| ||||||| ||||||||||||||||  | ||||||||    
T  13956872 ccatgattaatgggtttattggaaaattaccctaattattgatagtgg-tatattgggaagatcttcaataatcaatgggtttaatgataggatttgaaa 13956970  T
Q  118 ccgtttcagaga 129  Q
    |||||| |||||    
T  13956971 ccgttttagaga 13956982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 36497609 - 36497499
Alignment:
Q  18 ccatgatttatgggtgtattggaaaatttccctaattattgatagtggctttattgggaagattttcaatagtcaatgggtttaatgagggaatttgaaa 117  Q
    |||||||| |||||| |||||||||||| ||||||||||||||||||| | |||||||||||| ||||||| ||||||||||||||||  | ||||||||    
T  36497609 ccatgattaatgggtttattggaaaattaccctaattattgatagtgg-tatattgggaagatcttcaataatcaatgggtttaatgataggatttgaaa 36497511  T
Q  118 ccgtttcagaga 129  Q
    | |||| |||||    
T  36497510 cagttttagaga 36497499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 18 - 181
Target Start/End: Complemental strand, 21662053 - 21661890
Alignment:
Q  18 ccatgatttatgggtgtattggaaaatttccctaattattgatagtggctttattgggaagattttcaatagtcaatgggtttaatgagggaatttgaaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||  ||||    
T  21662053 ccatgatttatgggtgtattggaaaatttccctaattattgatagtgggtgtattgggaagattttcaataatcaatgggtttaatgagggaatcagaaa 21661954  T
Q  118 ccgtttcagagaaagagaagagtgaaacacgnnnnnnngccgttctgatagcaaaaatgcattt 181  Q
    |||||||||||||  | |||||| |||||||       ||| ||||||| ||||||||||||||    
T  21661953 ccgtttcagagaataataagagtaaaacacgtttttttgcctttctgattgcaaaaatgcattt 21661890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 38965732 - 38965622
Alignment:
Q  18 ccatgatttatgggtgtattggaaaatttccctaattattgatagtggctttattgggaagattttcaatagtcaatgggtttaatgagggaatttgaaa 117  Q
    |||||||| |||||| |||||||||||| ||||||||||||||||||| | |||||||||||| ||||||| ||||||||||||||||  | ||||||||    
T  38965732 ccatgattaatgggtttattggaaaattaccctaattattgatagtgg-tatattgggaagatcttcaataatcaatgggtttaatgataggatttgaaa 38965634  T
Q  118 ccgtttcagaga 129  Q
    |||||| |||||    
T  38965633 ccgttttagaga 38965622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 15554221 - 15554111
Alignment:
Q  18 ccatgatttatgggtgtattggaaaatttccctaattattgatagtggctttattgggaagattttcaatagtcaatgggtttaatgagggaatttgaaa 117  Q
    |||||||| |||||| ||||||||||||  |||||||||||||||||| | |||||||||||| ||||||| ||||||||||||||||  | ||||||||    
T  15554221 ccatgattgatgggtttattggaaaattagcctaattattgatagtgg-tatattgggaagatcttcaataatcaatgggtttaatgataggatttgaaa 15554123  T
Q  118 ccgtttcagaga 129  Q
    | |||| |||||    
T  15554122 cagttttagaga 15554111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 32415006 - 32415134
Alignment:
Q  18 ccatgatttatgggtgtattggaaaatttccctaattattgatagtggctttattgggaagattttcaatagtcaatgggtttaatgagggaatttgaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||| ||||||||||  ||||||||||    
T  32415006 ccatgatttatgggtgtattggaaaatttccctaattattgatagtggctttattggaaagattttcagtaatcaattggtttaatga--gaatttgaaa 32415103  T
Q  118 ccgtttcagagaaagagaagagtgaaacacg 148  Q
    | |||||||| ||  ||||||||||| ||||    
T  32415104 ctgtttcagaaaattagaagagtgaatcacg 32415134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 32416281 - 32416154
Alignment:
Q  18 ccatgatttatgggtgtattggaaaatttccctaattattgatagtggctttattgggaagattttcaatagtcaatgggtttaatgagggaatttgaaa 117  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||| || ||||| ||||||||||  ||||||||||    
T  32416281 ccatgatttatgggtgtcttggaaaatttccctaattattgatagt-gctttattggaaagattttcagtaatcaattggtttaatga--gaatttgaaa 32416185  T
Q  118 ccgtttcagagaaagagaagagtgaaacacg 148  Q
    |||||||||| ||  ||||||||||||||||    
T  32416184 ccgtttcagaaaattagaagagtgaaacacg 32416154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 12581745 - 12581634
Alignment:
Q  18 ccatgatttatgggtgtattggaaaatttccctaattattgatagtggctttattgggaagattttcaatagtcaatgggtttaatgagggaatttgaaa 117  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||| | |||||||||||| ||||||| |||||| |||||||||  | ||||||||    
T  12581745 ccatgatttatgggtttattgaaaaatttccctaattattgatagtggttgtattgggaagatcttcaataatcaatgagtttaatgataggatttgaaa 12581646  T
Q  118 ccgtttcagaga 129  Q
    |||||| |||||    
T  12581645 ccgtttaagaga 12581634  T

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Target: chr4; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 47981367 - 47981257
Alignment:
Q  19 catgatttatgggtgtattggaaaatttccctaattattgatagtggctttattgggaagattttcaatagtcaatgggtttaatgagggaatttgaaac 118  Q
    |||||||||||||| |||||||||||||||||||||||||| |||| || |||| ||||||| ||||||| ||||||||||||||||  | ||||||| |    
T  47981367 catgatttatgggtttattggaaaatttccctaattattgacagtgactgtattaggaagatcttcaataatcaatgggtttaatgataggatttgaatc 47981268  T
Q  119 cgtttcagaga 129  Q
    ||||| |||||    
T  47981267 cgtttaagaga 47981257  T

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Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 305 - 430
Target Start/End: Original strand, 32415319 - 32415444
Alignment:
Q  305 cgtttttcaactacgatccaatccgcgaccgccaaaaaccgatttcgacgactttccggcacagcgaggggatgtgagatcgtgaactcggacgatccta 404  Q
    |||||||||||  |||||||| |||||||| ||||   |||||| ||||||||||||||||| || || ||| || ||||||  ||||||||||||||||    
T  32415319 cgtttttcaacggcgatccaaaccgcgaccaccaatttccgattccgacgactttccggcacggcaagaggaggtcagatcgcaaactcggacgatccta 32415418  T
Q  405 cgagttggatcgcaagtttgtctacc 430  Q
    ||||||||||||| ||||||||||||    
T  32415419 cgagttggatcgcgagtttgtctacc 32415444  T

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Target: chr4; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 306 - 430
Target Start/End: Complemental strand, 32415963 - 32415839
Alignment:
Q  306 gtttttcaactacgatccaatccgcgaccgccaaaaaccgatttcgacgactttccggcacagcgaggggatgtgagatcgtgaactcggacgatcctac 405  Q
    ||||||||||  |||||||| || ||||| ||||   |||||| ||||||||||||||||| || |||||| || ||||||  |||||||||||||||||    
T  32415963 gtttttcaacggcgatccaaacctcgaccaccaatttccgattccgacgactttccggcacggcaaggggaggttagatcgcaaactcggacgatcctac 32415864  T
Q  406 gagttggatcgcaagtttgtctacc 430  Q
    |||||||||||| ||||||||||||    
T  32415863 gagttggatcgcgagtttgtctacc 32415839  T

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Target: chr4; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 3888118 - 3888204
Alignment:
Q  18 ccatgatttatgggtgtattggaaaatttccctaattattgatagtggctttattgggaagattttcaatagtcaatgggtttaatga 105  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||  |||||| ||||||||||||||||    
T  3888118 ccatgatttatgggtttattg-aaaatttccctaattattgatagtggctgtattgggaagatcgtcaataatcaatgggtttaatga 3888204  T

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Target: chr1 (Bit Score: 84; Significance: 1e-39; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 259 - 433
Target Start/End: Complemental strand, 43861213 - 43861038
Alignment:
Q  259 gggtttcaaaactaactcgtttggatca-acgattccaacgcgtttacgtttttcaactacgatccaatccgcgaccgccaaaaaccgatttcgacgact 357  Q
    ||||||||||| | |||||| || |||  ||||| | ||||||||| ||||||||||| ||||||||| |||| ||| ||||||| ||||| |||||||     
T  43861213 gggtttcaaaattgactcgtctgaatcgtacgatacaaacgcgtttgcgtttttcaacgacgatccaaaccgcaaccaccaaaaagcgattccgacgacg 43861114  T
Q  358 ttccggcacagcgaggggatgtgagatcgtgaactcggacgatcctacgagttggatcgcaagtttgtctaccatg 433  Q
    ||||||||| ||||||||||||||||||  ||||||  |||||||||||||||||||||| |||||||||||||||    
T  43861113 ttccggcacggcgaggggatgtgagatcacgaactcaaacgatcctacgagttggatcgcgagtttgtctaccatg 43861038  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 17177045 - 17176960
Alignment:
Q  18 ccatgatttatgggtgtattggaaaatttccctaattattgatagtggctttattgggaagattttcaatagtcaatgggtttaat 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||| | ||||||||||||    
T  17177045 ccatgatttatgggtgtattggaaaatttccctaattattgatagtaggtgtattgggaagattttcaataattaatgggtttaat 17176960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 43861493 - 43861414
Alignment:
Q  24 tttatgggtgtattggaaaatttccctaattattgatagtggctttattgggaagattttcaatagtcaatgggtttaat 103  Q
    |||||||||||| || |||||||||||||||||||||||| | | |||||||||||||||||||| | ||||||||||||    
T  43861493 tttatgggtgtactgaaaaatttccctaattattgatagtaggtgtattgggaagattttcaataattaatgggtttaat 43861414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 257 - 405
Target Start/End: Complemental strand, 17176762 - 17176613
Alignment:
Q  257 ctgggtttcaaaactaactcgtttggatca-acgattccaacgcgtttacgtttttcaactacgatccaatccgcgaccgccaaaaaccgatttcgacga 355  Q
    ||||||||||||| | |||||| || |||  ||||| | || ||||||  ||||||||||  |||||||| |||| ||| ||||||| |||||  |||||    
T  17176762 ctgggtttcaaaattgactcgtctgaatcgtacgatacaaatgcgtttgtgtttttcaacggcgatccaaaccgcaaccaccaaaaagcgattctgacga 17176663  T
Q  356 ctttccggcacagcgaggggatgtgagatcgtgaactcggacgatcctac 405  Q
    | ||||||||| || |||||||||||||||| ||||||| ||||||||||    
T  17176662 cgttccggcacggctaggggatgtgagatcgcgaactcgaacgatcctac 17176613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 81 - 147
Target Start/End: Complemental strand, 43861414 - 43861348
Alignment:
Q  81 tttcaatagtcaatgggtttaatgagggaatttgaaaccgtttcagagaaagagaagagtgaaacac 147  Q
    |||||||  |||||||||||||| |||||||| |||||||||||||||||  | |||||||||||||    
T  43861414 tttcaatgatcaatgggtttaataagggaattagaaaccgtttcagagaataataagagtgaaacac 43861348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 295 - 432
Target Start/End: Complemental strand, 6046183 - 6046046
Alignment:
Q  295 aacgcgtttacgtttttcaactacgatccaatccgcgaccgccaaaaaccgatttcgacgactttccggcacagcgaggggatgtgagatcgtgaactcg 394  Q
    ||||||||| | |||||||||  |||||||| |||| ||| ||||||| ||||| ||||||| ||||||||| ||||||||||||||||||| |||||||    
T  6046183 aacgcgtttgcatttttcaacggcgatccaacccgcaaccaccaaaaagcgattccgacgacgttccggcacggcgaggggatgtgagatcgcgaactcg 6046084  T
Q  395 gacgatcctacgagttggatcgcaagtttgtctaccat 432  Q
     |||||||||||||||||||||| ||||||||||||||    
T  6046083 aacgatcctacgagttggatcgcgagtttgtctaccat 6046046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 350 - 430
Target Start/End: Original strand, 3738247 - 3738327
Alignment:
Q  350 cgacgactttccggcacagcgaggggatgtgagatcgtgaactcggacgatcctacgagttggatcgcaagtttgtctacc 430  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  3738247 cgacgattttccggcacggcgaggggatgtgagatcgtgaactcggacgatcctacgagttggatcgcgagtttgtctacc 3738327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 6046500 - 6046415
Alignment:
Q  18 ccatgatttatgggtgtattggaaaatttccctaattattgatagtggctttattgggaagattttcaatagtcaatgggtttaat 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| | |||| |||||||    
T  6046500 ccatgatttatgggtgtattggaaaatttccctaattattgatagtgggtgtattgggaagattttcaataattaatgagtttaat 6046415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 7704557 - 7704645
Alignment:
Q  18 ccatgatttatgggtgtattggaaaatttccctaattattgatagtggctttattgggaagattttcaatagtcaatgggtttaatgag 106  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||| |||||||||| || ||||| |||||||||||    
T  7704557 ccatgatttatgggtgtattggaaagttttcctaattattgatagtgactttattggaaagattttcattaatcaattggtttaatgag 7704645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 12113083 - 12112997
Alignment:
Q  18 ccatgatttatgggtgtattggaaaatttccctaattattgatagtggctttattgggaagattttcaatagtcaatgggtttaatga 105  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||| |||||    
T  12113083 ccatgatttatgggtttattg-aaaatttccctaattattgatagtggctgtattgggaagatcttcaataatcaatgggttcaatga 12112997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 344 - 430
Target Start/End: Original strand, 7704881 - 7704967
Alignment:
Q  344 cgatttcgacgactttccggcacagcgaggggatgtgagatcgtgaactcggacgatcctacgagttggatcgcaagtttgtctacc 430  Q
    ||||| |||| |||||| ||||| || ||||||||| ||||||  ||||| ||||||| ||||||||||||||| ||||||||||||    
T  7704881 cgattccgacaactttctggcacggcaaggggatgtaagatcgcaaactcagacgatcatacgagttggatcgcgagtttgtctacc 7704967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 9e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 24358528 - 24358638
Alignment:
Q  18 ccatgatttatgggtgtattggaaaatttccctaattattgatagtggctttattgggaagattttcaatagtcaatgggtttaatgagggaatttgaaa 117  Q
    |||||||| |||||| |||||||||||| ||||||||||||||||||| | |||||||||||| ||||||| ||||||||||||||||  | ||||||||    
T  24358528 ccatgattaatgggtttattggaaaattaccctaattattgatagtgg-tatattgggaagatcttcaataatcaatgggtttaatgataggatttgaaa 24358626  T
Q  118 ccgtttcagaga 129  Q
    |||||| |||||    
T  24358627 ccgttttagaga 24358638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 24321904 - 24322013
Alignment:
Q  18 ccatgatttatgggtgtattggaaaatttccctaattattgatagtggctttattgggaagattttcaatagtcaatgggtttaatgagggaatttgaaa 117  Q
    |||||||| |||||| ||||||||| || ||||||||||||||||||| | |||||||||||| ||||||| ||||||||||||||||  | ||||||||    
T  24321904 ccatgattaatgggtttattggaaa-ttaccctaattattgatagtgg-tatattgggaagatcttcaataatcaatgggtttaatgataggatttgaaa 24322001  T
Q  118 ccgtttcagaga 129  Q
    |||||| |||||    
T  24322002 ccgttttagaga 24322013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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