View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20685_low_11 (Length: 494)
Name: NF20685_low_11
Description: NF20685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20685_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 18 - 487
Target Start/End: Original strand, 42076389 - 42076872
Alignment:
| Q |
18 |
agatagaacaatggaaaacatgtttttgctatgaaccgccataaccnnnnnnncgaaagcagagggtcataaaaacaggggaaggtacgagaagcttgtt |
117 |
Q |
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| T |
42076389 |
agatagaacaatggaaaacatgtttttgctatgaaccgccataaccaaaaaaacgaaagcagagggtcataaaaacaggggaaggtacgagaagcttgtt |
42076488 |
T |
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| Q |
118 |
aaagaattgacttggttg---ttaaagacaaagtgccatgcaaaacaagaaggtgacacgttatatatggtggattgtggagtgagtgcaaggaagtatt |
214 |
Q |
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| T |
42076489 |
aaagaattgacttggttgttgttaaagacaaagtgccatgcaaaacaagaaggtgacacgttatatatggtggattgtggagtgagcgcaaggaagtatt |
42076588 |
T |
|
| Q |
215 |
gtgtatacgcgtgtatattatgtatatgtgattgatactgtgaacctacctagtaatcttttgtatgat------attttattttatggttgatgtcgtt |
308 |
Q |
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| T |
42076589 |
gtgtatacgcgtgtatattatgtatgtgtgattgatactgtgaacctacctagtaatcttttgtatgatattttaattttattttatggttgatgtcgtt |
42076688 |
T |
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| Q |
309 |
tagtacaagttttctttgcttc---ttattattatggtgttttgtttctagtttcttcttttc--tcttaattggaaaatattcgatgaacctgaatgag |
403 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42076689 |
tagtacaagttttctttgcttcttattattattatggtgttttgtttctagtttcttcttttctttcttaattggaaaatattcgatgaacctgaatgag |
42076788 |
T |
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| Q |
404 |
acctttgttgtatagaatagaactctgttgctgccgtatgttggtttaatacataaaattccacagctacctttacctttgctt |
487 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42076789 |
acctttgttggatagaatagaactctgttgctgccgtatgttggtttaatacataaaattccacagctacctttacctttgctt |
42076872 |
T |
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