View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20685_low_12 (Length: 489)
Name: NF20685_low_12
Description: NF20685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20685_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 22 - 477
Target Start/End: Complemental strand, 34439584 - 34439127
Alignment:
| Q |
22 |
gctctgtatctacccacctttcaagcacagaatattaccgatggcggccacattgtcctcattttccgatgatctccactcaccgatcatgtcaccgcca |
121 |
Q |
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| T |
34439584 |
gctctctatctacccacctttcaagcacagaatattaccgatggcggccacattgtcctcattttccgatgatctccactcaccgatcatgtcaccgccg |
34439485 |
T |
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| Q |
122 |
tccaaaaaggtgggaacggaaaagatctgcatcgatgagatgcttgaaaaatactgtggtgagtttggaaaatggcagctgaaacacttcattctcacat |
221 |
Q |
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| T |
34439484 |
tccaaaaaggcgggaacggaaaagatctgcatcgatgagatgcttgagaaatactgtggtgagtttggaaaatggcagctgaaacacttcattctcacat |
34439385 |
T |
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| Q |
222 |
at--tgcttgggctttggaagcttttcatactatggttatgatttttgctgatagggaacctgattggaagtgtgttgaaggtatggagtgttcagccga |
319 |
Q |
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| T |
34439384 |
gtcttgcttgggcgttggaagcttttcatactatggttatgatttttgctgatagggaacctgattggaagtgtgttgaaggtatggagtgttccgccga |
34439285 |
T |
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| Q |
320 |
tggaagtgtctgcgatatggcgtcgtcgtcgtgggagtggatcggagggaaagatgcttctacggtgactgagtggagtttgatatgtggtgacaagttt |
419 |
Q |
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| T |
34439284 |
tggaagtgtctgcgatatggcgtcgtcgtcgtgggagtggatcggagggaaagatgcttctacggtgactgagtggagtttgatatgtggtgacaagttt |
34439185 |
T |
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| Q |
420 |
aaagttggacttgttcaagctgttttctttactggttgtatgattggttcgttcattc |
477 |
Q |
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| T |
34439184 |
aaagttggacttgttcaagctgttttctttactggttgtatgattggttcgttcattc |
34439127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 140 - 474
Target Start/End: Complemental strand, 34422608 - 34422272
Alignment:
| Q |
140 |
gaaaagatctgcatcgatgagatgcttgaaaaatactgtggtgagtttggaaaatggcagctgaaacacttcattctcaca--tattgcttgggctttgg |
237 |
Q |
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||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||| |
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| T |
34422608 |
gaaaaaatctgcatcgatgagatgcttgagaaatactgtggtgagtttggaaaatggcagctgaaacacttcattctcacaagtcttgcttgggcgttgg |
34422509 |
T |
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| Q |
238 |
aagcttttcatactatggttatgatttttgctgatagggaacctgattggaagtgtgttgaaggtatggagtgttcagccgatggaagtgtctgcgatat |
337 |
Q |
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| T |
34422508 |
aagcttttcatactatggttatgatttttgctgatagggaacctgattggaagtgtgttgaaggtatggagtgttccgccaatggaagtgtctgcgatat |
34422409 |
T |
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| Q |
338 |
ggcgtcgtcgtcgtgggagtggatcggagggaaagatgcttctacggtgactgagtggagtttgatatgtggtgacaagtttaaagttggacttgttcaa |
437 |
Q |
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| T |
34422408 |
ggcatcgtcgtcgtggcagtgggttgctggtgaaggtgcttctacggtgtctgaatggagtttgatttgtggtgataagtttaagattggacttgttcaa |
34422309 |
T |
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| Q |
438 |
gctgttttctttactggttgtatgattggttcgttca |
474 |
Q |
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||| |||||||| |||| ||||||||||||| ||||| |
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| T |
34422308 |
gctcttttctttgctgggtgtatgattggttagttca |
34422272 |
T |
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