View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20685_low_13 (Length: 474)
Name: NF20685_low_13
Description: NF20685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20685_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Complemental strand, 31207568 - 31207114
Alignment:
| Q |
1 |
acaaacaccatcatcttccttatccaacaacatagtcaaacattccttcaaaggctgcacacatctaacattaataacctcagtaagatgcactgcatca |
100 |
Q |
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| T |
31207568 |
acaaacaccatcatcttccttatccaacaacatagtcaaacattccttcaaaggctgcacacatctaacattaataacctcagtaagatgcactgcatca |
31207469 |
T |
|
| Q |
101 |
acctttgaagcttccgtatccgacaaggcaccgtggagagggtggaaagtgaagtgagggtaagaagaagggtttggagagttgaaaactgtgtgaacaa |
200 |
Q |
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| T |
31207468 |
acctttgaagcttccgtatcggacaaggcaccgtggagagggtggaaagtgaagtgagggtaagaagaagggtttggagagttaaaaactgtgtgaacaa |
31207369 |
T |
|
| Q |
201 |
tggtgattgagaagccttttgaatggagaatggttgctagttggagtaatggtgttatgtgaccttgaaatggtgatggcattaagattattttgtgtcc |
300 |
Q |
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| T |
31207368 |
tggtgattgagaagccttttgaatggagaatggttgctagttggagtaatggtgttatgtggccttgaaatggtgatggcattaagattattttgtgtcc |
31207269 |
T |
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| Q |
301 |
tttggctatttgtttttgttgttccatcttggagaggtttttgattgaattgggatgaatggtgttcttggatttgattttggatctatatgattattaa |
400 |
Q |
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| T |
31207268 |
tttggctatttctttttgttgttccatcttggagaggtttttgattgaattgggatgaatggtgttcttggatttgattttggatctatatgattattaa |
31207169 |
T |
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| Q |
401 |
attagaattaggacatagatataaattggataggataggaatcataggacgaatt |
455 |
Q |
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| T |
31207168 |
attagaattaggacatagatataaattggataggataggaatcataggacgaatt |
31207114 |
T |
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