View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20685_low_14 (Length: 435)

Name: NF20685_low_14
Description: NF20685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20685_low_14
NF20685_low_14
[»] chr1 (10 HSPs)
chr1 (176-304)||(52132657-52132782)
chr1 (13-162)||(52975098-52975251)
chr1 (13-104)||(25804699-25804790)
chr1 (13-104)||(13789352-13789443)
chr1 (22-183)||(39626395-39626560)
chr1 (13-104)||(22909598-22909690)
chr1 (343-414)||(52132979-52133050)
chr1 (134-176)||(13789470-13789512)
chr1 (134-176)||(25804630-25804672)
chr1 (145-174)||(22909543-22909572)
[»] chr5 (2 HSPs)
chr5 (13-179)||(37010304-37010474)
chr5 (13-104)||(37285048-37285139)
[»] chr4 (9 HSPs)
chr4 (13-177)||(46096339-46096507)
chr4 (13-179)||(53827246-53827416)
chr4 (13-176)||(21629867-21630034)
chr4 (13-104)||(20040225-20040316)
chr4 (13-82)||(46138840-46138909)
chr4 (13-78)||(2501956-2502021)
chr4 (134-176)||(2501884-2501926)
chr4 (67-104)||(13874274-13874311)
chr4 (134-174)||(29318490-29318530)
[»] chr2 (9 HSPs)
chr2 (13-173)||(29458344-29458508)
chr2 (13-176)||(43567670-43567837)
chr2 (13-104)||(7571019-7571110)
chr2 (13-104)||(16665614-16665705)
chr2 (134-180)||(7570946-7570992)
chr2 (134-177)||(16665544-16665587)
chr2 (139-184)||(284477-284522)
chr2 (139-176)||(22985460-22985497)
chr2 (135-183)||(40648500-40648548)
[»] chr8 (7 HSPs)
chr8 (13-176)||(4141197-4141364)
chr8 (13-176)||(10189275-10189442)
chr8 (13-104)||(28846061-28846152)
chr8 (13-52)||(12278593-12278632)
chr8 (13-52)||(916119-916158)
chr8 (134-177)||(28846179-28846222)
chr8 (134-176)||(21560322-21560364)
[»] chr7 (8 HSPs)
chr7 (13-182)||(47230761-47230934)
chr7 (13-104)||(39064076-39064167)
chr7 (13-104)||(25416503-25416594)
chr7 (15-176)||(5434417-5434582)
chr7 (25-105)||(9934232-9934312)
chr7 (134-177)||(25416433-25416476)
chr7 (134-176)||(17034954-17034996)
chr7 (135-173)||(39067185-39067223)
[»] chr3 (5 HSPs)
chr3 (13-176)||(35873395-35873562)
chr3 (13-104)||(52352849-52352940)
chr3 (13-103)||(48269310-48269400)
chr3 (134-177)||(52352967-52353010)
chr3 (139-176)||(50565096-50565132)
[»] chr6 (4 HSPs)
chr6 (13-105)||(18885486-18885578)
chr6 (13-104)||(13430381-13430472)
chr6 (13-104)||(10792240-10792331)
chr6 (131-176)||(14211779-14211824)
[»] scaffold0084 (1 HSPs)
scaffold0084 (13-176)||(14661-14828)
[»] scaffold1295 (1 HSPs)
scaffold1295 (13-176)||(1148-1315)
[»] scaffold0316 (1 HSPs)
scaffold0316 (142-178)||(3171-3207)


Alignment Details
Target: chr1 (Bit Score: 79; Significance: 9e-37; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 176 - 304
Target Start/End: Original strand, 52132657 - 52132782
Alignment:
Q  176 tgtatataatgatgatatatgtatgagaactcgtcgtttatactggtaattatagagaaaattgacgtcgatgaaatatttaatttttaattaggataaa 275  Q
    ||||||||||||||||||||| |||| | |||||||||||||| |||||| || || |||||||||||| ||||||||||||||||   |||||||||||    
T  52132657 tgtatataatgatgatatatgcatgaaagctcgtcgtttatacaggtaatcatcgataaaattgacgtccatgaaatatttaattt---attaggataaa 52132753  T
Q  276 ttttcaataaattttgcgaaagtctaatt 304  Q
    ||||||||||||||||||||||| |||||    
T  52132754 ttttcaataaattttgcgaaagtttaatt 52132782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 13 - 162
Target Start/End: Complemental strand, 52975251 - 52975098
Alignment:
Q  13 aatatgatgcatttaaaatattagaaacaatattatattttaaaatgggatggataatgtaggaaaattgatggatcaaattaaaaatattgagtaga-- 110  Q
    ||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||| | ||||||| |||||||||||||||||||||  | ||      
T  52975251 aatatgatgcatttaaaatattaaaaacaatattatattttaaggtgggatggataatgtggaaaaattggtggatcaaattaaaaatattgcttggata 52975152  T
Q  111 --gttcttagaaaaattttaaacactattttaatcaaacccgtgcaacgcatgg 162  Q
      ||||||    |||||  || || |||||||||||||||||||||||||||||    
T  52975151 tggttcttgagcaaattgcaagcagtattttaatcaaacccgtgcaacgcatgg 52975098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 25804790 - 25804699
Alignment:
Q  13 aatatgatgcatttaaaatattagaaacaatattatattttaaaatgggatggataatgtaggaaaattgatggatcaaattaaaaatattg 104  Q
    |||||| ||||||||||||||||||||||||||||||||| ||  ||||||||||||||| ||||||||| |||||| ||||||||||||||    
T  25804790 aatatggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccaattaaaaatattg 25804699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 13789352 - 13789443
Alignment:
Q  13 aatatgatgcatttaaaatattagaaacaatattatattttaaaatgggatggataatgtaggaaaattgatggatcaaattaaaaatattg 104  Q
    |||||| ||||||||||||||||||||||||||||||||| ||  ||||||||||||||| ||||||||| |||||| | ||||||||||||    
T  13789352 aatatggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccagttaaaaatattg 13789443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 22 - 183
Target Start/End: Original strand, 39626395 - 39626560
Alignment:
Q  22 catttaaaatattagaaacaatattatattttaaaatgggatggataatgtaggaaaattgatggatcaaattaaaaat----attgagtagagttctta 117  Q
    ||||||||||||||||||||||||||||||| ||  |||| |||||||||| ||||||||| |  ||| ||||||||||    ||||| ||  ||||||     
T  39626395 catttaaaatattagaaacaatattatatttcaatgtggggtggataatgtgggaaaattggtatatctaattaaaaatattgattgaatatggttcttg 39626494  T
Q  118 gaaaaattttaaacactattttaatcaaacccgtgcaacgcatggattatatacctagtgtatata 183  Q
    |  |||||  || || |||||| ||||| ||||||||||||| || ||||||||||||| ||||||    
T  39626495 ggtaaattgcaagcaatattttgatcaatcccgtgcaacgcacgggttatatacctagtatatata 39626560  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 22909690 - 22909598
Alignment:
Q  13 aatatgatgcatttaaaatattagaaacaatattatattttaaaatgggatggataatgtagg-aaaattgatggatcaaattaaaaatattg 104  Q
    ||||| || ||||||||||||||||||||||||||||||| ||  |||||||| |||||| || ||||||||||||| || |||||| |||||    
T  22909690 aatataatacatttaaaatattagaaacaatattatatttcaaggtgggatggttaatgtgggaaaaattgatggataaagttaaaagtattg 22909598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 343 - 414
Target Start/End: Original strand, 52132979 - 52133050
Alignment:
Q  343 tgaagtaaggataagaacaatacactaacaaccacatttaaggaaaattaatcattccgaatgaagtagaaa 414  Q
    |||||||| ||||||||||| ||| ||  ||||||||||||| ||||| |||| |||||||||||| |||||    
T  52132979 tgaagtaaagataagaacaacacagtaggaaccacatttaagcaaaataaatccttccgaatgaagcagaaa 52133050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 176
Target Start/End: Original strand, 13789470 - 13789512
Alignment:
Q  134 tattttaatcaaacccgtgcaacgcatggattatatacctagt 176  Q
    |||||| ||||||||||||||||||| || |||||||||||||    
T  13789470 tattttgatcaaacccgtgcaacgcacgggttatatacctagt 13789512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 176
Target Start/End: Complemental strand, 25804672 - 25804630
Alignment:
Q  134 tattttaatcaaacccgtgcaacgcatggattatatacctagt 176  Q
    |||||| ||||||||||||||||||| || |||||||||||||    
T  25804672 tattttgatcaaacccgtgcaacgcacgggttatatacctagt 25804630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 174
Target Start/End: Complemental strand, 22909572 - 22909543
Alignment:
Q  145 aacccgtgcaacgcatggattatataccta 174  Q
    ||||||||||||||||||||||||||||||    
T  22909572 aacccgtgcaacgcatggattatataccta 22909543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 37010304 - 37010474
Alignment:
Q  13 aatatgatgcatttaaaatattagaaacaatattatattttaaaatgggatggataatgtaggaaaattgatggatcaaattaaaaata----ttgagta 108  Q
    |||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| | |||| |||||||||||    ||| |||    
T  37010304 aatatggtgcatttaaaatattagaaacaatattatattttaaggtgggatggataatgtaggaaaattggtagatccaattaaaaatattgtttgggta 37010403  T
Q  109 gagttcttagaaaaattttaaacactattttaatcaaacccgtgcaacgcatggattatatacctagtgta 179  Q
      |||||| |  |||||  || || |||||| ||||||||||||||||||| || ||||||||||||||||    
T  37010404 tggttcttgggcaaattgcaagcagtattttgatcaaacccgtgcaacgcacgggttatatacctagtgta 37010474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 37285139 - 37285048
Alignment:
Q  13 aatatgatgcatttaaaatattagaaacaatattatattttaaaatgggatggataatgtaggaaaattgatggatcaaattaaaaatattg 104  Q
    |||||| | ||||||||||||||||||||||||||||||| ||  ||| ||||||||||| | ||||||| |||||| ||||||||||||||    
T  37285139 aatatggtacatttaaaatattagaaacaatattatatttcaaggtggaatggataatgtggaaaaattggtggatccaattaaaaatattg 37285048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 5e-35; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 13 - 177
Target Start/End: Original strand, 46096339 - 46096507
Alignment:
Q  13 aatatgatgcatttaaaatattagaaacaatattatattttaaaatgggatggataatgtaggaaaattgatggatcaaattaaaaata----ttgagta 108  Q
    |||||| ||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||| |||||| |||||||||||    ||| |||    
T  46096339 aatatggtgcatttaaaatattagaaacaatattatattttaaggtaggatggataatgtaggaaaattggtggatccaattaaaaatattgtttgggta 46096438  T
Q  109 gagttcttagaaaaattttaaacactattttaatcaaacccgtgcaacgcatggattatatacctagtg 177  Q
      |||||| |  |||||  || || |||||| ||||||||||||||||||| || ||||||||||||||    
T  46096439 tggttcttgggcaaattgcaagcagtattttgatcaaacccgtgcaacgcacgggttatatacctagtg 46096507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 13 - 179
Target Start/End: Complemental strand, 53827416 - 53827246
Alignment:
Q  13 aatatgatgcatttaaaatattagaaacaatattatattttaaaatgggatggataatgtaggaaaattgatggatcaaattaaaaata----ttgagta 108  Q
    |||||| ||||||||||||||||||||||||||||||||| ||  ||||||||||||||| ||||||||| |||||| |||||||||||    |||||||    
T  53827416 aatatggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccaattaaaaatattgtttgagta 53827317  T
Q  109 gagttcttagaaaaattttaaacactattttaatcaaacccgtgcaacgcatggattatatacctagtgta 179  Q
       ||||| |  |||||  || || |||||| ||||||||||||||||||| || ||||||||||||||||    
T  53827316 tgattcttgggcaaattgcaagcagtattttgatcaaacccgtgcaacgcacgggttatatacctagtgta 53827246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 13 - 176
Target Start/End: Complemental strand, 21630034 - 21629867
Alignment:
Q  13 aatatgatgcatttaaaatattagaaacaatattatattttaaaatgggatggataatgtaggaaaattgatggatcaaattaaaaata----ttgagta 108  Q
    |||||||||||||||||||||||||||||||||||||||||||  | ||||| ||||||| | |||| || ||||||||||||||||||    ||| |||    
T  21630034 aatatgatgcatttaaaatattagaaacaatattatattttaaggtaggatgaataatgtggaaaaactggtggatcaaattaaaaatattgcttgggta 21629935  T
Q  109 gagttcttagaaaaattttaaacactattttaatcaaacccgtgcaacgcatggattatatacctagt 176  Q
      ||||||    |||||  || || ||||||||||||||| |||||||||| || |||||||||||||    
T  21629934 tggttcttgagcaaattgcaagcagtattttaatcaaacctgtgcaacgcacgggttatatacctagt 21629867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 20040225 - 20040316
Alignment:
Q  13 aatatgatgcatttaaaatattagaaacaatattatattttaaaatgggatggataatgtaggaaaattgatggatcaaattaaaaatattg 104  Q
    |||||| ||||||||||||||||||||||||||||||||| ||  |||| | |||||||| ||||||||| |||||||||||||||||||||    
T  20040225 aatatggtgcatttaaaatattagaaacaatattatatttcaagttggggtagataatgtgggaaaattggtggatcaaattaaaaatattg 20040316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 46138840 - 46138909
Alignment:
Q  13 aatatgatgcatttaaaatattagaaacaatattatattttaaaatgggatggataatgtaggaaaattg 82  Q
    |||||| ||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||    
T  46138840 aatatggtgcatttaaaatattagaaacaatattatattttaaggtaggatggataatgtaggaaaattg 46138909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 2502021 - 2501956
Alignment:
Q  13 aatatgatgcatttaaaatattagaaacaatattatattttaaaatgggatggataatgtaggaaa 78  Q
    |||||| ||||||||||||||||||||||||||||||||| ||  ||||||||||||||| |||||    
T  2502021 aatatggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaa 2501956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 176
Target Start/End: Complemental strand, 2501926 - 2501884
Alignment:
Q  134 tattttaatcaaacccgtgcaacgcatggattatatacctagt 176  Q
    |||||| ||||||||||||||||||| || |||||||||||||    
T  2501926 tattttgatcaaacccgtgcaacgcacgggttatatacctagt 2501884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 13874311 - 13874274
Alignment:
Q  67 taatgtaggaaaattgatggatcaaattaaaaatattg 104  Q
    |||||||| ||||||| |||||||||||||||||||||    
T  13874311 taatgtagtaaaattggtggatcaaattaaaaatattg 13874274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 29318490 - 29318530
Alignment:
Q  134 tattttaatcaaacccgtgcaacgcatggattatataccta 174  Q
    |||| ||||||||||||| ||||||| ||||||||||||||    
T  29318490 tattctaatcaaacccgtacaacgcacggattatataccta 29318530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 13 - 173
Target Start/End: Original strand, 29458344 - 29458508
Alignment:
Q  13 aatatgatgcatttaaaatattagaaacaatattatattttaaaatgggatggataatgtaggaaaattgatggatcaaattaaaaatattg----agta 108  Q
    |||||| ||||||||||||||||||||||||||||||||| ||  ||||||||||||||| ||||||| |||||||||||||||||||||||     |||    
T  29458344 aatatggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaatggatggatcaaattaaaaatattgtttaggta 29458443  T
Q  109 gagttcttagaaaaattttaaacactattttaatcaaacccgtgcaacgcatggattatatacct 173  Q
      |||||| |  |||||  || || |||||| ||||||||||||||||||| || ||||||||||    
T  29458444 cggttcttgggcaaattgaaagcagtattttgatcaaacccgtgcaacgcacgggttatatacct 29458508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 13 - 176
Target Start/End: Original strand, 43567670 - 43567837
Alignment:
Q  13 aatatgatgcatttaaaatattagaaacaatattatattttaaaatgggatggataatgtaggaaaattgatggatcaaattaaaaata----ttgagta 108  Q
    |||||| ||||||||||||||||||||||||||||||||| ||  ||||||||||||||| ||||||| | ||||||||||||||||||    ||| |||    
T  43567670 aatatggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaatgggtggatcaaattaaaaatattgtttgggta 43567769  T
Q  109 gagttcttagaaaaattttaaacactattttaatcaaacccgtgcaacgcatggattatatacctagt 176  Q
      |||||| |  |||||  || || ||||||||||||||||||||||||||  | |||||||| ||||    
T  43567770 cggttcttgggtaaattgcaagcagtattttaatcaaacccgtgcaacgcactggttatatacttagt 43567837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 7571110 - 7571019
Alignment:
Q  13 aatatgatgcatttaaaatattagaaacaatattatattttaaaatgggatggataatgtaggaaaattgatggatcaaattaaaaatattg 104  Q
    |||||| ||||||||||||||||||||||||||||||||| ||  ||||||||||||||| ||||||||| |||||| | ||||||||||||    
T  7571110 aatatggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccagttaaaaatattg 7571019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 16665705 - 16665614
Alignment:
Q  13 aatatgatgcatttaaaatattagaaacaatattatattttaaaatgggatggataatgtaggaaaattgatggatcaaattaaaaatattg 104  Q
    |||||| ||||||||||||||||||||||||||||||||| ||  ||||||||||||||| ||||||||| |||||| | ||||||||||||    
T  16665705 aatatggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccagttaaaaatattg 16665614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 180
Target Start/End: Complemental strand, 7570992 - 7570946
Alignment:
Q  134 tattttaatcaaacccgtgcaacgcatggattatatacctagtgtat 180  Q
    |||||| ||||||||||||||||||| || |||||||||||||||||    
T  7570992 tattttgatcaaacccgtgcaacgcacgggttatatacctagtgtat 7570946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 177
Target Start/End: Complemental strand, 16665587 - 16665544
Alignment:
Q  134 tattttaatcaaacccgtgcaacgcatggattatatacctagtg 177  Q
    |||||| ||||||||||||||||||| || ||||||||||||||    
T  16665587 tattttgatcaaacccgtgcaacgcacgggttatatacctagtg 16665544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 284477 - 284522
Alignment:
Q  139 taatcaaacccgtgcaacgcatggattatatacctagtgtatataa 184  Q
    |||| |||||||||||||||| || ||||||||||||| |||||||    
T  284477 taataaaacccgtgcaacgcaagggttatatacctagtatatataa 284522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 176
Target Start/End: Complemental strand, 22985497 - 22985460
Alignment:
Q  139 taatcaaacccgtgcaacgcatggattatatacctagt 176  Q
    ||||||||||||||||||||| || |||||||||||||    
T  22985497 taatcaaacccgtgcaacgcacgggttatatacctagt 22985460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 40648548 - 40648500
Alignment:
Q  135 attttaatcaaacccgtgcaacgcatggattatatacctagtgtatata 183  Q
    |||||||||||| |||||||||||| || ||||||||||| | ||||||    
T  40648548 attttaatcaaatccgtgcaacgcacgggttatatacctaatatatata 40648500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 13 - 176
Target Start/End: Original strand, 4141197 - 4141364
Alignment:
Q  13 aatatgatgcatttaaaatattagaaacaatattatattttaaaatgggatggataatgtaggaaaattgatggatcaaattaaaaata----ttgagta 108  Q
    |||||||||||||||||||||| ||||||||||||||||||||  | ||||||||||||| |||||| || ||||||||||||||||||    ||| |||    
T  4141197 aatatgatgcatttaaaatattggaaacaatattatattttaaggtaggatggataatgtgggaaaactggtggatcaaattaaaaatattgcttgggta 4141296  T
Q  109 gagttcttagaaaaattttaaacactattttaatcaaacccgtgcaacgcatggattatatacctagt 176  Q
      ||||||    |||||  || || |||||||||||||||||||||||||| || |||||||||||||    
T  4141297 tggttcttgagcaaattgcaagcaatattttaatcaaacccgtgcaacgcacgggttatatacctagt 4141364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 13 - 176
Target Start/End: Original strand, 10189275 - 10189442
Alignment:
Q  13 aatatgatgcatttaaaatattagaaacaatattatattttaaaatgggatggataatgtaggaaaattgatggatcaaattaaaaata----ttgagta 108  Q
    |||||||||||||||||||||||||||||||||||||||||||  |  |||||||||||| |||||| || ||||||||||||||||||    ||| |||    
T  10189275 aatatgatgcatttaaaatattagaaacaatattatattttaaggtatgatggataatgtgggaaaactggtggatcaaattaaaaatattgcttgggta 10189374  T
Q  109 gagttcttagaaaaattttaaacactattttaatcaaacccgtgcaacgcatggattatatacctagt 176  Q
      ||||||    |||||  || || |||||||||||||| ||||||||||| || |||||||||||||    
T  10189375 tggttcttgagcaaattgcaagcaatattttaatcaaactcgtgcaacgcacgggttatatacctagt 10189442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 28846061 - 28846152
Alignment:
Q  13 aatatgatgcatttaaaatattagaaacaatattatattttaaaatgggatggataatgtaggaaaattgatggatcaaattaaaaatattg 104  Q
    |||||| ||||||||||||||||||||||||||||||||| ||  ||||||||||||||| ||||||||| |||||| ||||||||||||||    
T  28846061 aatatggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccaattaaaaatattg 28846152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 12278593 - 12278632
Alignment:
Q  13 aatatgatgcatttaaaatattagaaacaatattatattt 52  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  12278593 aatatggtgcatttaaaatattagaaacaatattatattt 12278632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 916158 - 916119
Alignment:
Q  13 aatatgatgcatttaaaatattagaaacaatattatattt 52  Q
    |||||| |||||||||||||||||||| ||||||||||||    
T  916158 aatatggtgcatttaaaatattagaaaaaatattatattt 916119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 177
Target Start/End: Original strand, 28846179 - 28846222
Alignment:
Q  134 tattttaatcaaacccgtgcaacgcatggattatatacctagtg 177  Q
    |||||| ||||||||||||||||||| || ||||||||||||||    
T  28846179 tattttgatcaaacccgtgcaacgcacgggttatatacctagtg 28846222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 176
Target Start/End: Complemental strand, 21560364 - 21560322
Alignment:
Q  134 tattttaatcaaacccgtgcaacgcatggattatatacctagt 176  Q
    |||| ||||||||||||||||||||| || |||||||||||||    
T  21560364 tattctaatcaaacccgtgcaacgcacgggttatatacctagt 21560322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 8e-31; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 47230934 - 47230761
Alignment:
Q  13 aatatgatgcatttaaaatattagaaacaatattatattttaaaatgggatggataatgtaggaaaattgatggatcaaattaaaaata----ttgagta 108  Q
    |||||| ||||||||||||||||||||||||||||||||| ||  ||||||||||||||| | ||||||| |||||| |||||||||||    ||| |||    
T  47230934 aatatggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtggaaaaattggtggatccaattaaaaatattgtttgggta 47230835  T
Q  109 gagttcttagaaaaattttaaacactattttaatcaaacccgtgcaacgcatggattatatacctagtgtatat 182  Q
      |||||| |  |||||  || || |||||| ||||||||||||||||||| || ||||||||||||| |||||    
T  47230834 tggttcttgggcaaattgcaagcaatattttgatcaaacccgtgcaacgcacgggttatatacctagtatatat 47230761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 39064167 - 39064076
Alignment:
Q  13 aatatgatgcatttaaaatattagaaacaatattatattttaaaatgggatggataatgtaggaaaattgatggatcaaattaaaaatattg 104  Q
    |||||| ||||||||||||||||||||||||||||||||| ||  ||||||||||||||| ||||||||| |||||| ||||||||||||||    
T  39064167 aatatggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccaattaaaaatattg 39064076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 25416594 - 25416503
Alignment:
Q  13 aatatgatgcatttaaaatattagaaacaatattatattttaaaatgggatggataatgtaggaaaattgatggatcaaattaaaaatattg 104  Q
    |||||| ||||||||||||||||||||||||||||||||| ||  ||||||||||||||| ||||||||| |||||| | ||||||||||||    
T  25416594 aatatggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccagttaaaaatattg 25416503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 15 - 176
Target Start/End: Original strand, 5434417 - 5434582
Alignment:
Q  15 tatgatgcatttaaaatattagaaacaatattatattttaaaatgggatggataatgtaggaaaattgatggatcaaattaaaaatattgagtag----a 110  Q
    |||| |||||||||||||| | |||||||||||||||| |||||||  |||||||||| | ||||||| |||||||||||||||||||||  |||    |    
T  5434417 tatggtgcatttaaaatatcataaacaatattatatttcaaaatggagtggataatgtggcaaaattggtggatcaaattaaaaatattggttaggtgta 5434516  T
Q  111 gttcttagaaaaattttaaacactattttaatcaaacccgtgcaacgcatggattatatacctagt 176  Q
    |||| |   ||||||  || || |||||| |||||||| |||||||||| || |||||||||||||    
T  5434517 gttcctgagaaaattgcaagcaatattttgatcaaaccagtgcaacgcacgggttatatacctagt 5434582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 25 - 105
Target Start/End: Complemental strand, 9934312 - 9934232
Alignment:
Q  25 ttaaaatattagaaacaatattatattttaaaatgggatggataatgtaggaaaattgatggatcaaattaaaaatattga 105  Q
    |||||||||||||||||||||||||||| ||  |||| |||||||||| ||||||||| | || |||||||||||||||||    
T  9934312 ttaaaatattagaaacaatattatatttcaaggtggggtggataatgtgggaaaattggtagaacaaattaaaaatattga 9934232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 177
Target Start/End: Complemental strand, 25416476 - 25416433
Alignment:
Q  134 tattttaatcaaacccgtgcaacgcatggattatatacctagtg 177  Q
    |||||| ||||||||||||||||||| || ||||||||||||||    
T  25416476 tattttgatcaaacccgtgcaacgcacgggttatatacctagtg 25416433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 176
Target Start/End: Original strand, 17034954 - 17034996
Alignment:
Q  134 tattttaatcaaacccgtgcaacgcatggattatatacctagt 176  Q
    |||| ||||||||||||||||||||| || |||||||||||||    
T  17034954 tattctaatcaaacccgtgcaacgcacgggttatatacctagt 17034996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 39067223 - 39067185
Alignment:
Q  135 attttaatcaaacccgtgcaacgcatggattatatacct 173  Q
    ||||||||||||||||||||||||| || ||||||||||    
T  39067223 attttaatcaaacccgtgcaacgcacgggttatatacct 39067185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 13 - 176
Target Start/End: Original strand, 35873395 - 35873562
Alignment:
Q  13 aatatgatgcatttaaaatattagaaacaatattatattttaaaatgggatggataatgtaggaaaattgatggatcaaattaaaaata----ttgagta 108  Q
    |||||| ||||||||||||||||||||||||||||||||| ||  ||||||||||||||| ||||||||| |||||| |||||||||||    ||| |||    
T  35873395 aatatggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccaattaaaaatattgtttgggta 35873494  T
Q  109 gagttcttagaaaaattttaaacactattttaatcaaacccgtgcaacgcatggattatatacctagt 176  Q
      |||||| |  |||||  || || |||||| || |||||||||||||||| || |||||||||||||    
T  35873495 tggttcttgggcaaattgcaagcagtattttgatgaaacccgtgcaacgcacgggttatatacctagt 35873562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 52352849 - 52352940
Alignment:
Q  13 aatatgatgcatttaaaatattagaaacaatattatattttaaaatgggatggataatgtaggaaaattgatggatcaaattaaaaatattg 104  Q
    |||||| ||||||||||||||||||||||||||||||||| ||  ||||||||||||||| ||||||||| |||||| | ||||||||||||    
T  52352849 aatatggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccagttaaaaatattg 52352940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 48269310 - 48269400
Alignment:
Q  13 aatatgatgcatttaaaatattagaaacaatattatattttaaaatgggatggataatgtaggaaaattgatggatcaaattaaaaatatt 103  Q
    |||||| |||||||||||||| | |||||||||||||||| ||  ||||||| ||||||| | |||||||||||||| |||||||||||||    
T  48269310 aatatggtgcatttaaaatatcataaacaatattatatttcaaggtgggatgaataatgtggaaaaattgatggatccaattaaaaatatt 48269400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 177
Target Start/End: Original strand, 52352967 - 52353010
Alignment:
Q  134 tattttaatcaaacccgtgcaacgcatggattatatacctagtg 177  Q
    |||||| ||||||||||||||||||| || ||||||||||||||    
T  52352967 tattttgatcaaacccgtgcaacgcacgggttatatacctagtg 52353010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 176
Target Start/End: Complemental strand, 50565132 - 50565096
Alignment:
Q  139 taatcaaacccgtgcaacgcatggattatatacctagt 176  Q
    |||||||||||||||||||||||| |||||||||||||    
T  50565132 taatcaaacccgtgcaacgcatgg-ttatatacctagt 50565096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 18885486 - 18885578
Alignment:
Q  13 aatatgatgcatttaaaatattagaaacaatattatattttaaaatgggatggataatgtaggaaaattgatggatcaaattaaaaatattga 105  Q
    |||||| | ||||||||||||||||||||||||||||||| ||  |||| |||||||||| ||||||||| ||||||||||||||||||||||    
T  18885486 aatatggtacatttaaaatattagaaacaatattatatttcaatgtggggtggataatgtgggaaaattggtggatcaaattaaaaatattga 18885578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 13430472 - 13430381
Alignment:
Q  13 aatatgatgcatttaaaatattagaaacaatattatattttaaaatgggatggataatgtaggaaaattgatggatcaaattaaaaatattg 104  Q
    |||||| ||||||||||||||||||||||||||||||||| ||  ||||||||||||||| ||||||||| |||||| | ||||||||||||    
T  13430472 aatatggtgcatttaaaatattagaaacaatattatatttcaaggtgggatggataatgtgggaaaattggtggatccagttaaaaatattg 13430381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 10792240 - 10792331
Alignment:
Q  13 aatatgatgcatttaaaatattagaaacaatattatattttaaaatgggatggataatgtaggaaaattgatggatcaaattaaaaatattg 104  Q
    |||||| | ||||| ||||||||||||||||||||||||| ||| | || ||||||||||  |||||||| |||||||||||||||||||||    
T  10792240 aatatggtacatttgaaatattagaaacaatattatatttcaaagttgggtggataatgtgcgaaaattggtggatcaaattaaaaatattg 10792331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 14211824 - 14211779
Alignment:
Q  131 cactattttaatcaaacccgtgcaacgcatggattatatacctagt 176  Q
    ||||||||||||||||| ||||||||||| || |||||||| ||||    
T  14211824 cactattttaatcaaactcgtgcaacgcacgggttatatacatagt 14211779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 176
Target Start/End: Original strand, 14661 - 14828
Alignment:
Q  13 aatatgatgcatttaaaatattagaaacaatattatattttaaaatgggatggataatgtaggaaaattgatggatcaaattaaaaatattgagtaga-- 110  Q
    |||||| ||||||| ||||||| ||||||||||||||||| ||  | || ||||||||||  |||||||| |||||||||||||||||||||  | ||      
T  14661 aatatggtgcatttgaaatattcgaaacaatattatatttcaaggttgggtggataatgtgcgaaaattggtggatcaaattaaaaatattgtttggata 14760  T
Q  111 --gttcttagaaaaattttaaacactattttaatcaaacccgtgcaacgcatggattatatacctagt 176  Q
      |||||| ||||||||  || || |||||| |||||||||||||| ||||  | |||||||||||||    
T  14761 tggttcttggaaaaattgcaagcagtattttgatcaaacccgtgcagcgcacaggttatatacctagt 14828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1295 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold1295
Description:

Target: scaffold1295; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 13 - 176
Target Start/End: Complemental strand, 1315 - 1148
Alignment:
Q  13 aatatgatgcatttaaaatattagaaacaatattatattttaaaatgggatggataatgtaggaaaattgatggatcaaattaaaaata----ttgagta 108  Q
    |||||| ||||||| ||||||| ||||||||||||||||| ||  | || ||||||||||  |||||||| ||||||||||||||||||    ||| |||    
T  1315 aatatggtgcatttgaaatattcgaaacaatattatatttcaaggttgggtggataatgtgcgaaaattggtggatcaaattaaaaatattgtttgggta 1216  T
Q  109 gagttcttagaaaaattttaaacactattttaatcaaacccgtgcaacgcatggattatatacctagt 176  Q
      |||||| | ||||||  || || |||||| |||||||||| ||||||||  | |||||||||||||    
T  1215 tggttcttgggaaaattgcaagcagtattttgatcaaacccgcgcaacgcacaggttatatacctagt 1148  T

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Target: scaffold0316 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 178
Target Start/End: Complemental strand, 3207 - 3171
Alignment:
Q  142 tcaaacccgtgcaacgcatggattatatacctagtgt 178  Q
    |||||||||||||||||| || |||||||||||||||    
T  3207 tcaaacccgtgcaacgcacgggttatatacctagtgt 3171  T

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