View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20685_low_15 (Length: 404)
Name: NF20685_low_15
Description: NF20685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20685_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 10 - 387
Target Start/End: Original strand, 3324046 - 3324435
Alignment:
| Q |
10 |
attattctctgaaagccctgcagctacatttcttctagttgttgttcccaagctaaacttgggaattgattcatagagatttccataactccattattgg |
109 |
Q |
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| T |
3324046 |
attattttatgaaagccctgcagcttcatttcttctagttgttgttcccaagctaaactttggaattcattcatagagattttcataactccattattgg |
3324145 |
T |
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| Q |
110 |
gaaaatc-taaatccctcatagaataaagataagtcctgattagagtttataaacagtgtcccccggcacctaaaaacaccggttttgtaaggatgggtt |
208 |
Q |
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| T |
3324146 |
gaaaaacctaaatcccacatagaataaagacaagtcctgattagagtttagaaacggtgtcccccggcacctaaaaacaccggttttgtaaggatgggtt |
3324245 |
T |
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| Q |
209 |
aaatccaatataaaaaccaaatatccattattatttagattctgctgttcttta-----------ttttgttcttttatcaattattgatgttttgactg |
297 |
Q |
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| T |
3324246 |
aaatccaatataaaaacctaatatccattattatttagattctgctgttctttattgaatttattttttgttcttttatcaattattgatgttttgactg |
3324345 |
T |
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| Q |
298 |
cttttatattgacatacatgatatgttccaaggttcttgtttgaaggttttgtaaactaaaaacatgcgaccatgtgtatataagcaaag |
387 |
Q |
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| T |
3324346 |
cttttatattgacgtacatgatatgctccaaggttcttgttttaaggttttataaactaaaaacaagtgaccatgtgtatataagcaaag |
3324435 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 24231858 - 24231902
Alignment:
| Q |
189 |
cggttttgtaaggatgggttaaatccaatataaaaaccaaatatc |
233 |
Q |
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| T |
24231858 |
cggttttgtaaggatgggttagatccaatctaaaatcctaatatc |
24231902 |
T |
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