View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20685_low_16 (Length: 376)
Name: NF20685_low_16
Description: NF20685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20685_low_16 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 15 - 376
Target Start/End: Complemental strand, 9832524 - 9832163
Alignment:
| Q |
15 |
acttactagttggtgtcgaaccatttggtcatctccattgcaggcacagaagcattacctctggccatggagaagtaggtatcgaatccaatctcaccgc |
114 |
Q |
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| T |
9832524 |
acttactagttggtgtcaaaccacttggtcatctccattgcaggcacagaagcgttacctctggccatggagaagtaggtatcgaatccaatctcaccgc |
9832425 |
T |
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| Q |
115 |
cagtccatccgtatcttgggggaactgcaccaaccatggcggtggtattgagcacctgatcatagtatgcgaaagtgttgctagggatatacttgatccc |
214 |
Q |
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| T |
9832424 |
cagtccatccgtatcttgggggaacagcaccgaccatggcggtggtattgagcacctgatcatagtatgcgaaagtgttgctagggatatacttgatccc |
9832325 |
T |
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| Q |
215 |
ggcactggacatctgtttccagatagatgccctgaggtcagcagccaccttctccaaatcctcggcgctgctcttcttatcccagaatgattcaagggcg |
314 |
Q |
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| T |
9832324 |
ggcactggacatctgtttccagatagatgccctgaggtcagcagccaccttctccaaatcctcggcgctgctcttcttatcccagaatgattcaagggcg |
9832225 |
T |
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| Q |
315 |
aacttgagctctctcttggggcccatgcgaggatatccaacaatatgtgatgccattttctg |
376 |
Q |
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| T |
9832224 |
aacttgagctctctcttggggcccatgcgaggatatccaacaatatgtgatgccattttctg |
9832163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 13 - 373
Target Start/End: Original strand, 33470131 - 33470491
Alignment:
| Q |
13 |
tcacttactagttggtgtcgaaccatttggtcatctccattgcaggcacagaagcattacctctggccatggagaagtaggtatcgaatccaatctcacc |
112 |
Q |
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| T |
33470131 |
tcacttactagttggtgtcgaaccacttggtcatctccatagcagggacggtggcattacctctagccattgaaaagtaagtatcgaatccaatctcacc |
33470230 |
T |
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| Q |
113 |
gccagtccatccgtatcttgggggaactgcaccaaccatggcggtggtattgagcacctgatcatagtatgcgaaagtgttgctagggatatacttgatc |
212 |
Q |
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| T |
33470231 |
accagtccatccatacctgggtggaacggccccgagagtggcggtagtatcaagtacatgatcatagtaagtaaaagtgttgcttgggatatacttgatc |
33470330 |
T |
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| Q |
213 |
ccggcactggacatctgtttccagatagatgccctgaggtcagcagccaccttctccaaatcctcggcgctgctcttcttatcccagaatgattcaaggg |
312 |
Q |
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| T |
33470331 |
ccaacatcagacatctgtttccagatggatgctcttagatcagcagaaaccttcttcaaatcctcggcactgctctttttgtcccagaatgattccaaag |
33470430 |
T |
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| Q |
313 |
cgaacttgagctctctcttggggcccatgcgaggatatccaacaatatgtgatgccatttt |
373 |
Q |
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| T |
33470431 |
caaatttcaactctctcttgggtcccatacgagggtatccaacaatgtgagaagccatttt |
33470491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 15 - 366
Target Start/End: Complemental strand, 35945308 - 35944957
Alignment:
| Q |
15 |
acttactagttggtgtcgaaccatttggtcatctccattgcaggcacagaagcattacctctggccatggagaagtaggtatcgaatccaatctcaccgc |
114 |
Q |
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||||||||||||||||| ||||| |||||||| ||||| || |||||||| ||||| ||||| |||||||||||||| |||| || |||||||| || | |
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| T |
35945308 |
acttactagttggtgtcaaaccacttggtcatttccatagctggcacagatgcatttcctctcgccatggagaagtaaatatcaaaaccaatctccccac |
35945209 |
T |
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| Q |
115 |
cagtccatccgtatcttgggggaactgcaccaaccatggcggtggtattgagcacctgatcatagtatgcgaaagtgttgctagggatatacttgatccc |
214 |
Q |
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|| ||||| ||||| ||||||||||| | |||||| || || | | || ||||||||||||| ||| |||||||| || |||| || || || |
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| T |
35945208 |
cattccatttatatctgtcaggaactgcaccgagcatggctgttgtgtccaatacttgatcatagtatgagaaggtgttgcttggaatatgctgaattcc |
35945109 |
T |
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| Q |
215 |
ggcactggacatctgtttccagatagatgccctgaggtcagcagccaccttctccaaatcctcggcgctgctcttcttatcccagaatgattcaagggcg |
314 |
Q |
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||| || |||||| |||||||||| || || |||| |||||| |||| || ||| ||||| || || ||||| |||||| |||||||| ||||| |
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| T |
35945108 |
agcatcggccatctgcttccagatagctgatctaaggttagcagcaacctgcttcaattcctcagcactactctttccatcccaaaatgattccagggca |
35945009 |
T |
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| Q |
315 |
aacttgagctctctcttggggcccatgcgaggatatccaacaatatgtgatg |
366 |
Q |
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| T |
35945008 |
aacttaagctccctcttgggtcccatgcggggataaccaacaatatgggatg |
35944957 |
T |
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