View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20685_low_20 (Length: 287)
Name: NF20685_low_20
Description: NF20685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20685_low_20 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 15 - 287
Target Start/End: Complemental strand, 49511332 - 49511060
Alignment:
| Q |
15 |
tatattcactgtcaaacaagataaccccattggagcaactctaattggaagagcttatgttccagttgaacaagtcataaagggcaacatagtgaataca |
114 |
Q |
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| T |
49511332 |
tatattcactgtcaaacaagataaccccattggagcaactctaattggaagagcttatgttccagttgaacaagtcataaagggcaacatagtgaataca |
49511233 |
T |
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| Q |
115 |
tgggttaatatattagatgtagatcatcgtccaatacaaggcggttccaaaattcatgttcaaatacaattctcacatgttaaaaatgatccaaactggt |
214 |
Q |
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| T |
49511232 |
tgggttaatatattagatgtagatcatcatccaatacaaggcggttccaaaattcatgttcaaatacaattctcacatgttaaaaatgatccaaactggt |
49511133 |
T |
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| Q |
215 |
cacaaggaataaagagtccaggatatcaaggagttcctcgcacattctttaaacaaaataatggttgccaaat |
287 |
Q |
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| T |
49511132 |
cacaaggactaaagagtccaggatatcaaggagttcctcgcacattctttaaacaaaataatggttgccaaat |
49511060 |
T |
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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 49522280 - 49522226
Alignment:
| Q |
17 |
tattcactgtcaaacaagataaccccattggagcaactctaattggaagagctta |
71 |
Q |
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| T |
49522280 |
tattcactgtcaaagatgataatccgattggtgcaactctaataggaagagctta |
49522226 |
T |
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