View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20685_low_22 (Length: 280)
Name: NF20685_low_22
Description: NF20685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20685_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 74 - 266
Target Start/End: Original strand, 9333395 - 9333587
Alignment:
| Q |
74 |
ttaattattaagttaatccttcatactctataatgaggtattttcacagttaattacatctggagttgatgatcatttggccgcaagtaagaagaaatcg |
173 |
Q |
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| T |
9333395 |
ttaattagtaagttaatccttcatactctataatgaggtattttcacagttaattacatctggagttgatgatcatttggccacaagtacgaagaaatcg |
9333494 |
T |
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| Q |
174 |
atcccatgaattgtttatccatgatatacgttgtgaatggacgtggtcttcaatttatgtgcacaaaaatttgggaaatttgaatattatttc |
266 |
Q |
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| T |
9333495 |
accccatgaattgtttatccatgatatacgttgtgaatggacgtggtcttcaatttatgtgcacaaaaatttgggaaatttgaatattctttc |
9333587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 9333337 - 9333377
Alignment:
| Q |
20 |
aaaaaatgagtagaatataaaatgatcataaaattagtaag |
60 |
Q |
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| T |
9333337 |
aaaaaatgagtacaacataaaatgatcataaaattagtaag |
9333377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 74 - 266
Target Start/End: Complemental strand, 51861669 - 51861477
Alignment:
| Q |
74 |
ttaattattaagttaatccttcatactctataatgaggtattttcacagttaattacatctggagttgatgatcatttggccgcaagtaagaagaaatcg |
173 |
Q |
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| T |
51861669 |
ttaattagtaagttaatccttcatactctataatgaggtatttccacggttaattacatctggagttgatgatcatttggccgcaagtaagaagaaatcg |
51861570 |
T |
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| Q |
174 |
atcccatgaattgtttatccatgatatacgttgtgaatggacgtggtcttcaatttatgtgcacaaaaatttgggaaatttgaatattatttc |
266 |
Q |
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| T |
51861569 |
actccatgaattgtttatccctgatatacgttgtgaatggacgtggtcttcaatttatgtgcacaaaaatttgggaaatttaaatattctttc |
51861477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 51861738 - 51861698
Alignment:
| Q |
20 |
aaaaaatgagtagaatataaaatgatcataaaattagtaag |
60 |
Q |
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| T |
51861738 |
aaaaaatgagtagaacataaaatgatcataaaattagtaag |
51861698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 19 - 266
Target Start/End: Original strand, 22158276 - 22158522
Alignment:
| Q |
19 |
gaaaaaatgagtagaatataaaatgatcataaaattagtaagnnnnnnnnnaacattaattattaagttaatccttcatactctataatgaggtattttc |
118 |
Q |
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| T |
22158276 |
gaaaaaatgagtagaacataatatgataataaaattagtaagtttttttt-aacgttaattagtaagttaatccttcatactctataatgaggtatttcc |
22158374 |
T |
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| Q |
119 |
acagttaattacatctggagttgatgatcatttggccgcaagtaagaagaaatcgatcccatgaattgtttatccatgatatacgttgtgaatggacgtg |
218 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||| | |||||||||||||||||||||||| |
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| T |
22158375 |
acatttaattacatctggagttgatgatcatttggccgcaagtaagaagaaatcaacctaatgaattgtttattcctgatatacgttgtgaatggacgtg |
22158474 |
T |
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| Q |
219 |
gtcttcaatttatgtgcacaaaaatttgggaaatttgaatattatttc |
266 |
Q |
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| T |
22158475 |
gtcttcaatttatgtgcacaaaaatttgggaaatttgaatattctttc |
22158522 |
T |
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