View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20685_low_24 (Length: 263)
Name: NF20685_low_24
Description: NF20685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20685_low_24 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 16 - 263
Target Start/End: Complemental strand, 397171 - 396924
Alignment:
| Q |
16 |
attaaacattgtggttcgattcccagaacctttgaacggtgttcggccaaacaagagttcgtataagaatatcccgaacgtccaccaatccacagcactt |
115 |
Q |
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| T |
397171 |
attaaacattgtggttcgattcccagaacctttgaacggtgttcggccaaacaagagttcgtataagaatatcccgaacgtccaccaatccacagcactt |
397072 |
T |
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| Q |
116 |
ccatgtccttctcctttaataatttcaggcgccaagtactcgtgtgtgcctacaaaggacattgaccgcgcacttgttggctcagcgactaactcaggga |
215 |
Q |
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| T |
397071 |
ccatgtccttctcctttaataatttcaggcgccaagtactcgtgtgtgcctacaaaggacattgaccgcgcacttgttggctcagcgactaactcaggga |
396972 |
T |
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| Q |
216 |
gaggtgtcatttggtgatgcatgtcattctttagtctgaattttttct |
263 |
Q |
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| T |
396971 |
gaggtgtcatttggtgatgcatgtcattctttagtctgaattttttct |
396924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 32 - 224
Target Start/End: Original strand, 12233731 - 12233923
Alignment:
| Q |
32 |
cgattcccagaacctttgaacggtgttcggccaaacaagagttcgtataagaatatcccgaacgtccaccaatccacagcacttccatgtccttctcctt |
131 |
Q |
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| T |
12233731 |
cgattcgccgaacctttgaatggagttctaccaaacaaaagctcgtataagaatataccaaatgtccaccagtctacagcactgccgtgaccttcgcctt |
12233830 |
T |
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| Q |
132 |
taataatttcaggcgccaagtactcgtgtgtgcctacaaaggacattgaccgcgcacttgttggctcagcgactaactcagggagaggtgtca |
224 |
Q |
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| T |
12233831 |
tgatgatttcaggcgccaagtactcgtgcgtgccaacaaaggacattgatcgggcatttgtgggctccgccataagctcagggagtggtgtca |
12233923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 80 - 201
Target Start/End: Original strand, 31314190 - 31314311
Alignment:
| Q |
80 |
aagaatatcccgaacgtccaccaatccacagcacttccatgtccttctcctttaataatttcaggcgccaagtactcgtgtgtgcctacaaaggacattg |
179 |
Q |
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| T |
31314190 |
aagaaaattccgaatgtccaccaatcaactgcacttccatgaccttctcctttgataatttcaggggcgagatactcatgagtaccaacgaaggacattg |
31314289 |
T |
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| Q |
180 |
accgcgcacttgttggctcagc |
201 |
Q |
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| T |
31314290 |
accgagctgttgtaggctcagc |
31314311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 180
Target Start/End: Original strand, 26569446 - 26569555
Alignment:
| Q |
71 |
agttcgtataagaatatcccgaacgtccaccaatccacagcacttccatgtccttctcctttaataatttcaggcgccaagtactcgtgtgtgcctacaa |
170 |
Q |
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| T |
26569446 |
agttcatacaagaatattccgaaagtccaccaatctaccgcactaccgtgtccttctcctttgatgatttcaggtgcgagatactcgtgtgtgcctacaa |
26569545 |
T |
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| Q |
171 |
aggacattga |
180 |
Q |
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| T |
26569546 |
atgacattga |
26569555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 36109848 - 36109808
Alignment:
| Q |
83 |
aatatcccgaacgtccaccaatccacagcacttccatgtcc |
123 |
Q |
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| T |
36109848 |
aatatccctaaggtccaccaatccacagcactaccatgtcc |
36109808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 1034836 - 1034900
Alignment:
| Q |
80 |
aagaatatcccgaacgtccaccaatccacagcacttccatgtccttctcctttaataatttcagg |
144 |
Q |
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| T |
1034836 |
aagaatattccaaatgtccaccagtcaactgcacttccatgaccttcccctttgataatttcagg |
1034900 |
T |
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