View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20685_low_25 (Length: 256)
Name: NF20685_low_25
Description: NF20685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20685_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 4e-84; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 68 - 237
Target Start/End: Original strand, 9502971 - 9503140
Alignment:
| Q |
68 |
aaactaaaaaatctacaacaaaacacattgccatcatgataacattaaaccagccaacaaagttttaattattttcacaagacattcaagaacatggaaa |
167 |
Q |
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| T |
9502971 |
aaactaaaaaatctacaacaaaacacattgccatcatgataacattaaaccatccaacaaagtttttattattttcacaagacattcaagaaaatggaaa |
9503070 |
T |
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| Q |
168 |
aagatgggactaaattctgcatcatttatattacaagctgcttaatttacaactccgacatggttcctat |
237 |
Q |
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| T |
9503071 |
aagatgggactaaattctgcatcatttatattacaagctgcttaatttacaactccgacatggttcctat |
9503140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 79 - 175
Target Start/End: Original strand, 9501151 - 9501247
Alignment:
| Q |
79 |
tctacaacaaaacacattgccatcatgataacattaaaccagccaacaaagttttaattattttcacaagacattcaagaacatggaaaaagatggg |
175 |
Q |
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| T |
9501151 |
tctacaacaaaacacattgccatcatgtcaatattaaaccagccatcaaagtttcaattattttcacaatacattcaagaaaatggaaaaatatggg |
9501247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 160 - 237
Target Start/End: Original strand, 770150 - 770227
Alignment:
| Q |
160 |
catggaaaaagatgggactaaattctgcatcatttatattacaagctgcttaatttacaactccgacatggttcctat |
237 |
Q |
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| T |
770150 |
catggaaaaagatgggacgaaattctgcatcatttctatcacaggctgcttaattgacaactgttacatggttcctat |
770227 |
T |
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