View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20685_low_3 (Length: 707)
Name: NF20685_low_3
Description: NF20685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20685_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 589; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 1 - 688
Target Start/End: Original strand, 6902962 - 6903650
Alignment:
| Q |
1 |
cgttacttaagtttgttggttttgcaagtgctatgttctgtttctgattccaatgcttacttacaccttaatttatgttcatgttctgactaatatgaat |
100 |
Q |
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| T |
6902962 |
cgttacttaagtttgttggttttgcaagtgctatgttctgtttctgattccaatgcttacttacaccttaatttatgttcatgttctgactaatatgaat |
6903061 |
T |
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| Q |
101 |
tatccattcacgtgttatctaaaacttagaagaacaatttgttgctcaagttttgcgagaataaaactggtatattatgcacttcacacccttcaaattt |
200 |
Q |
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| T |
6903062 |
tatccattcacgtgttatctaaaacttagaagaa-aatttgttgctcaagttttgcgagaataaaactggtatattatgcacttcacacccttcaaattt |
6903160 |
T |
|
| Q |
201 |
ttgttcaatttactttgggttctttgagaaaaatgtcgagggagtttgaaacttttgttcaatttaatttgggttctttgagaaaaatgccgaggaagtt |
300 |
Q |
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| T |
6903161 |
ttgttcaatttactttgtgttctttgagaaaaatgtcgagggagtttgaaacttttgttcaatttaatttgggttctttgagaaaaatgccgaggaagtt |
6903260 |
T |
|
| Q |
301 |
ttaatttatttttgccgtaagagtttacccatcctgtatcaataannnnnnnnnnnnnnggtagatatacgagaatatcaata----attttactagtac |
396 |
Q |
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| T |
6903261 |
ttaatttatttttgccgtaagagtttacccatcctttatcaata--ttttttttttttgggtagatagacgagaatatcaataaattattttactagtac |
6903358 |
T |
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| Q |
397 |
tgaaacttgaaattgaaatatttactttgaatatgaatcttgtatggtacaaaagcttgtaataattttttctttctttcattagctgatcaaggttgtt |
496 |
Q |
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| T |
6903359 |
tgaaacttgaaattgaaatatttactttgaatatgaaacttgtatggtacaaaaacttgtaataattttttctttctttcattagctgatcaaggttgtt |
6903458 |
T |
|
| Q |
497 |
tactgtttagttcagtgtttgttaaaactttcaaaagagtaacgaagatgttttttatgatgggaaacaaaagagtaactatgttgtttggaatattctc |
596 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6903459 |
tactgtttagttcagtgtttgttaaaactttcaaaagagtaacgaagatgttttttatgatgggaaacaaaagagtaactaagttgtttggaatattctc |
6903558 |
T |
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| Q |
597 |
aataatgtttgttgtatgttctttgtttaagtgaagttcaacataagcactacacaccaaagcactttgtaaaaactacatatccacgtacc |
688 |
Q |
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| T |
6903559 |
aataatgtttgttgtatgttctttgtttaagtgaagttcaacataagccctacacaccaaagcactttgtaaaaactacatatccacgtacc |
6903650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 6915614 - 6915653
Alignment:
| Q |
4 |
tacttaagtttgttggttttgcaagtgctatgttctgttt |
43 |
Q |
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| T |
6915614 |
tacttaagtttgttggttttgcaagtgctatgttttgttt |
6915653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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