View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20685_low_31 (Length: 248)
Name: NF20685_low_31
Description: NF20685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20685_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 396745 - 396514
Alignment:
| Q |
1 |
catgatatgaccatcttctctcaccaacacattctccggtttaaggtctctatagattattccaagcatgtgcaagtactccaaagcaaggagaacttct |
100 |
Q |
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| T |
396745 |
catgatatgaccatcttctctcaccaacacattctccggtttaaggtctctatagattattccaagcatgtgcaagtactccaaagcaaggagaacttct |
396646 |
T |
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| Q |
101 |
gcaacataaaacctgtaaaaacccaaaaatggaaattagagaaatgttaatacacttggacactgttaggataaacatcttacttaagtgcttataacat |
200 |
Q |
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| T |
396645 |
gcaacataaaacctgtaaaaacccaaaaatggaaattagagaaatgttaatacatttggacactgttaggataaacatcttacttaagtgcttataacat |
396546 |
T |
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| Q |
201 |
aagtgtttattatacaagtataagctatttct |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
396545 |
aagtgtttattatacaagtataagctatttct |
396514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 12234169 - 12234276
Alignment:
| Q |
8 |
tgaccatcttctctcaccaacacattctccggtttaaggtctctatagattattccaagcatgtgcaagtactccaaagcaaggagaacttctgcaacat |
107 |
Q |
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| T |
12234169 |
tgaccatcttctctcaccaacacgttctcgggcttaaggtctctgtagatgattccaagcatgtgcaagtactccaaagcaaggagaacttctgctacat |
12234268 |
T |
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| Q |
108 |
aaaacctg |
115 |
Q |
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|||||||| |
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| T |
12234269 |
aaaacctg |
12234276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 61 - 115
Target Start/End: Original strand, 42196937 - 42196991
Alignment:
| Q |
61 |
tccaagcatgtgcaagtactccaaagcaaggagaacttctgcaacataaaacctg |
115 |
Q |
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| T |
42196937 |
tccaagcatgtgcaagtactccaaagcaaggaggacttcagcaacataaaacctg |
42196991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 27481488 - 27481428
Alignment:
| Q |
159 |
gacactgttaggataaacatcttacttaagtgcttataacataagtgtttattatacaagt |
219 |
Q |
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||||||||| ||||||||| |||| ||| ||||||||| ||||| ||||||||||| |||| |
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| T |
27481488 |
gacactgtttggataaacaacttaattaggtgcttatagcataaatgtttattatataagt |
27481428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 657874 - 657818
Alignment:
| Q |
163 |
ctgttaggataaacatcttacttaagtgcttataacataagtgtttattatacaagt |
219 |
Q |
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||||| ||||||||| |||| |||||||||||| ||||||||| |||| ||| |||| |
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| T |
657874 |
ctgtttggataaacaacttaattaagtgcttatcacataagtgattatcatagaagt |
657818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 26484881 - 26484831
Alignment:
| Q |
65 |
agcatgtgcaagtactccaaagcaaggagaacttctgcaacataaaacctg |
115 |
Q |
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|||||||||||||||||||||||||| || ||||| ||||||||||||||| |
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| T |
26484881 |
agcatgtgcaagtactccaaagcaagaaggacttcagcaacataaaacctg |
26484831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 40205254 - 40205206
Alignment:
| Q |
171 |
ataaacatcttacttaagtgcttataacataagtgtttattatacaagt |
219 |
Q |
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||||||| |||| ||| |||||||||||||||||||||||||| |||| |
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| T |
40205254 |
ataaacaacttatttacatgcttataacataagtgtttattatataagt |
40205206 |
T |
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