View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20685_low_33 (Length: 242)
Name: NF20685_low_33
Description: NF20685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20685_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 41777191 - 41776971
Alignment:
| Q |
1 |
gaacctcttgagcaggtagaattcaaccacagacaatgatgatgaaaacatcatcacaaatgtcgctgttgcactagcaacctgcaatcaaaatccttgt |
100 |
Q |
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| T |
41777191 |
gaacctcttgagtaggtagaattcaaccacagacaatgatgatgaaaacatcatcacaaatgtcgctgttgcactagcaacctgcaatcaaaatccttgt |
41777092 |
T |
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| Q |
101 |
aagttaaattgcttaagtttttagcttaaaatcaaactgtgtcatgcatgtgaagggatttgggaaacagatttgggttgtgtgtaggcataatctaatg |
200 |
Q |
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| T |
41777091 |
aagttaaattgcttaagtttttagcttaaaatcaaactgtgtcatgcatgtgaagggatttgggaaacagatttgggttgtgtgtaggcataatctaatg |
41776992 |
T |
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| Q |
201 |
cagtcacgcagtcagccacat |
221 |
Q |
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| T |
41776991 |
cagtcacgcagtcagccacat |
41776971 |
T |
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Back To:
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Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 26956955 - 26957042
Alignment:
| Q |
1 |
gaacctcttgagcaggtagaattcaaccacagacaatgatgatgaaaacatcatcacaaatgtcgctgttgcactagcaacctgcaat |
88 |
Q |
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|||||||||||| | |||||| |||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
26956955 |
gaacctcttgagaatgtagaactcaaaaacagacaaagatgatgaaaacatcatcacaaatgttgctgttgcactagcaacctacaat |
26957042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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