View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20685_low_34 (Length: 240)

Name: NF20685_low_34
Description: NF20685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20685_low_34
NF20685_low_34
[»] chr1 (2 HSPs)
chr1 (109-240)||(38821269-38821401)
chr1 (45-99)||(1176839-1176893)
[»] chr7 (2 HSPs)
chr7 (50-101)||(30857906-30857957)
chr7 (45-101)||(9412024-9412080)
[»] chr8 (4 HSPs)
chr8 (6-101)||(12281125-12281222)
chr8 (45-101)||(12281423-12281479)
chr8 (45-101)||(15156182-15156238)
chr8 (61-101)||(23123339-23123379)
[»] chr5 (1 HSPs)
chr5 (50-101)||(5187832-5187883)
[»] chr4 (4 HSPs)
chr4 (50-101)||(22681881-22681932)
chr4 (50-101)||(24775785-24775836)
chr4 (45-101)||(16555516-16555572)
chr4 (61-101)||(23433498-23433538)
[»] chr3 (1 HSPs)
chr3 (48-101)||(47665912-47665965)
[»] chr2 (1 HSPs)
chr2 (45-101)||(17346032-17346087)


Alignment Details
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 109 - 240
Target Start/End: Original strand, 38821269 - 38821401
Alignment:
Q  109 taattaaacactt-agttggattactgaaattaaatgtcttgatcaaatactgaacagatattgcaacatcttctcttggttaccgggtggttattaggt 207  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38821269 taattaaacactttagttggattactgaaattaaatctcttgatcaaatattgaacagatattgcaacatcttctcttggttaccgggtggttattaggt 38821368  T
Q  208 attagtatgatggtgttcactatccagcagtcg 240  Q
    |||||||||||||||||||||||||||||||||    
T  38821369 attagtatgatggtgttcactatccagcagtcg 38821401  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 99
Target Start/End: Complemental strand, 1176893 - 1176839
Alignment:
Q  45 gaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaa 99  Q
    |||| ||||||| |||||||||||||||||||||| | || |||||| |||||||    
T  1176893 gagggggtgcaaaattgcacaattgacaaaagatagggggtaaaagtgcaattaa 1176839  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 30857906 - 30857957
Alignment:
Q  50 ggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 101  Q
    ||||||| ||||||||||||||||||||||||||  |||||| |||||||||    
T  30857906 ggtgcaaaattgcacaattgacaaaagataagagacaaaagtgcaattaagc 30857957  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 9412080 - 9412024
Alignment:
Q  45 gaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 101  Q
    |||| ||||||| || |||||||| |||||||||||| || |||||| |||||||||    
T  9412080 gagggggtgcaaaatcgcacaattaacaaaagataagggggaaaagtgcaattaagc 9412024  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 101
Target Start/End: Complemental strand, 12281222 - 12281125
Alignment:
Q  6 agggggcaaaaagatgg--tgcaaaatcgctcnnnnnnnnngaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 101  Q
    |||||||||||||||||  |||||||||||||         |||||||||||| || ||||||||| ||||||||| | || |||||| |||||||||    
T  12281222 agggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaagaggaggtgcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaagc 12281125  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 12281423 - 12281479
Alignment:
Q  45 gaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 101  Q
    |||| ||||||| || |||||||| |||||||||||| || |||||| |||||||||    
T  12281423 gagggggtgcaaaatcgcacaattaacaaaagataagggggaaaagtgcaattaagc 12281479  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 15156182 - 15156238
Alignment:
Q  45 gaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 101  Q
    |||| ||||||| || ||||||||||||||||||| | || |||||| |||||||||    
T  15156182 gagggggtgcaaaatcgcacaattgacaaaagataggggggaaaagtgcaattaagc 15156238  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 23123379 - 23123339
Alignment:
Q  61 gcacaattgacaaaagataagaggaaaaagttcaattaagc 101  Q
    ||||||||||||||||||| |||| |||||| |||||||||    
T  23123379 gcacaattgacaaaagataggagggaaaagtgcaattaagc 23123339  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 5187832 - 5187883
Alignment:
Q  50 ggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 101  Q
    ||||||| ||||||||||| |||||||||||| || |||||| |||||||||    
T  5187832 ggtgcaaaattgcacaattaacaaaagataaggggcaaaagtgcaattaagc 5187883  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 22681881 - 22681932
Alignment:
Q  50 ggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 101  Q
    ||||||| ||||||||||| |||||||||| |||| |||||| |||||||||    
T  22681881 ggtgcaaaattgcacaattaacaaaagataggagggaaaagtgcaattaagc 22681932  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 24775785 - 24775836
Alignment:
Q  50 ggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 101  Q
    ||||||| || ||||||||||||||||||| |||| |||||| |||||||||    
T  24775785 ggtgcaaaatcgcacaattgacaaaagataggagggaaaagtgcaattaagc 24775836  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 16555572 - 16555516
Alignment:
Q  45 gaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 101  Q
    |||| ||||||| || |||||||| |||||||||||| || |||||| |||||||||    
T  16555572 gagggggtgcaaaatcgcacaattaacaaaagataagggggaaaagtgcaattaagc 16555516  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 23433498 - 23433538
Alignment:
Q  61 gcacaattgacaaaagataagaggaaaaagttcaattaagc 101  Q
    |||||||||||||||||||||||| | |||| |||||||||    
T  23433498 gcacaattgacaaaagataagaggcagaagtgcaattaagc 23433538  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 47665965 - 47665912
Alignment:
Q  48 gaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 101  Q
    ||||||||| || ||||||||||||||  ||||| ||||||||| |||||||||    
T  47665965 gaggtgcaaaatcgcacaattgacaaactataaggggaaaaagtgcaattaagc 47665912  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 17346032 - 17346087
Alignment:
Q  45 gaggaggtgcaatattgcacaattgacaaaagataagaggaaaaagttcaattaagc 101  Q
    |||||||||||| || ||||||||  |||||||||| |||||||||| |||||||||    
T  17346032 gaggaggtgcaaaatcgcacaattagcaaaagataa-aggaaaaagtgcaattaagc 17346087  T

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