View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20685_low_35 (Length: 232)
Name: NF20685_low_35
Description: NF20685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20685_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 9934945 - 9935169
Alignment:
| Q |
1 |
ctattggaggtgaatattctctttcaatgttgggtttgcatggtacggtttatgctaattatgctgttgataatagtgatttgttgcttgcttttggggt |
100 |
Q |
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| T |
9934945 |
ctattggaggtgaatattctctttcaatgttgggtttgcatggtacggtttatgctaattatgctgttgataatagtgatttgttgcttgcttttggggt |
9935044 |
T |
|
| Q |
101 |
taggtttgatgatagagttactggaaagttagaaacttttgctagtagggctaagattgttcatatagatattgattcagctgagattgggaagaataag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9935045 |
taggtttgatgatagagttactggaaagttagaaacttttgctagtagggctaagattgttcatatagatattgattcagctgagattgggaagaataag |
9935144 |
T |
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| Q |
201 |
attccacatgtttcgatctgtgctg |
225 |
Q |
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| T |
9935145 |
attccacatgtttcgatttgtgctg |
9935169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 37 - 200
Target Start/End: Original strand, 3472405 - 3472568
Alignment:
| Q |
37 |
tgcatggtacggtttatgctaattatgctgttgataatagtgatttgttgcttgcttttggggttaggtttgatgatagagttactggaaagttagaaac |
136 |
Q |
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||||||| || ||||||||||||||||| |||||||| |||||| | |||||||| ||||||||||||||||||||| | |||||||| ||| | || | |
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| T |
3472405 |
tgcatgggacagtttatgctaattatgcggttgataagagtgatcttttgcttgcgtttggggttaggtttgatgatcgggttactgggaagcttgaggc |
3472504 |
T |
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| Q |
137 |
ttttgctagtagggctaagattgttcatatagatattgattcagctgagattgggaagaataag |
200 |
Q |
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|||||| || |||| |||||||||||||| ||||||||| | ||||||||||||||||||||| |
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| T |
3472505 |
ttttgcgagccgggcgaagattgttcatattgatattgatgctgctgagattgggaagaataag |
3472568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 45476891 - 45477113
Alignment:
| Q |
1 |
ctattggaggtgaatattctctttcaatgttgggtttgcatggtacggtttatgctaattatgctgttgataatagtgatttgttgcttgcttttggggt |
100 |
Q |
| |
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|||||||||||||| |||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
45476891 |
ctattggaggtgaacattctctttcaatgttgggtatgcatggaactgtttatgctaattatgctgttgataatagtgatctgttgcttgcttttggggt |
45476990 |
T |
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| Q |
101 |
taggtttgatgatagagttactggaaagttagaaacttttgctagtagggctaagattgttcatatagatattgattcagctgagattgggaagaataag |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45476991 |
taggtttgatgatagagttactggaaagttagaagcttttgctagtagggctaagattgttcatatagatattgattcagctgagattgggaagaataag |
45477090 |
T |
|
| Q |
201 |
attccacatgtttcgatctgtgc |
223 |
Q |
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||||||||| | ||||| ||||| |
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| T |
45477091 |
attccacatctgtcgatttgtgc |
45477113 |
T |
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