View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20685_low_4 (Length: 694)
Name: NF20685_low_4
Description: NF20685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20685_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 255 - 629
Target Start/End: Original strand, 33387228 - 33387603
Alignment:
| Q |
255 |
gttaatatgaaccgaatccaaactcaatcggtcaatgttcttcagtaataactaataatgtaaaattttcaagagaaagaagattctaattctaagttaa |
354 |
Q |
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| T |
33387228 |
gttaatatgaaccgaatccaaactcaatcggtcaatgttcttcagtaataactaataatgtaaaattttcaagagaaagaagattctaattctaagttaa |
33387327 |
T |
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| Q |
355 |
cnnnnnnnnnn-gatgttatgctctaataaatagtacaaggaactctgccaattctttcggtggaattacttacaatcatcatgtccttcaaagttataa |
453 |
Q |
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| T |
33387328 |
caaaaaaaaaaagatgttatgctctaataaatagtacaaggaactctgccaattctttcggtggaattacttacaatcatcatgtccttcaaagttataa |
33387427 |
T |
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| Q |
454 |
cgaggtagtattagtgaacattcccatgaatgatgaaacatcaaattccaacccaaaagcaggaaaggtaaggtaaggcttcatttgcgattccgggctt |
553 |
Q |
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| T |
33387428 |
cgaggtagtattagtgaacattcccatgaatgatgaaacatcaaattccaatccaaaagcagaaaaggtaaggtaaggcttcatttgcgattccgggctt |
33387527 |
T |
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| Q |
554 |
catccttttccttctctcttttcttgtaaagcctgtcaagaacttgcttcgcttcacaccgtgggaaattagacaa |
629 |
Q |
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| T |
33387528 |
catccttttccttctctcttttcttgtaaagcctgtcaagaacttgcttcgcttcacaccgtgggaaattagacaa |
33387603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 33386974 - 33387090
Alignment:
| Q |
1 |
catgtgaacattttggcgaaaactggaagatctacactttttgtacttactatcatatatttgaagagacggaaaagaacgtgcaatttttagtactatc |
100 |
Q |
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| T |
33386974 |
catgtgaacattttggcgaaaactggaagatctacactttttgtatgtactatcatatatttgaagagacggaaaagaacgtgcaatttttagtactatc |
33387073 |
T |
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| Q |
101 |
atataattgaagagatg |
117 |
Q |
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| T |
33387074 |
atataattgaagagatg |
33387090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 625 - 694
Target Start/End: Complemental strand, 33387675 - 33387606
Alignment:
| Q |
625 |
gacaatttcatacgtactgtgacagatatacgtggtgactggttagttgatatagcaccaaattactatg |
694 |
Q |
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| T |
33387675 |
gacaatttcatacgtactgtgacagatatacgtggtgactggttagttgatatagcaccaaattactatg |
33387606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 8e-29; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 524 - 629
Target Start/End: Original strand, 38777260 - 38777365
Alignment:
| Q |
524 |
aggtaaggcttcatttgcgattccgggcttcatccttttccttctctcttttcttgtaaagcctgtcaagaacttgcttcgcttcacaccgtgggaaatt |
623 |
Q |
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| T |
38777260 |
aggtaaggcttcatttacgattccgggcttcatccttttccttctctcgtttcttgtaaagcttttcaagaacacgctttgcttcacattgtggaaaatt |
38777359 |
T |
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| Q |
624 |
agacaa |
629 |
Q |
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|||||| |
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| T |
38777360 |
agacaa |
38777365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 383 - 482
Target Start/End: Original strand, 38777039 - 38777134
Alignment:
| Q |
383 |
aatagtacaaggaactctgccaattctttcggtggaattacttacaatcatcatgtccttcaaagttataacgaggtagtattagtgaacattcccatga |
482 |
Q |
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|||||||||||||||||||||||||||||| | ||||||| |||| || || |||||| |||| | ||||||||||| || ||||||||||||||| |
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| T |
38777039 |
aatagtacaaggaactctgccaattctttcattaaaattactgacaaccagca-gtcctttaaaggt---acgaggtagtactaatgaacattcccatga |
38777134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 628 - 667
Target Start/End: Complemental strand, 38778084 - 38778045
Alignment:
| Q |
628 |
aatttcatacgtactgtgacagatatacgtggtgactggt |
667 |
Q |
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| T |
38778084 |
aatttcatacgtactgtgacagatattcgtggtgaatggt |
38778045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 629 - 690
Target Start/End: Original strand, 20817436 - 20817497
Alignment:
| Q |
629 |
atttcatacgtactgtgacagatatacgtggtgactggttagttgatatagcaccaaattac |
690 |
Q |
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|||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
20817436 |
atttcatacgtactgtgatggatatacgtggtgaatggttagttgatatagcaccacattac |
20817497 |
T |
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