View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20685_low_6 (Length: 596)

Name: NF20685_low_6
Description: NF20685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20685_low_6
NF20685_low_6
[»] chr4 (6 HSPs)
chr4 (223-519)||(51861985-51862276)
chr4 (323-519)||(39482309-39482500)
chr4 (47-203)||(51861792-51861945)
chr4 (516-596)||(51861513-51861593)
chr4 (274-325)||(7807638-7807689)
chr4 (5-47)||(51861734-51861776)
[»] chr3 (7 HSPs)
chr3 (223-464)||(22157786-22158028)
chr3 (47-206)||(22158065-22158224)
chr3 (428-519)||(22157704-22157790)
chr3 (238-307)||(9765713-9765782)
chr3 (325-517)||(9765844-9766030)
chr3 (516-596)||(22158406-22158486)
chr3 (1-47)||(22158240-22158286)
[»] chr7 (6 HSPs)
chr7 (223-452)||(9332858-9333087)
chr7 (47-206)||(9333124-9333284)
chr7 (428-519)||(9332764-9332849)
chr7 (516-596)||(9333471-9333551)
chr7 (1-49)||(9333298-9333346)
chr7 (286-325)||(27273125-27273164)
[»] chr8 (4 HSPs)
chr8 (228-325)||(43651710-43651807)
chr8 (460-516)||(22647851-22647907)
chr8 (387-452)||(22647938-22648003)
chr8 (325-443)||(43651549-43651666)
[»] chr5 (4 HSPs)
chr5 (228-325)||(21114919-21115016)
chr5 (325-517)||(21114689-21114875)
chr5 (387-452)||(27030052-27030117)
chr5 (460-516)||(27030148-27030204)
[»] scaffold0039 (1 HSPs)
scaffold0039 (244-322)||(81348-81426)
[»] scaffold0755 (2 HSPs)
scaffold0755 (387-452)||(5435-5500)
scaffold0755 (460-516)||(5531-5584)
[»] chr6 (2 HSPs)
chr6 (460-519)||(13550190-13550249)
chr6 (286-325)||(13550382-13550421)
[»] chr2 (2 HSPs)
chr2 (233-307)||(24863748-24863824)
chr2 (465-493)||(24863506-24863534)


Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 223 - 519
Target Start/End: Original strand, 51861985 - 51862276
Alignment:
Q  223 catatgtaatttctgataactcaaagtaactgatttatggcagtttttctatctatatttgctaattgctaatgagaattgaggaatgagcggttctatt 322  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  51861985 catatgtaatttctgataactcaaagtaactgatctatggcagtttttctatctatatttgctaaatgctaatgagaattgaggaatgagcgattctatt 51862084  T
Q  323 gttccaaattacaattgaagagacatttcatctatatttagatagggaaacatgacagggttttaccaaatatcaatatttattatctcttttatcatct 422  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||     
T  51862085 gttccatattacaattgaagagacatttcatctatatttagctagggaaacatgacagggtttcaccaaatatcaatatttattatctcttttatcatcc 51862184  T
Q  423 attggtttcagaacaaagagaaagatacatactttcatttcatcttacacttcttatttttaatttcaattccagcatgaatggatgatttagttgg 519  Q
    |||| |||||||||||||||||||||||||||     |||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||    
T  51862185 attgatttcagaacaaagagaaagatacatac-----tttcatcttacatttcttatttttaatttcaatttcagtatgaatggatgatttagttgg 51862276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 323 - 519
Target Start/End: Complemental strand, 39482500 - 39482309
Alignment:
Q  323 gttccaaattacaattgaagagacatttcatctatatttagatagggaaacatgacagggttttaccaaatatcaatatttattatctcttttatcatct 422  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  39482500 gttccaaattacaattgaagagacatttcatctatatttagatagggaaacatgacagggttttaccaaatatcaatatttattatctcttttatcatcc 39482401  T
Q  423 attggtttcagaacaaagagaaagatacatactttcatttcatcttacacttcttatttttaatttcaattccagcatgaatggatgatttagttgg 519  Q
    ||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||    
T  39482400 attggtttcagaacaaagagaaagatacatactt-----tcatcttacacttcttatttttaaattcaatttcagtatgaatggatgatttagttgg 39482309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 47 - 203
Target Start/End: Original strand, 51861792 - 51861945
Alignment:
Q  47 tttgtttcaggaagaactgaagaagcatgggataaagaagtcacaagaaaaattaaggtattatttgtttctatttctatgcatattatctgtttctaat 146  Q
    |||||| |||||||||||||| |||||||||||| |||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51861792 tttgttccaggaagaactgaacaagcatgggatacagaaatcataaggaaaattaaggtattatttgtttctatttctatgcatattatctgtttctaat 51861891  T
Q  147 tccctgcatatgattttttccaacatatggagacaacattggttttgtgtagccttc 203  Q
    |||   ||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  51861892 tcc---catatgattttttccaacatatggagacaacgttggtttggtgtagccttc 51861945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 516 - 596
Target Start/End: Complemental strand, 51861593 - 51861513
Alignment:
Q  516 ttggccgcaagtaagaagaaatcgctcccatgaattttttatccatgatatactttttgaatggacgtggtcttcaattta 596  Q
    ||||||||||||||||||||||||   ||||||||| ||||||| |||||||| || ||||||||||||||||||||||||    
T  51861593 ttggccgcaagtaagaagaaatcgactccatgaattgtttatccctgatatacgttgtgaatggacgtggtcttcaattta 51861513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 325
Target Start/End: Complemental strand, 7807689 - 7807638
Alignment:
Q  274 tctatatttgctaattgctaatgagaattgaggaatgagcggttctattgtt 325  Q
    |||||||||||  ||||||||| ||||||||||| |||||||| ||||||||    
T  7807689 tctatatttgccgattgctaataagaattgaggattgagcggtactattgtt 7807638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 51861734 - 51861776
Alignment:
Q  5 ttttttactgttctattcatttgtgttataggtgggtccttat 47  Q
    |||||| ||||| | ||||||||||||||||||||||||||||    
T  51861734 ttttttcctgttttcttcatttgtgttataggtgggtccttat 51861776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 223 - 464
Target Start/End: Complemental strand, 22158028 - 22157786
Alignment:
Q  223 catatgtaatttctgataactcaaagtaactgatttatggcagtttttctatctatatttgctaattgctaatgagaattgaggaatgagcggttctatt 322  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  22158028 catatgtaatttctgataactcaaagtaactaatgtatggcagtttttctatctatattttctaattgctaatgagaattgaggaatgagcggttctatt 22157929  T
Q  323 gttccaaattacaattgaagagacatttcatctatatttagatagggaaacatgacagggttttaccaaatatcaatatttattatctcttttatcatct 422  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||     
T  22157928 gttccagattacaattgaagagacatttcatctatatttagatagggaaacatgacaggatttcaccaaatatcaatatttattatctcttttatcatcc 22157829  T
Q  423 attggtttcagaacaaagagaaagataca-tactttcatttca 464  Q
    |||| |||||||||||||||||||||||| | |||||||||||    
T  22157828 attgatttcagaacaaagagaaagatacatttctttcatttca 22157786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 47 - 206
Target Start/End: Complemental strand, 22158224 - 22158065
Alignment:
Q  47 tttgtttcaggaagaactgaagaagcatgggataaagaagtcacaagaaaaattaaggtattatttgtttctatttctatgcatattatctgtttctaat 146  Q
    |||||||| | ||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  22158224 tttgtttcggaaagaactgaagaagcatgggatacagaagtcataaggaaaattaaggtattatttgtttctatttctattcatattatctctttctaat 22158125  T
Q  147 tccctgcatatgattttttccaacatatggagacaacattggttttgtgtagccttcttt 206  Q
    ||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||    
T  22158124 tccctgcatatgattttttccaacatatggagaaaacatttgtttggtgtagccttcttt 22158065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 428 - 519
Target Start/End: Complemental strand, 22157790 - 22157704
Alignment:
Q  428 tttcagaacaaagagaaagatacatactttcatttcatcttacacttcttatttttaatttcaattccagcatgaatggatgatttagttgg 519  Q
    |||||||||||||||||||||||||||||||||     ||||||||||||| ||| |||||||||| ||| |||||||||||||||||||||    
T  22157790 tttcagaacaaagagaaagatacatactttcat-----cttacacttcttaatttcaatttcaatttcagtatgaatggatgatttagttgg 22157704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 238 - 307
Target Start/End: Original strand, 9765713 - 9765782
Alignment:
Q  238 ataactcaaagtaactgatttatggcagtttttctatctatatttgctaattgctaatgagaattgagga 307  Q
    ||||||| |||||||||||||||| ||| || ||||||||||||||| |||||||| |||||||||||||    
T  9765713 ataactctaagtaactgatttatgacaggttctctatctatatttgccaattgctattgagaattgagga 9765782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 325 - 517
Target Start/End: Original strand, 9765844 - 9766030
Alignment:
Q  325 tccaaattacaattg-aagagacatttcatctatatttagatagggaaacatgacagggttttaccaaatatcaatatttattatctcttttatcatcta 423  Q
    ||||||||||||||| ||||||||||||||| | |  |||| ||| |||||||||||| ||| ||| || ||| |||||| ||||||||| ||| ||| |    
T  9765844 tccaaattacaattgcaagagacatttcatccaaagatagagagg-aaacatgacagg-tttcaccgaagatctatatttcttatctcttctatgatcca 9765941  T
Q  424 ttggtttcagaacaaagagaaagatacatactttcatttcatcttacacttctta-tttttaatttcaattccagcatgaatggatgatttagtt 517  Q
     || |||||||||||||||  |||||||   ||||| | ||| | |||||||||| |||||||||||||||  || |||||||||| ||||||||    
T  9765942 atgatttcagaacaaagag--agataca---tttca-tccatttgacacttcttattttttaatttcaattttagtatgaatggataatttagtt 9766030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 516 - 596
Target Start/End: Original strand, 22158406 - 22158486
Alignment:
Q  516 ttggccgcaagtaagaagaaatcgctcccatgaattttttatccatgatatactttttgaatggacgtggtcttcaattta 596  Q
    |||||||||||||||||||||||   |  ||||||| ||||| | |||||||| || ||||||||||||||||||||||||    
T  22158406 ttggccgcaagtaagaagaaatcaacctaatgaattgtttattcctgatatacgttgtgaatggacgtggtcttcaattta 22158486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 22158286 - 22158240
Alignment:
Q  1 ctcattttttactgttctattcatttgtgttataggtgggtccttat 47  Q
    |||||||||| ||||| | ||||||||||||||||||||||||||||    
T  22158286 ctcattttttcctgttttcttcatttgtgttataggtgggtccttat 22158240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 198; Significance: 1e-107; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 223 - 452
Target Start/End: Complemental strand, 9333087 - 9332858
Alignment:
Q  223 catatgtaatttctgataactcaaagtaactgatttatggcagtttttctatctatatttgctaattgctaatgagaattgaggaatgagcggttctatt 322  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9333087 catatgtaatttctgataactcaaagtaactgatctatggcagttattctatctatatttgctaattgctaatgagaattgaggaatgagcggttctatt 9332988  T
Q  323 gttccaaattacaattgaagagacatttcatctatatttagatagggaaacatgacagggttttaccaaatatcaatatttattatctcttttatcatct 422  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||     
T  9332987 gttccagattacaattgaagagacatttcatctatctttagatagggaaacatgacagggtttcaccaaatatcaatatttattatctcttttatcatcc 9332888  T
Q  423 attggtttcagaacaaagagaaagatacat 452  Q
    |||| |||||||||||||||||| ||||||    
T  9332887 attgatttcagaacaaagagaaaaatacat 9332858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 47 - 206
Target Start/End: Complemental strand, 9333284 - 9333124
Alignment:
Q  47 tttgtttcaggaagaactgaagaagcatgggataaagaagtcacaagaaaaattaaggtattatttgtttctatttctatgcatattatctgtttctaat 146  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  9333284 tttgtttcaggaagaactgaagaagcatgggatacagaagtcacaaggaaaattaaggtattatttgtttctatttctatgcatgttatctgtttctaat 9333185  T
Q  147 tccctgcatatgatt-ttttccaacatatggagacaacattggttttgtgtagccttcttt 206  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  9333184 tccctacatatgatttttttccaacatatggagacaacattggtttggtgtagccttcttt 9333124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 428 - 519
Target Start/End: Complemental strand, 9332849 - 9332764
Alignment:
Q  428 tttcagaacaaagagaaagatacatactttcatttcatcttacacttcttatttttaatttcaattccagcatgaatggatgatttagttgg 519  Q
    |||||||||||||||||| ||||||||||||||     |||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  9332849 tttcagaacaaagagaaa-atacatactttcat-----cttacacttcttatttttaatttcaatttcagtatgaatggatgatttagttgg 9332764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 516 - 596
Target Start/End: Original strand, 9333471 - 9333551
Alignment:
Q  516 ttggccgcaagtaagaagaaatcgctcccatgaattttttatccatgatatactttttgaatggacgtggtcttcaattta 596  Q
    |||||| |||||| ||||||||||  |||||||||| |||||||||||||||| || ||||||||||||||||||||||||    
T  9333471 ttggccacaagtacgaagaaatcgaccccatgaattgtttatccatgatatacgttgtgaatggacgtggtcttcaattta 9333551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 9333346 - 9333298
Alignment:
Q  1 ctcattttttactgttctattcatttgtgttataggtgggtccttattt 49  Q
    |||||||||| ||||| | ||||||||||||||||||||||||||||||    
T  9333346 ctcatttttttctgttttcttcatttgtgttataggtgggtccttattt 9333298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 325
Target Start/End: Complemental strand, 27273164 - 27273125
Alignment:
Q  286 aattgctaatgagaattgaggaatgagcggttctattgtt 325  Q
    |||||||||||||||||||||| ||||||| |||||||||    
T  27273164 aattgctaatgagaattgaggattgagcggctctattgtt 27273125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 228 - 325
Target Start/End: Complemental strand, 43651807 - 43651710
Alignment:
Q  228 gtaatttctgataactcaaagtaactgatttatggcagtttttctatctatatttgctaattgctaatgagaattgaggaatgagcggttctattgtt 325  Q
    |||| |||| ||||||| |||||||||||||||| ||| || ||||||||||||||| |||||||||||||||||||||| ||| | |||||||||||    
T  43651807 gtaacttctaataactctaagtaactgatttatgacaggttctctatctatatttgccaattgctaatgagaattgaggattgaacagttctattgtt 43651710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 460 - 516
Target Start/End: Complemental strand, 22647907 - 22647851
Alignment:
Q  460 tttcatcttacacttcttatttttaatttcaattccagcatgaatggatgatttagt 516  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||    
T  22647907 tttcatcttacacttcttatttttaatttcaatttcagtatgaatggattatttagt 22647851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 387 - 452
Target Start/End: Complemental strand, 22648003 - 22647938
Alignment:
Q  387 accaaatatcaatatttattatctcttttatcatctattggtttcagaacaaagagaaagatacat 452  Q
    |||||| ||| |||||| ||||||||||||||||| |||| |||||||||| ||| ||||||||||    
T  22648003 accaaacatctatatttcttatctcttttatcatccattgatttcagaacatagataaagatacat 22647938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 325 - 443
Target Start/End: Complemental strand, 43651666 - 43651549
Alignment:
Q  325 tccaaattacaattg-aagagacatttcatctatatttagatagggaaacatgacagggttttaccaaatatcaatatttattatctcttttatcatcta 423  Q
    ||||||||||||||| ||||||||||||||| | |  |||| ||| |||||||||||| ||| ||| || ||| |||||| ||||||||||||| ||| |    
T  43651666 tccaaattacaattgcaagagacatttcatccaaagatagagagg-aaacatgacagg-tttcaccgaagatctatatttcttatctcttttatgatcca 43651569  T
Q  424 ttggtttcagaacaaagaga 443  Q
     || ||||| ||||||||||    
T  43651568 atgatttcataacaaagaga 43651549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 228 - 325
Target Start/End: Complemental strand, 21115016 - 21114919
Alignment:
Q  228 gtaatttctgataactcaaagtaactgatttatggcagtttttctatctatatttgctaattgctaatgagaattgaggaatgagcggttctattgtt 325  Q
    |||| |||| ||||||| ||||||||||||||||  || || ||||||||||||||| |||||||||||||||||||||| ||| | |||||||||||    
T  21115016 gtaacttctaataactctaagtaactgatttatgataggttctctatctatatttgccaattgctaatgagaattgaggattgaacagttctattgtt 21114919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 325 - 517
Target Start/End: Complemental strand, 21114875 - 21114689
Alignment:
Q  325 tccaaattacaattg-aagagacatttcatctatatttagatagggaaacatgacagggttttaccaaatatcaatatttattatctcttttatcatcta 423  Q
    ||||||||||||||| ||||||||||||||| | |  |||| ||| |||||||||||| ||| ||| || ||| |||||| ||||||||||||| ||| |    
T  21114875 tccaaattacaattgcaagagacatttcatccaaagatagagagg-aaacatgacagg-tttcaccgaagatctatatttcttatctcttttatgatcca 21114778  T
Q  424 ttggtttcagaacaaagagaaagatacatactttcatttcatcttacacttctta-tttttaatttcaattccagcatgaatggatgatttagtt 517  Q
     || |||||||||||||||  |||||||   |||||| | || | |||||||||| |||||||||||||||  || ||||||| || ||||||||    
T  21114777 atgatttcagaacaaagag--agataca---tttcatct-atttgacacttcttattttttaatttcaattttagtatgaatgaataatttagtt 21114689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 387 - 452
Target Start/End: Original strand, 27030052 - 27030117
Alignment:
Q  387 accaaatatcaatatttattatctcttttatcatctattggtttcagaacaaagagaaagatacat 452  Q
    |||||| ||| |||||| ||||||||||||||||| |||| |||||||||| ||||||||||||||    
T  27030052 accaaacatctatatttcttatctcttttatcatccattgatttcagaacatagagaaagatacat 27030117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 460 - 516
Target Start/End: Original strand, 27030148 - 27030204
Alignment:
Q  460 tttcatcttacacttcttatttttaatttcaattccagcatgaatggatgatttagt 516  Q
    ||||||||||||||||||||||||||||||||||  || |||||||||| |||||||    
T  27030148 tttcatcttacacttcttatttttaatttcaattttagtatgaatggattatttagt 27030204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 244 - 322
Target Start/End: Original strand, 81348 - 81426
Alignment:
Q  244 caaagtaactgatttatggcagtttttctatctatatttgctaattgctaatgagaattgaggaatgagcggttctatt 322  Q
    |||||||||  |||| ||||||||||||||| |||||||||  |||||| |||||||||||||| |||| |||||||||    
T  81348 caaagtaacaaatttgtggcagtttttctatttatatttgccgattgctgatgagaattgaggattgagaggttctatt 81426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0755 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0755
Description:

Target: scaffold0755; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 387 - 452
Target Start/End: Original strand, 5435 - 5500
Alignment:
Q  387 accaaatatcaatatttattatctcttttatcatctattggtttcagaacaaagagaaagatacat 452  Q
    |||||| ||| |||||| ||||||||||||||||| |||| |||||||||| ||||||||||||||    
T  5435 accaaacatctatatttcttatctcttttatcatccattgatttcagaacatagagaaagatacat 5500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0755; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 516
Target Start/End: Original strand, 5531 - 5584
Alignment:
Q  460 tttcatcttacacttcttatttttaatttcaattccagcatgaatggatgatttagt 516  Q
    |||||||||||||||   |||||||||||||||| ||| |||||||||| |||||||    
T  5531 tttcatcttacactt---atttttaatttcaatttcagtatgaatggattatttagt 5584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 460 - 519
Target Start/End: Complemental strand, 13550249 - 13550190
Alignment:
Q  460 tttcatcttacacttcttatttttaatttcaattccagcatgaatggatgatttagttgg 519  Q
    ||||||| |||||||||||||||| ||||||||| ||| |||||||||| ||||||||||    
T  13550249 tttcatcatacacttcttattttttatttcaatttcagtatgaatggataatttagttgg 13550190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 325
Target Start/End: Complemental strand, 13550421 - 13550382
Alignment:
Q  286 aattgctaatgagaattgaggaatgagcggttctattgtt 325  Q
    |||||||||||||||||||||| |||| ||||||||||||    
T  13550421 aattgctaatgagaattgaggattgaggggttctattgtt 13550382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 233 - 307
Target Start/End: Complemental strand, 24863824 - 24863748
Alignment:
Q  233 ttctgataactcaaagtaact--gatttatggcagtttttctatctatatttgctaattgctaatgagaattgagga 307  Q
    |||| ||||||||||||||||  |||||||| |||||| ||||||||||| ||  |||||||||||| |||||||||    
T  24863824 ttctaataactcaaagtaactttgatttatgacagtttctctatctatatctgtcaattgctaatgacaattgagga 24863748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 465 - 493
Target Start/End: Complemental strand, 24863534 - 24863506
Alignment:
Q  465 tcttacacttcttatttttaatttcaatt 493  Q
    |||||||||||||||||||||||||||||    
T  24863534 tcttacacttcttatttttaatttcaatt 24863506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University