View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20685_low_8 (Length: 550)
Name: NF20685_low_8
Description: NF20685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20685_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 34 - 529
Target Start/End: Original strand, 24200327 - 24200824
Alignment:
| Q |
34 |
tgatacatatggttacaacttacattaaccacttctattttgttaaattattatcggtgcttacatgtagtgttccgtgtttctatcaatacttcatatt |
133 |
Q |
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| T |
24200327 |
tgatacatatggttaaaacttacattaaccacttctattttgtaaaattattatcggtgcttacatgtagtgttccgtgtttctatcaatacttcatatt |
24200426 |
T |
|
| Q |
134 |
aattccaaagataatttgcatgatgaacaaaaccactaaaatcaattatagatactcatcattcaaattaacaatcaacccaaattgcaatacaagtcag |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24200427 |
aattccaaagataatttgcatgatgaacaaaaccactaaaatcaattatagatactcatcattcaaattaacaatcaacccaaattgcaatacaagtcag |
24200526 |
T |
|
| Q |
234 |
gtata--tatatcatatgattcatatcacaatcaaaattcacaatagttcatataggcatcaatttacaatccttatagctgaatttgtgaactcggaat |
331 |
Q |
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||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24200527 |
gtatatatatatcatatgattcatatcacaaacaaaattcacaatagttcatataggcatcaatttacaatccttatagctgaatttgtgaactaggaat |
24200626 |
T |
|
| Q |
332 |
actttgattaataccaacctaactcatcacaggcactgtcatactcagcttcatcagagttttcacctgcatcatcttctgtaacttgagaatccagaga |
431 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
24200627 |
actttgattaataccaacctaactcatcacaggcactgtcatactcagcttcatcagagttttcacctgcatcatcttctataacttgagaatccagaga |
24200726 |
T |
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| Q |
432 |
agattgaaaaaggttttgcaaactatccgttacttgtggtggactttgaggttcaaggtccaaactctcttcgtcgtcaagtatgctataaggacgac |
529 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24200727 |
agattgaaaaagattttgcaaactatccgttacttgtggtggactttgaggttcaaggtccaaactctcttcgtcgtcaagtatgctataaggacgac |
24200824 |
T |
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