View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20686_high_1_N (Length: 449)
Name: NF20686_high_1_N
Description: NF20686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20686_high_1_N |
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Alignment Details
Target: chr8 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 13 - 420
Target Start/End: Original strand, 40958359 - 40958764
Alignment:
| Q |
13 |
cagagcattatcgcgtattagtgaaatttaacgcactaacaggagatgcccatcgtgacaaatgtttggagacactccttcagaatgttcaatacttgtt |
112 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40958359 |
cagagcattatcgtgtattagtgaaatttaacgcactaacaggagatgcccatcgtgacaaatgtttggagacactccttcagaatgttcaatacttgtt |
40958458 |
T |
|
| Q |
113 |
tgacaccgatgacaacatgaagaaaaaagacaaaggtgggtagataattctgatgctatcaacaatggaggaaatagcaaaagtttagaaatcgcaaatg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||| | || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40958459 |
tgacaccgatgacaacatgaagaaaaaagacaaagg-gagt-gacaattctgatgctatcaacaatggaggaaatagcaaaagtttagaaatcgcaaatg |
40958556 |
T |
|
| Q |
213 |
aatgtaaaggcaaagttctgaaggtacttgttgaagtatccaatggtgtttgtgatattttgtgtgggtttatttatattctcacaatcttctatttgct |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40958557 |
aatgtaaaggcaaagttctgaaggtacttgttgaagtatccaatggtgtttgtgatattttgtgtgggtttatttatattctcataatcttctatttgct |
40958656 |
T |
|
| Q |
313 |
ttccttttccttaagggttataatgcatttaccatttttcactctgcagaattccaagccttttgtctggccagatgttgctgttccagctgtagttgct |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40958657 |
ttccttttccttaagggttataatgcatttaccatttttcactctgcagaattccaagccttttgtctggccagatgttgctgttccagctgtagttgct |
40958756 |
T |
|
| Q |
413 |
gtggagaa |
420 |
Q |
| |
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|||||||| |
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| T |
40958757 |
gtggagaa |
40958764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 9 - 420
Target Start/End: Original strand, 40945359 - 40945774
Alignment:
| Q |
9 |
accacagagcattatcgcgtattagtgaaatttaacgcactaacaggagatgcccatcgtgacaaatgtttggagacactccttcagaatgttcaatact |
108 |
Q |
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|||||||||| | | ||| |||||||||| ||||| || ||||||||||| |||||||||||| |||||| || | ||||| ||||||||||||| |
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| T |
40945359 |
accacagagcctcagcgcatattagtgaattttaatgcgttaacaggagatagccatcgtgacaagggtttggcgatgttgcttcaaaatgttcaatact |
40945458 |
T |
|
| Q |
109 |
tgtttgacaccgatgacaacatgaagaaaaaagacaaaggtgggtagataattctgatgctatcaacaatggaggaaatagcaaaagtttagaaatcgca |
208 |
Q |
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|||||||||| ||||| | || |||||| || ||||| | || || ||||||||||| ||||||| ||| ||| ||||||| ||| ||| ||| |
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| T |
40945459 |
tgtttgacactgatgagagcaaaaagaaagaaaacaaatgcggt--gaccgctctgatgctattaacaatgaaggcaatgacaaaagtgtaggaatagca |
40945556 |
T |
|
| Q |
209 |
aatgaatgtaaaggcaaagttctgaaggtacttgttgaagtatccaatggtgtttgtgatattttgtgtgggtttatttatattctcacaatcttctatt |
308 |
Q |
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| T |
40945557 |
aatgaatctaaagacaaagttccgaaggtacttcttgaagtacccaattgtggttgtgatttcttgtgtgggtttattcatattctcataatcttccatt |
40945656 |
T |
|
| Q |
309 |
tgctttccttttccttaagggttataatgcat------ttaccatttttcactctgcagaattccaagccttttgtctggccagatgttgctgttccagc |
402 |
Q |
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|| ||||||||||||| |||||||||||| | ||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
40945657 |
tgttttccttttccttgagggttataatgacttcagcattaccatttttcactctacagaattgcaagtcttttgtctggccagatgttgctgttccagc |
40945756 |
T |
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| Q |
403 |
tgtagttgctgtggagaa |
420 |
Q |
| |
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|||||| ||| ||||||| |
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| T |
40945757 |
tgtagtagctctggagaa |
40945774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 362 - 420
Target Start/End: Complemental strand, 22507833 - 22507775
Alignment:
| Q |
362 |
aattccaagccttttgtctggccagatgttgctgttccagctgtagttgctgtggagaa |
420 |
Q |
| |
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||||| ||| ||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
22507833 |
aattcgaagtcttttgtctggccagatgttgctgttcaagctgtagttgctctggagaa |
22507775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 281 - 332
Target Start/End: Complemental strand, 22831607 - 22831556
Alignment:
| Q |
281 |
tttatttatattctcacaatcttctatttgctttccttttccttaagggtta |
332 |
Q |
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|||||||||||||||||||| ||||||||| ||||||||||||| ||||||| |
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| T |
22831607 |
tttatttatattctcacaattttctatttgttttccttttccttgagggtta |
22831556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 338 - 420
Target Start/End: Complemental strand, 22983739 - 22983658
Alignment:
| Q |
338 |
catttaccatttttcactctgcagaattccaagccttttgtctggccagatgttgctgttccagctgtagttgctgtggagaa |
420 |
Q |
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|||||||||||||||| || |||||||||| | |||||||||| |||||| ||||||||||||||||||||| ||||||| |
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| T |
22983739 |
catttaccatttttcatgctacagaattccatgt-ttttgtctggttagatgtagctgttccagctgtagttgctttggagaa |
22983658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 22843945 - 22843908
Alignment:
| Q |
190 |
caaaagtttagaaatcgcaaatgaatgtaaaggcaaag |
227 |
Q |
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||||||||||||||| |||||||||||||||| ||||| |
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| T |
22843945 |
caaaagtttagaaatagcaaatgaatgtaaagacaaag |
22843908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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