View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20686_high_4 (Length: 337)
Name: NF20686_high_4
Description: NF20686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20686_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 30 - 326
Target Start/End: Complemental strand, 51417994 - 51417698
Alignment:
| Q |
30 |
agctatagtagtgaagtataatcatgacagttttattgtgatcgtccttctttttccattctttcaatgttattggaactccttttaattaattaatttt |
129 |
Q |
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| T |
51417994 |
agctatagtagtgaagtataatcatgacacttttattgtgatcgtccttctttttccattctttctatgttattggaactccttttaattaattaatttt |
51417895 |
T |
|
| Q |
130 |
tctttggcatgctttaaatttgttaattttcgttagttgagacaatttaattaaatgtgtctttgaacaagttctgtcttggtgctaaagagttcaaact |
229 |
Q |
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| T |
51417894 |
tctttggcatgctttaaatttgttaattttcgttagttgagacaatttaattaaatgtgtctttgaacaagttctgtcttggtgctaaagagttcaaact |
51417795 |
T |
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| Q |
230 |
ggtataaagaagcttatcggcaattaaaagttagtaaaatgattcgatcgaaattgatatcacacaccaaaaaggggtggagactttgttatctctg |
326 |
Q |
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| T |
51417794 |
ggtataaagaagcttatcggcaattaaaagttagtaaaatgattcgatcgaaattgatatcacacaccaaaaaggggtggagactttgttatctctg |
51417698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 37 - 115
Target Start/End: Complemental strand, 51412949 - 51412871
Alignment:
| Q |
37 |
gtagtgaagtataatcatgacagttttattgtgatcgtccttctttttccattctttcaatgttattggaactcctttt |
115 |
Q |
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| T |
51412949 |
gtagtgaactataatcatgacagtttcattgtgcttgtctttctttttccttactttccttgttattggaacttctttt |
51412871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 60 - 326
Target Start/End: Complemental strand, 29323615 - 29323357
Alignment:
| Q |
60 |
ttttattgtgatcgtccttctttttccattctttcaatgttattggaactccttttaattaattaatttttctttggcatgctttaaatttgttaatttt |
159 |
Q |
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| T |
29323615 |
ttttattgtgactgtccttctttttcctttctttctatgttattggaactccttttaattaatttatttttctttggcatgcttt------gttaatttt |
29323522 |
T |
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| Q |
160 |
cgttagttgagacaatttaattaaatgtgtctttgaacaagttctgtcttggtgctaaagagttcaaactggtataaagaagcttatcggcaattaaaag |
259 |
Q |
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| T |
29323521 |
cgttagttga--caatttaattaaatgtgtccttgaacaagttctgtcttggtgctaaagagttcaaagtggtataaagaaacttatcagcaattaaaag |
29323424 |
T |
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| Q |
260 |
ttagtaaaatgattcgatcgaaattgatatcacacaccaaaaaggggtggagactttgttatctctg |
326 |
Q |
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| T |
29323423 |
ttagtaaaatgattcgattgaaattgacttcacacaccaaaaaggggtggagactttgttatctctg |
29323357 |
T |
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