View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20686_high_7 (Length: 319)
Name: NF20686_high_7
Description: NF20686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20686_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 55 - 176
Target Start/End: Original strand, 43060673 - 43060794
Alignment:
| Q |
55 |
aagcacgagctgctttaccaaaacttcttcacattgaaaagccatagtgttttatcacgtaataggagaaatacgtttctgttgtattcaagtcaataga |
154 |
Q |
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| T |
43060673 |
aagcgcgagctgctttaccaaaacttcttcacattgaaaagccatagtgttttatcacgtaataggagaaatacgtttctgttgtattcaagtcaataga |
43060772 |
T |
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| Q |
155 |
aaatattaacatttgtgtggta |
176 |
Q |
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| T |
43060773 |
aaatattaacatttgtgtggta |
43060794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 204 - 291
Target Start/End: Original strand, 43060810 - 43060897
Alignment:
| Q |
204 |
catagaatacaatgatgaattttgcaatgatttccatttactgatatcattacaaccattgttatttgatttggtaaatgcttaagtt |
291 |
Q |
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| T |
43060810 |
catagaatacaatgatgaattttgcaatgatttccatttactgatatcattacaaccattgttatttgatttggtaaatgcttaagtt |
43060897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 230 - 291
Target Start/End: Original strand, 4775478 - 4775539
Alignment:
| Q |
230 |
atgatttccatttactgatatcattacaaccattgttatttgatttggtaaatgcttaagtt |
291 |
Q |
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| T |
4775478 |
atgatttccatttacagatattattacaaccattattctttgatttggtcaatgcttaagtt |
4775539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 174
Target Start/End: Original strand, 4775349 - 4775409
Alignment:
| Q |
116 |
ataggagaaatacgtttctgttgtattcaagtcaatagaaaata---ttaacatttgtgtgg |
174 |
Q |
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| T |
4775349 |
ataggataaatacgtt-ctgttatattcaagtcaatagaaaataatgttaacatttgtgtgg |
4775409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 285
Target Start/End: Original strand, 448601 - 448656
Alignment:
| Q |
230 |
atgatttccatttactgatatcattacaaccattgttatttgatttggtaaatgct |
285 |
Q |
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| T |
448601 |
atgatttccatttactgatattattacacccatcattatttgatttggtcaatgct |
448656 |
T |
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