View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20686_high_8 (Length: 317)
Name: NF20686_high_8
Description: NF20686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20686_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 5e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 22 - 288
Target Start/End: Original strand, 12119330 - 12119597
Alignment:
| Q |
22 |
catcatcacataaaggatattcctctaattcctttcaaagatgtcactccaaagccattcnnnnnnnnnn--gacgtcacttcaaaatttcttccataag |
119 |
Q |
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| T |
12119330 |
catcatcacataaagcatattcctgtcatttctttcaaagacgtcactccaaagccattcaaaaaaaaaaaagacgtcactccaaaatttcttacataag |
12119429 |
T |
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| Q |
120 |
aaatcaaattaacttttttaaatgtgagattgaagtgagaataatcaaattaaactaaacacataatacaaaataaataagaagattgagttatgagaaa |
219 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12119430 |
aaatcaaattaacttttttaaatgtgagatagaagtgagaata-tcaaattaaactaaacacataatacaaaataaataagaagattgagttatgagaaa |
12119528 |
T |
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| Q |
220 |
tagttccatacgagggttaaagatttaaagcactttacaattatatgtttcgtatttgaggggtcgtga |
288 |
Q |
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||||| |||||||||||||||||||||||||||||||| ||||||||| || || |||||||||||||| |
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| T |
12119529 |
tagtttcatacgagggttaaagatttaaagcactttaccattatatgtctcatacttgaggggtcgtga |
12119597 |
T |
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