View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20686_low_1 (Length: 997)
Name: NF20686_low_1
Description: NF20686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20686_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 939; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 939; E-Value: 0
Query Start/End: Original strand, 19 - 985
Target Start/End: Complemental strand, 47529011 - 47528045
Alignment:
| Q |
19 |
agattatctgcaaccttaattggtttccacaatagcttctttagacatatgaacctgttcgcgcaaactatattgcaaaaccaattcttctttttaacat |
118 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47529011 |
agattgtctgcaaccttaattggtttccacaatagcttctttagacatatgaacctgttcacgcaaactatattgcaaaaccaattcttctttttaacat |
47528912 |
T |
|
| Q |
119 |
tactctccatgtgactagattcatatcctgttgcctttacacacccaaagtgaaatttctgctcacattgaacacaaacaagaatattgttatcattggt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47528911 |
tactctccatgtgactagattcatatcctgttgcctttacacacccaaagtgaaatttctgctcacattgaacacaaacaagaatattgttatcattggt |
47528812 |
T |
|
| Q |
219 |
atctgtacattcttgtttacgtttaggtcgacaacatattttgcaacaacaagttggacagaaccaatcaccatccggaactcgatcaagatctaaacaa |
318 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47528811 |
atctgtacattcttgtttacatttaggtcgacaacatattttgcaacaacaagttggacagaaccaatcaccatccggaactcgatcaagatctaaacaa |
47528712 |
T |
|
| Q |
319 |
ctgaggtggaatgctgaaggacatcgatcacatagtactatgtcacgtccaaaaccacaaatagaacaaacagtatcattatttgcttcatagtttgctt |
418 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47528711 |
ctgaggtggaatgcagaaggacatcgatcacatagtactatgtcacgtccaaaaccacaaatagaacaaacagtatcattatttgcttcatagtttgctt |
47528612 |
T |
|
| Q |
419 |
cggcaatacaatgattatcgttttgatcacgtgaactcatagcttccctttgacattccaacaacgaccttccatcttccaagaagataccagtggatga |
518 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47528611 |
cggcaatacaatgattatcattttgatcacgtgaactcatagcttccctttgacattccaacaacgaccttccatcttccaagaagataccagtggatga |
47528512 |
T |
|
| Q |
519 |
tgtaggtcttgtacaaccagcatgatccttaaatccagcgagagtgaaattaacattacaacaatcacaaacaataccatcacaatatatactcccgctt |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47528511 |
tgtaggtcttgtacaaccagcatgatccttaaatccagcgagagtgaaattaacattacaacaatcacaaacaataccatcacaatatatactcccgctt |
47528412 |
T |
|
| Q |
619 |
gtaacaacattgttactaccacgacagagcacattagtccctgaaaccaaaactttattctttatcaaccaagaaacaagtgaatacctttcccttatac |
718 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47528411 |
gtaacaacattgttactaccacgacagagcacattagtccctgaaaccaaaactttattctttatcaaccaagaaacaagtgaatacctttcccttatac |
47528312 |
T |
|
| Q |
719 |
cttctctctttaataccttccctcttttaccactacccaccgaattagtaacttctggtttagattgaatcacatgcttctcattttccgttgatgttga |
818 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47528311 |
cttctctctttaataccttccctcttttaccactacccaccgaattagtaacttctggtttagattgaatcacatgcttctcattttccgttgatgttga |
47528212 |
T |
|
| Q |
819 |
taatgtagtaaccgtggcttttttaacagaaatgaaactagaggcttcagaatcctcattagaagtaaattcaaaggatttcaaagacattgctattgct |
918 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47528211 |
taatgtagtaaccgtggcttttttaacagaaatgaaactagaggcttcagaatcctcattagaagtaaattcaaaggatttcaaagacattgctattgct |
47528112 |
T |
|
| Q |
919 |
gctgcttcctcggattcatttggttgctttttcgacagtaatggagacagagaaattgtttttgatg |
985 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
47528111 |
gctgcttcctcggattcatttggttgctttttcggctgtaatggagacagagaaattgtttttgatg |
47528045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 54 - 434
Target Start/End: Complemental strand, 47523628 - 47523248
Alignment:
| Q |
54 |
cttctttagacatatgaacctgttcgcgcaaactatattgcaaaaccaattcttctttttaacattactctccatgtgactagattcatatcctgttgcc |
153 |
Q |
| |
|
|||||||||||||| |||| |||| | ||||||| | ||||||||||||||||||||| | |||| ||||| |||||||| ||| || |||| ||| |
|
|
| T |
47523628 |
cttctttagacataagaacatgttaccacaaactacactgcaaaaccaattcttcttttcaccattgctctcaatgtgacttgatccaagtcctaaagcc |
47523529 |
T |
|
| Q |
154 |
tttacacacccaaagtgaaatttctgctcacattgaacacaaacaagaatattgttatcattggtatctgtacattcttgtttacgtttaggtcgacaac |
253 |
Q |
| |
|
|||||||||||||| ||||| || || |||||||||||||||||||||||||| | |||||| ||||| ||||||||| || | ||| |||||| | | |
|
|
| T |
47523528 |
tttacacacccaaaatgaaacttttgtgcacattgaacacaaacaagaatattgctgtcattgccatctgcacattcttgcttgcatttgggtcgatagc |
47523429 |
T |
|
| Q |
254 |
atattttgcaacaacaagttggacagaaccaatcaccatccggaactcgatcaagatctaaacaactgaggtggaatgctgaaggacatcgatcacatag |
353 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||| ||||||||| ||||||| || |
|
|
| T |
47523428 |
atattttgcaacaacatgttggacagaaccaatcgccatccggaactcgatcgagacctaaacaactgaggtggaatgcagaaggacattgatcacacag |
47523329 |
T |
|
| Q |
354 |
tactatgtcacgtccaaaaccacaaatagaacaaacagtatcattatttgcttcatagtttgcttcggcaatacaatgatt |
434 |
Q |
| |
|
||||||||||| ||| ||| |||||||||||||||||||||| |||||||||||||| ||||||| ||||| ||| ||||| |
|
|
| T |
47523328 |
tactatgtcacctcccaaatcacaaatagaacaaacagtatcgttatttgcttcataatttgctttggcaacacagtgatt |
47523248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 167; E-Value: 6e-89
Query Start/End: Original strand, 402 - 748
Target Start/End: Complemental strand, 47523118 - 47522772
Alignment:
| Q |
402 |
tgcttcatagtttgcttcggcaatacaatgattatcgttttgatcacgtgaactcatagcttccctttgacattccaacaacgaccttccatcttccaag |
501 |
Q |
| |
|
||||||| | |||||||| |||||||||||||| |||| |||||||||||| | ||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
47523118 |
tgcttcagaatttgcttcagcaatacaatgattccgcttttcatcacgtgaactaagagcttccctttgacagtccaacaacgaccttccatctcccaac |
47523019 |
T |
|
| Q |
502 |
aagataccagtggatgatgtaggtcttgtacaaccagcatgatccttaaatccagcgagagtgaaattaacattacaacaatcacaaacaataccatcac |
601 |
Q |
| |
|
||||||| ||||| || | || |||||||||||||||||||| ||| |||||||| || | ||||||||||| ||||||||||||||| || |||||| |
|
|
| T |
47523018 |
aagatactagtggttggtctatgtcttgtacaaccagcatgagcctcaaatccagtgacattgaaattaacacgacaacaatcacaaactatgccatcag |
47522919 |
T |
|
| Q |
602 |
aatatatactcccgcttgtaacaacattgttactaccacgacagagcacattagtccctgaaaccaaaactttattctttatcaaccaagaaacaagtga |
701 |
Q |
| |
|
|| ||| || ||| ||| | ||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
47522918 |
aaaataaaccccctcttttgacaacattgtttctaccacgacagaatacattagtccctgaaaccaaaacttgattctttatcaaccaagaaactagtga |
47522819 |
T |
|
| Q |
702 |
atacctttcccttataccttctctctttaataccttccctcttttac |
748 |
Q |
| |
|
||||||||| ||| ||||||| ||||| ||||||||||||| |||| |
|
|
| T |
47522818 |
atacctttctcttttaccttccgtctttgataccttccctctcttac |
47522772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 712 - 819
Target Start/End: Complemental strand, 47550002 - 47549895
Alignment:
| Q |
712 |
cttataccttctctctttaataccttccctcttttaccactacccaccgaattagtaacttctggtttagattgaatcacatgcttctcattttccgttg |
811 |
Q |
| |
|
||||||||||| ||||||| ||| |||||||||||||||||| |||| ||||||| |||||||| || ||||||| ||||||| |||||||||||| ||| |
|
|
| T |
47550002 |
cttataccttccctctttagtactttccctcttttaccactatccactgaattagaaacttctgattcagattgactcacatgtttctcattttcctttg |
47549903 |
T |
|
| Q |
812 |
atgttgat |
819 |
Q |
| |
|
| |||||| |
|
|
| T |
47549902 |
aagttgat |
47549895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 147 - 386
Target Start/End: Complemental strand, 47550601 - 47550362
Alignment:
| Q |
147 |
tgttgcctttacacacccaaagtgaaatttctgctcacattgaacacaaacaagaatattgttatcattggtatctgtacattcttgtttacgtttaggt |
246 |
Q |
| |
|
|||||||||| ||||||||||||||||||| | ||||||||||||||| ||||||||| | |||| | || || | |||||||||| | ||| ||| |
|
|
| T |
47550601 |
tgttgcctttgcacacccaaagtgaaattttcgttcacattgaacacaagcaagaatatcatcatcaatatcatttgcaaattcttgtttgcatttgggt |
47550502 |
T |
|
| Q |
247 |
cgacaacatattttgcaacaacaagttggacagaaccaatcaccatccggaactcgatcaagatctaaacaa-ctgaggtggaatgctgaaggacatcga |
345 |
Q |
| |
|
||||||||||| | ||||| ||| | ||||| ||||| |||||||||| |||||| || |||||||| | || |||||| | |||||||||| | |
|
|
| T |
47550501 |
tgacaacatattctacaacagcaactcggacataaccacataccatccggatctcgattgggacctaaacaatcaga-gtggaacgaagaaggacatcca |
47550403 |
T |
|
| Q |
346 |
tcacatagtactatgtcacgtccaaaaccacaaatagaaca |
386 |
Q |
| |
|
||||||| || || ||||| |||||||||||||| |||||| |
|
|
| T |
47550402 |
tcacataatattaagtcacctccaaaaccacaaacagaaca |
47550362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 727 - 817
Target Start/End: Complemental strand, 47522679 - 47522589
Alignment:
| Q |
727 |
tttaataccttccctcttttaccactacccaccgaattagtaacttctggtttagattgaatcacatgcttctcattttccgttgatgttg |
817 |
Q |
| |
|
||||| ||||| ||||||||| ||||||| ||||||| | ||| ||||| || | ||| | |||||||||||||||||||| ||||||||| |
|
|
| T |
47522679 |
tttaaaacctttcctcttttatcactacctaccgaatcattaagttctgattcaaatttactcacatgcttctcattttccattgatgttg |
47522589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 855 - 936
Target Start/End: Complemental strand, 47522506 - 47522425
Alignment:
| Q |
855 |
actagaggcttcagaatcctcattagaagtaaattcaaaggatttcaaagacattgctattgctgctgcttcctcggattca |
936 |
Q |
| |
|
|||||||||||||||||| |||| |||||| ||||| |||| |||| |||| ||||||||||||||||||||||||| |
|
|
| T |
47522506 |
actagaggcttcagaatcgtcatcagaagttgattcatctgattcagaagaaattgatattgctgctgcttcctcggattca |
47522425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 907 - 978
Target Start/End: Complemental strand, 47522262 - 47522191
Alignment:
| Q |
907 |
attgctattgctgctgcttcctcggattcatttggttgctttttcgacagtaatggagacagagaaattgtt |
978 |
Q |
| |
|
|||| ||||||||||| |||||| ||||| | ||| |||||||||| | ||||||||||||||||||||| |
|
|
| T |
47522262 |
attgatattgctgctgtttcctcagattctctcggtctctttttcgactgcaatggagacagagaaattgtt |
47522191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 907 - 978
Target Start/End: Complemental strand, 47527727 - 47527656
Alignment:
| Q |
907 |
attgctattgctgctgcttcctcggattcatttggttgctttttcgacagtaatggagacagagaaattgtt |
978 |
Q |
| |
|
|||| |||||||||||||||||| ||||| | || ||| ||||||| |||||||||||| |||||||||| |
|
|
| T |
47527727 |
attgatattgctgctgcttcctcagattctctcagtcgctctttcgactgtaatggagacaaagaaattgtt |
47527656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 21 - 750
Target Start/End: Original strand, 44870789 - 44871509
Alignment:
| Q |
21 |
attatctgcaaccttaattggtttccacaatagcttctttagacatatgaacctgttcgcgcaaactatattgcaaaaccaattcttctttttaacatta |
120 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||| | ||||||| | |||||||||||||||||||||||| ||| |
|
|
| T |
44870789 |
attatctgcaaccttaattggtttccccaatagcttctttagacataagaacatgttcccacaaactacactgcaaaaccaattcttctttttaatattg |
44870888 |
T |
|
| Q |
121 |
ctctccatgtgactagattcatatcctgttgcctttacacacccaaagtgaaatttctgctcacattgaacacaaacaagaatattgttatcattggtat |
220 |
Q |
| |
|
||||| ||||||||||| || ||| ||| | |||||||||||||||||||||||| ||||||||||| ||||| ||||||| |||||| |||||| || |
|
|
| T |
44870889 |
ctctctgtgtgactagatccaaatcttgtagtctttacacacccaaagtgaaatttttgctcacattgtacacatacaagaaaattgttttcattgccat |
44870988 |
T |
|
| Q |
221 |
ctgtacattcttgtttacgtttaggtcgacaacatattttgcaacaacaagttggacagaaccaatcaccatccggaactcgatcaagatctaaacaact |
320 |
Q |
| |
|
||| |||||||||||| | ||| |||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
44870989 |
ctgcacattcttgtttgcatttgggtcgatagcatattttgcaacaacaagttggacagaaccaatcaccatctggaactcgatcaagacctaaacaacc |
44871088 |
T |
|
| Q |
321 |
gaggtggaatgctgaaggacatcgatcacatagtactatgtcacgtccaaaaccacaaatagaacaaacagtatcattatttgcttcatagtttgcttcg |
420 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||| | || |||||||||||| | |||||||| |
|
|
| T |
44871089 |
aaggtggaatgcagaaggacatcgatcacatagtactaagtcacctccaaagccacaaatagaacaaacattgtcgttatttgcttcagaatttgcttcc |
44871188 |
T |
|
| Q |
421 |
gcaatacaatgattatcgttttgatcacgtgaactcatagcttccctttgacattccaacaacgaccttccatcttccaagaagataccagtggatgatg |
520 |
Q |
| |
|
||||||||||| | | ||||||||||| |||||||||||||||| ||||| |||||||| |||||||| ||||||| | |||||| | |
|
|
| T |
44871189 |
ccaatacaatgactccccttttgatcacg---------cgcttccctttgacatttaaacaatgaccttccgtcttccaacaagatactaatggatggtc |
44871279 |
T |
|
| Q |
521 |
taggtcttgtacaaccagcatgatccttaaatccagcgagagtgaaattaacattacaacaatcacaaacaataccatcacaatatatactcccgcttgt |
620 |
Q |
| |
|
| |||||||||||||||||||| ||| ||||||| || |||||||||||| |||||| | |||||| ||||||||| || |||||||||| ||| | |
|
|
| T |
44871280 |
tgtgtcttgtacaaccagcatgagcctcaaatccactgacggtgaaattaacacgacaacagttacaaactataccatcagaaaatatactccctctttt |
44871379 |
T |
|
| Q |
621 |
aacaacattgttactaccacgacagagcacattagtccctgaaaccaaaactttattctttatcaaccaagaaacaagtgaatacctttcccttatacct |
720 |
Q |
| |
|
|||| ||| | |||||||||||||| ||||| ||| |||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
44871380 |
gacaatattttcactaccacgacagaacacatgagttcctgaaaccaaaactttattctctatcaaccaagaaacaatggaataactttcccttatacct |
44871479 |
T |
|
| Q |
721 |
tctctctttaataccttccctcttttacca |
750 |
Q |
| |
|
| ||||||||||||||||||||||||||| |
|
|
| T |
44871480 |
cccctctttaataccttccctcttttacca |
44871509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 743 - 884
Target Start/End: Original strand, 44871616 - 44871757
Alignment:
| Q |
743 |
ttttaccactacccaccgaattagtaacttctggtttagattgaatcacatgcttctcattttccgttgatgttgataatgtagtaaccgtggctttttt |
842 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||||||| ||||||| |||||||||||| ||| |||||||| |||||||||| |||||||| |
|
|
| T |
44871616 |
ttttaccactacccaccgaatttgtaacttctggttcagattgactcacatgattctcattttccattgttgttgataccatagtaaccgtagctttttt |
44871715 |
T |
|
| Q |
843 |
aacagaaatgaaactagaggcttcagaatcctcattagaagt |
884 |
Q |
| |
|
||||||| || ||| ||||| |||||||||||||| |||||| |
|
|
| T |
44871716 |
aacagaactggaacaagaggtttcagaatcctcatcagaagt |
44871757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 153; Significance: 1e-80; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 122 - 434
Target Start/End: Original strand, 9820007 - 9820319
Alignment:
| Q |
122 |
tctccatgtgactagattcatatcctgttgcctttacacacccaaagtgaaatttctgctcacattgaacacaaacaagaatattgttatcattggtatc |
221 |
Q |
| |
|
||||||||||| || ||||| |||| ||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
9820007 |
tctccatgtgattaaattcaattcctacagcctttacacatccaaagtgatatttttgctcacattgaacacaaacaagaatattgttatccttgtgatc |
9820106 |
T |
|
| Q |
222 |
tgtacattcttgtttacgtttaggtcgacaacatattttgcaacaacaagttggacagaaccaatcaccatccggaactcgatcaagatctaaacaactg |
321 |
Q |
| |
|
| ||||||||||||| | ||| |||||| | |||||||||||||||||||||||||||||||| |||||| |||||||||| ||| ||||||||| |
|
|
| T |
9820107 |
tttacattcttgtttgcatttgggtcgatagcatattttgcaacaacaagttggacagaaccattcaccaattggaactcgattgagacctaaacaacct |
9820206 |
T |
|
| Q |
322 |
aggtggaatgctgaaggacatcgatcacatagtactatgtcacgtccaaaaccacaaatagaacaaacagtatcattatttgcttcatagtttgcttcgg |
421 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||| ||| ||||| ||||||||||||||||||||||||| ||||||||||||||||| | ||| ||| | |
|
|
| T |
9820207 |
aggtggaatgcagaagggcatcgatcacatagtgctaagtcacctccaaaaccacaaatagaacaaacattatcattatttgcttcagatttttctttga |
9820306 |
T |
|
| Q |
422 |
caatacaatgatt |
434 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
9820307 |
caacacaatgatt |
9820319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 122 - 434
Target Start/End: Complemental strand, 9853973 - 9853661
Alignment:
| Q |
122 |
tctccatgtgactagattcatatcctgttgcctttacacacccaaagtgaaatttctgctcacattgaacacaaacaagaatattgttatcattggtatc |
221 |
Q |
| |
|
||||||||||| || ||||| |||| |||||||| || ||||||||| |||| ||||||||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
9853973 |
tctccatgtgattaaattcaattcctacagcctttacgcatccaaagtgatatttttgctcacattgaacacaaacaagaatattgttatccttgtgatc |
9853874 |
T |
|
| Q |
222 |
tgtacattcttgtttacgtttaggtcgacaacatattttgcaacaacaagttggacagaaccaatcaccatccggaactcgatcaagatctaaacaactg |
321 |
Q |
| |
|
| ||||||||||||| | ||| |||||| | |||||||||||||||||||||||||||||||| |||||| |||||||||| ||| ||||||||| | |
|
|
| T |
9853873 |
tttacattcttgtttgcatttgggtcgatagcatattttgcaacaacaagttggacagaaccattcaccaattggaactcgattgagacctaaacaaccg |
9853774 |
T |
|
| Q |
322 |
aggtggaatgctgaaggacatcgatcacatagtactatgtcacgtccaaaaccacaaatagaacaaacagtatcattatttgcttcatagtttgcttcgg |
421 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||| ||| ||||| ||||||||||||||||||||||||| ||||||| ||||||||| | ||| ||| | |
|
|
| T |
9853773 |
aggtggaatgcagaagggcatcgatcacatagtgctaagtcacctccaaaaccacaaatagaacaaacattatcattctttgcttcagaattttctttga |
9853674 |
T |
|
| Q |
422 |
caatacaatgatt |
434 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
9853673 |
caacacaatgatt |
9853661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 442 - 697
Target Start/End: Original strand, 9820393 - 9820648
Alignment:
| Q |
442 |
tgatcacgtgaactcatagcttccctttgacattccaacaacgaccttccatcttccaagaagataccagtggatgatgtaggtcttgtacaaccagcat |
541 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| ||||||||||| |||||||||||||| ||||||| |||||||| | || |||||||||||||||||| |
|
|
| T |
9820393 |
tgatcactcgaactcagagcttccctttgacaatccaacaacgatcttccatcttccaacaagatactagtggatggtctatgtcttgtacaaccagcat |
9820492 |
T |
|
| Q |
542 |
gatccttaaatccagcgagagtgaaattaacattacaacaatcacaaacaataccatcacaatatatactcccgcttgtaacaacattgttactaccacg |
641 |
Q |
| |
|
|| || || || | || ||| || |||||| ||||||||||||||| ||| ||||| || | | ||| || ||| | ||||| |||||||| || | |
|
|
| T |
9820493 |
gagactcgaacccggtgatagtaaaggtaacatgacaacaatcacaaactatagcatcagaaaacaaacttcctcttttgacaactttgttactgccctg |
9820592 |
T |
|
| Q |
642 |
acagagcacattagtccctgaaaccaaaactttattctttatcaaccaagaaacaa |
697 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9820593 |
acagaacacattagtccctgaaaccaaaacttgattctttatcaaccaagaaacaa |
9820648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 442 - 697
Target Start/End: Complemental strand, 9853587 - 9853332
Alignment:
| Q |
442 |
tgatcacgtgaactcatagcttccctttgacattccaacaacgaccttccatcttccaagaagataccagtggatgatgtaggtcttgtacaaccagcat |
541 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| ||||||||||| |||||||||||||| ||||||| |||||||| | || |||||||||||||||||| |
|
|
| T |
9853587 |
tgatcactcgaactcagagcttccctttgacaatccaacaacgatcttccatcttccaacaagatactagtggatggtctatgtcttgtacaaccagcat |
9853488 |
T |
|
| Q |
542 |
gatccttaaatccagcgagagtgaaattaacattacaacaatcacaaacaataccatcacaatatatactcccgcttgtaacaacattgttactaccacg |
641 |
Q |
| |
|
|| || || || | || ||| || |||||| ||||||||||||||| ||| ||||| || | | ||| || ||| | ||||| |||||||| || | |
|
|
| T |
9853487 |
gagactcgaacccggtgatagtaaaggtaacatgacaacaatcacaaactatagcatcagaaaacaaacttcctcttttgacaactttgttactgccctg |
9853388 |
T |
|
| Q |
642 |
acagagcacattagtccctgaaaccaaaactttattctttatcaaccaagaaacaa |
697 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9853387 |
acagaacacattagtccctgaaaccaaaacttgattctttatcaaccaagaaacaa |
9853332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 106
Target Start/End: Original strand, 9819924 - 9820009
Alignment:
| Q |
21 |
attatctgcaaccttaattggtttccacaatagcttctttagacatatgaacctgttcgcgcaaactatattgcaaaaccaattct |
106 |
Q |
| |
|
|||||||||||||||||||||||| | || | |||||||||||||| |||| ||||| | ||||| | | ||||||||||||||| |
|
|
| T |
9819924 |
attatctgcaaccttaattggttttcctaacaacttctttagacataagaacatgttcccacaaaccacactgcaaaaccaattct |
9820009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 9854056 - 9853971
Alignment:
| Q |
21 |
attatctgcaaccttaattggtttccacaatagcttctttagacatatgaacctgttcgcgcaaactatattgcaaaaccaattct |
106 |
Q |
| |
|
|||||||||||||||||||||||| | || | |||||||||||||| |||| ||||| | ||||| | | ||||||||||||||| |
|
|
| T |
9854056 |
attatctgcaaccttaattggttttcctaacaacttctttagacataagaacatgttcccacaaaccacactgcaaaaccaattct |
9853971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 1e-40; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 159 - 388
Target Start/End: Complemental strand, 21062204 - 21061975
Alignment:
| Q |
159 |
acacccaaagtgaaatttctgctcacattgaacacaaacaagaatattgttatcattggtatctgtacattcttgtttacgtttaggtcgacaacatatt |
258 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| || || ||| |||||||| | || ||| || |||||||| |
|
|
| T |
21062204 |
acacccaaattgaaatttttgctcacattgaacacacgcaagaatattgttatcattaccatttgcacactcttgtttgcactttggttgataacatatt |
21062105 |
T |
|
| Q |
259 |
ttgcaacaacaagttggacagaaccaatcaccatccggaactcgatcaagatctaaacaactgaggtggaatgctgaaggacatcgatcacatagtacta |
358 |
Q |
| |
|
||||| | ||||||||||| ||| |||||| |||| ||||| ||| ||| ||||| ||| | |||||||||| ||||||||||||||||||| || | |
|
|
| T |
21062104 |
ttgcagccacaagttggacgaaactaatcactatccaaaactccatcgagacctaaagaacagcggtggaatgcagaaggacatcgatcacataatattg |
21062005 |
T |
|
| Q |
359 |
tgtcacgtccaaaaccacaaatagaacaaa |
388 |
Q |
| |
|
|||||| |||||||||||||||||||||| |
|
|
| T |
21062004 |
tgtcacccccaaaaccacaaatagaacaaa |
21061975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 159 - 388
Target Start/End: Complemental strand, 21081597 - 21081368
Alignment:
| Q |
159 |
acacccaaagtgaaatttctgctcacattgaacacaaacaagaatattgttatcattggtatctgtacattcttgtttacgtttaggtcgacaacatatt |
258 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| || || ||| |||||||| | || ||| || |||||||| |
|
|
| T |
21081597 |
acacccaaattgaaatttttgctcacattgaacacacgcaagaatattgttatcattaccatttgcacactcttgtttgcactttggttgataacatatt |
21081498 |
T |
|
| Q |
259 |
ttgcaacaacaagttggacagaaccaatcaccatccggaactcgatcaagatctaaacaactgaggtggaatgctgaaggacatcgatcacatagtacta |
358 |
Q |
| |
|
||||| | ||||||||||| ||| |||||| |||| ||||| ||| ||| ||||| ||| | |||||||||| ||||||||||||||||||| || | |
|
|
| T |
21081497 |
ttgcagccacaagttggacgaaactaatcactatccaaaactccatcgagacctaaagaacagcggtggaatgcagaaggacatcgatcacataatattg |
21081398 |
T |
|
| Q |
359 |
tgtcacgtccaaaaccacaaatagaacaaa |
388 |
Q |
| |
|
|||||| |||||||||||||||||||||| |
|
|
| T |
21081397 |
tgtcacccccaaaaccacaaatagaacaaa |
21081368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 151 - 390
Target Start/End: Original strand, 21080674 - 21080911
Alignment:
| Q |
151 |
gcctttacacacccaaagtgaaatttctgctcacattgaacacaaacaagaatattgttatcattggtatctgtacattcttgtttacgtttaggtcgac |
250 |
Q |
| |
|
||||||||||||||||||||||| || | | |||||||| ||||||||| ||| ||||| | ||| || || ||||||| |||| | |||||||||| |
|
|
| T |
21080674 |
gcctttacacacccaaagtgaaaatttt-cacacattgatcacaaacaa-aatgttgttttgatttccatatgcacattctggttttcatttaggtcgat |
21080771 |
T |
|
| Q |
251 |
aacatattttgcaacaacaagttggacagaaccaatcaccatccggaactcgatcaagatctaaacaactgaggtggaatgctgaaggacatcgatcaca |
350 |
Q |
| |
|
| |||||||||||||||||| || || ||||||||||||||||| ||||||||| ||| ||||||||| ||| |||| ||| |||| | |||||| |
|
|
| T |
21080772 |
agcatattttgcaacaacaaattcgaaagaaccaatcaccatccagaactcgattgagacctaaacaaccatggtttaatgaagaaagacaccaatcaca |
21080871 |
T |
|
| Q |
351 |
tagtactatgtcacgtccaaaaccacaaatagaacaaaca |
390 |
Q |
| |
|
||||||||||||| ||||||||| |||||| ||||||| |
|
|
| T |
21080872 |
aagtactatgtcacaaccaaaaccaaaaataggacaaaca |
21080911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 159 - 390
Target Start/End: Original strand, 21061289 - 21061518
Alignment:
| Q |
159 |
acacccaaagtgaaatttctgctcacattgaacacaaacaagaatattgttatcattggtatctgtacattcttgtttacgtttaggtcgacaacatatt |
258 |
Q |
| |
|
||||||||||||||| || | | |||||||| ||||||||| ||| ||||| | ||| || || ||||||| |||| | |||||||||| | |||||| |
|
|
| T |
21061289 |
acacccaaagtgaaaatttt-cacacattgatcacaaacaa-aatgttgttttgatttccatatgcacattctggttttcatttaggtcgatagcatatt |
21061386 |
T |
|
| Q |
259 |
ttgcaacaacaagttggacagaaccaatcaccatccggaactcgatcaagatctaaacaactgaggtggaatgctgaaggacatcgatcacatagtacta |
358 |
Q |
| |
|
|||||||||||| || || |||||||||| |||||| ||||||||| ||| ||||||||| ||| |||| ||| |||| | |||||| ||||||| |
|
|
| T |
21061387 |
ttgcaacaacaaattcgaaagaaccaatccccatccagaactcgattgagacctaaacaaccatggtttaatgaagaaagacaccaatcacaaagtacta |
21061486 |
T |
|
| Q |
359 |
tgtcacgtccaaaaccacaaatagaacaaaca |
390 |
Q |
| |
|
|||||| ||||||||| |||||| ||||||| |
|
|
| T |
21061487 |
tgtcacaaccaaaaccaaaaataggacaaaca |
21061518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University