View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20686_low_2 (Length: 431)

Name: NF20686_low_2
Description: NF20686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20686_low_2
NF20686_low_2
[»] chr6 (25 HSPs)
chr6 (28-424)||(9411230-9411626)
chr6 (206-315)||(6423201-6423310)
chr6 (188-309)||(6432151-6432272)
chr6 (206-362)||(6603208-6603364)
chr6 (188-309)||(6409996-6410117)
chr6 (206-311)||(11936281-11936386)
chr6 (206-311)||(11948261-11948366)
chr6 (207-362)||(6415903-6416058)
chr6 (197-307)||(6394856-6394966)
chr6 (206-315)||(7994188-7994297)
chr6 (197-250)||(12102315-12102368)
chr6 (32-98)||(6426712-6426778)
chr6 (206-292)||(6596934-6597020)
chr6 (206-304)||(14802331-14802429)
chr6 (216-309)||(10579752-10579845)
chr6 (62-98)||(10579598-10579634)
chr6 (139-309)||(6402850-6403023)
chr6 (206-293)||(6586116-6586203)
chr6 (40-99)||(6594446-6594505)
chr6 (32-98)||(6395065-6395131)
chr6 (225-362)||(6585262-6585399)
chr6 (58-98)||(6416167-6416207)
chr6 (32-96)||(6589155-6589219)
chr6 (206-250)||(6589329-6589373)
chr6 (199-251)||(9410750-9410802)
[»] chr1 (10 HSPs)
chr1 (32-306)||(9586632-9586906)
chr1 (35-304)||(9581064-9581335)
chr1 (233-395)||(7554392-7554554)
chr1 (32-98)||(19468331-19468397)
chr1 (206-304)||(19468505-19468603)
chr1 (34-177)||(7554544-7554687)
chr1 (222-304)||(43634902-43634984)
chr1 (38-100)||(29658800-29658862)
chr1 (58-100)||(29691335-29691377)
chr1 (58-100)||(29718847-29718889)
[»] chr2 (3 HSPs)
chr2 (206-394)||(45245091-45245279)
chr2 (227-312)||(1037691-1037776)
chr2 (45-100)||(1037506-1037561)
[»] chr3 (9 HSPs)
chr3 (216-362)||(13470748-13470894)
chr3 (206-362)||(51113787-51113943)
chr3 (32-96)||(51764272-51764336)
chr3 (32-98)||(13470564-13470630)
chr3 (206-360)||(51764446-51764600)
chr3 (197-307)||(51120890-51121000)
chr3 (32-96)||(51113613-51113677)
chr3 (35-100)||(514560-514625)
chr3 (206-250)||(1657300-1657344)
[»] chr5 (7 HSPs)
chr5 (48-177)||(41901383-41901512)
chr5 (207-362)||(41901542-41901697)
chr5 (48-177)||(41889399-41889528)
chr5 (60-177)||(32267597-32267714)
chr5 (204-360)||(38267560-38267716)
chr5 (216-307)||(20478098-20478189)
chr5 (32-97)||(28525213-28525278)
[»] chr4 (33 HSPs)
chr4 (206-394)||(1552773-1552964)
chr4 (197-313)||(1524483-1524599)
chr4 (206-306)||(1548430-1548530)
chr4 (199-315)||(570335-570451)
chr4 (206-394)||(1489367-1489555)
chr4 (31-99)||(8183858-8183926)
chr4 (227-306)||(55505135-55505214)
chr4 (225-362)||(640852-640989)
chr4 (227-312)||(55908755-55908840)
chr4 (36-96)||(547119-547179)
chr4 (278-362)||(1517574-1517658)
chr4 (40-172)||(1600549-1600681)
chr4 (206-309)||(1513413-1513516)
chr4 (35-98)||(1548258-1548321)
chr4 (206-361)||(8187097-8187252)
chr4 (40-99)||(12121294-12121353)
chr4 (206-250)||(532238-532282)
chr4 (278-362)||(1495997-1496081)
chr4 (206-362)||(12121463-12121619)
chr4 (58-98)||(21834236-21834276)
chr4 (197-316)||(1537764-1537883)
chr4 (45-100)||(55908570-55908625)
chr4 (206-316)||(546896-547006)
chr4 (58-96)||(570737-570775)
chr4 (58-99)||(3438421-3438462)
chr4 (31-84)||(53761596-53761649)
chr4 (32-96)||(570551-570615)
chr4 (31-99)||(641115-641183)
chr4 (206-250)||(1519148-1519192)
chr4 (206-250)||(1600468-1600512)
chr4 (264-316)||(3438629-3438681)
chr4 (71-103)||(7308086-7308118)
chr4 (204-244)||(21834382-21834422)
[»] chr8 (11 HSPs)
chr8 (45-96)||(17627901-17627952)
chr8 (206-313)||(18315279-18315386)
chr8 (32-100)||(18315102-18315170)
chr8 (47-99)||(32151501-32151553)
chr8 (206-313)||(32151287-32151394)
chr8 (206-252)||(21235605-21235651)
chr8 (206-307)||(17636407-17636508)
chr8 (206-304)||(27922503-27922601)
chr8 (227-315)||(34936190-34936278)
chr8 (66-96)||(17636260-17636290)
chr8 (206-250)||(28246301-28246345)
[»] chr7 (3 HSPs)
chr7 (197-315)||(15092148-15092266)
chr7 (58-98)||(10614794-10614834)
chr7 (139-175)||(7977705-7977741)
[»] scaffold0105 (1 HSPs)
scaffold0105 (34-99)||(644-709)
[»] scaffold0295 (1 HSPs)
scaffold0295 (227-316)||(651-740)


Alignment Details
Target: chr6 (Bit Score: 345; Significance: 0; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 28 - 424
Target Start/End: Complemental strand, 9411626 - 9411230
Alignment:
Q  28 caattggttaagagataaaaacatcaaaaggtttgcttccattttccccaatttgcagctgcttgatttgagccgatgttgtaacataactaatgaaggt 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||    
T  9411626 caattggttaagagataaaaacatcaaaaggtttgcttccattttccccaatttgcagctgcttgatttgagcggatgttgtaacatatctaacgaaggt 9411527  T
Q  128 actttgcacgctttaaggagatgtggtaacattagacatttgaacctatcttgtacttgtgtgacgctccatggattcaactttgaacttcccaagctgg 227  Q
    | |||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||  ||||||||||||    
T  9411526 attttgcaggttttaaggagatgtggtaacattagacatttgaacctagcttgtacttgtgtgacgctcgatggattgaactttgaggttcccaagctgg 9411427  T
Q  228 aggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggacttttgcaactgttactgcaatgctgtca 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9411426 aggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggacttttgcaactgttactgcaatgctgtca 9411327  T
Q  328 taatgtcagagataagggagtgatgcatgtggtaggaaattgcctgcaactcaaagagatcaatttgcggctttgtcatcgagtgtatgctaatatt 424  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  9411326 taatgtcagagataagggagtgatgcatgtggtaggaaattgcctgcaactcaaagagatcaatttgcggcgttgtcatcgagtgcatgctaatatt 9411230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 206 - 315
Target Start/End: Complemental strand, 6423310 - 6423201
Alignment:
Q  206 aactttgaacttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggacttttgc 305  Q
    |||||| || ||||||||||||||||||||||||||||| ||||| | |||  |||| ||| |||||||| ||||||||||| |||| ||||  ||||||    
T  6423310 aacttttaagttcccaagctggaggtgttgaacttgtcaaatacaagagttagcgataaaacactctatgcgatctcaaagagttgttgtgggattttgc 6423211  T
Q  306 aactgttact 315  Q
    |||| |||||    
T  6423210 aactattact 6423201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 188 - 309
Target Start/End: Complemental strand, 6432272 - 6432151
Alignment:
Q  188 gtgacgctccatggattcaactttgaacttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaaga 287  Q
    |||| ||| |||||| | ||||||||| ||||||||||| ||||||||||||||||| ||||| | |||   ||||||| ||| |||| ||||| |||||    
T  6432272 gtgaagctacatggaatgaactttgaagttcccaagctgaaggtgttgaacttgtcaaatacaagcgttgatgatgaaacactttatgtgatcttaaaga 6432173  T
Q  288 attgtcgtggacttttgcaact 309  Q
    ||||| |||| ||| |||||||    
T  6432172 attgttgtgggcttctgcaact 6432151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 206 - 362
Target Start/End: Original strand, 6603208 - 6603364
Alignment:
Q  206 aactttgaacttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggacttttgc 305  Q
    ||||||| ||||||||||||  |||||||| ||||| || |||||||||||   ||||||| | |||||| ||||||||||| ||||| ||| ||||||     
T  6603208 aactttgtacttcccaagctacaggtgttggacttggcagatacaggtgttgatgatgaaacagtctatgcgatctcaaagagttgtcctgggcttttgg 6603307  T
Q  306 aactgttactgcaatgctgtcataatgtcagagataagggagtgatgcatgtggtag 362  Q
    |||| ||| || |||  ||| || |||||| ||| || |||||||  ||||||||||    
T  6603308 aactattattgaaatattgttattatgtcacagagaaaggagtgaaacatgtggtag 6603364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 188 - 309
Target Start/End: Complemental strand, 6410117 - 6409996
Alignment:
Q  188 gtgacgctccatggattcaactttgaacttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaaga 287  Q
    |||| ||| |||||| | ||||||||| ||||||||||| |||||||||||| |||| ||||| | |||   |||||||  || |||| |||||||||||    
T  6410117 gtgaagctacatggaatgaactttgaagttcccaagctgaaggtgttgaactagtcaaatacaagcgttgatgatgaaactctttatgtgatctcaaaga 6410018  T
Q  288 attgtcgtggacttttgcaact 309  Q
    ||||| || | |||||||||||    
T  6410017 attgttgtcggcttttgcaact 6409996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 206 - 311
Target Start/End: Original strand, 11936281 - 11936386
Alignment:
Q  206 aactttgaacttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggacttttgc 305  Q
    ||||||||| ||||||| |||||||||||| ||||||||| |||| | |||  |||| ||  |||||||  ||||||||||| |||| |||| |||||||    
T  11936281 aactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgataaatcactctattggatctcaaagagttgtagtgggcttttgc 11936380  T
Q  306 aactgt 311  Q
    ||||||    
T  11936381 aactgt 11936386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 206 - 311
Target Start/End: Original strand, 11948261 - 11948366
Alignment:
Q  206 aactttgaacttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggacttttgc 305  Q
    ||||||||| ||||||| |||||||||||| ||||||||| |||| | |||  |||| ||  |||||||  ||||||||||| |||| |||| |||||||    
T  11948261 aactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgataaatcactctattggatctcaaagagttgtagtgggcttttgc 11948360  T
Q  306 aactgt 311  Q
    ||||||    
T  11948361 aactgt 11948366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 207 - 362
Target Start/End: Complemental strand, 6416058 - 6415903
Alignment:
Q  207 actttgaacttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggacttttgca 306  Q
    |||||| | ||||||| ||||||||||||||||||||| |||||   |||   ||| |||  ||||||| |||||||||||||||| | || ||||||||    
T  6416058 actttgtagttcccaacctggaggtgttgaacttgtcaaatacaaaggttaatgataaaactctctatgtgatctcaaagaattgtagcgggcttttgca 6415959  T
Q  307 actgttactgcaatgctgtcataatgtcagagataagggagtgatgcatgtggtag 362  Q
    ||| |||||  |||  ||| ||||||||| |||   ||||||||  ||||||||||    
T  6415958 actattacttgaattttgtgataatgtcacagaagtgggagtgaaacatgtggtag 6415903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 197 - 307
Target Start/End: Complemental strand, 6394966 - 6394856
Alignment:
Q  197 catggattcaactttgaacttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtg 296  Q
    |||||| | ||||||| | ||||| ||||||||||||||||||||||| ||||| | |||   |||||||  || | || |||||||||||||||| |||    
T  6394966 catggaatgaactttgcagttcccgagctggaggtgttgaacttgtcaaatacaagcgttgatgatgaaactctttctgtgatctcaaagaattgttgtg 6394867  T
Q  297 gacttttgcaa 307  Q
    | |||||||||    
T  6394866 ggcttttgcaa 6394856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 206 - 315
Target Start/End: Original strand, 7994188 - 7994297
Alignment:
Q  206 aactttgaacttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggacttttgc 305  Q
    ||||||| | |||| ||||| |||||||||||| ||||| ||||| | |||   || |||| ||| |||| ||||||||||||||||  |||||||||||    
T  7994188 aactttgtagttccgaagctagaggtgttgaacatgtcaaatacaagggttaatgacgaaacactatatgtgatctcaaagaattgttctggacttttgc 7994287  T
Q  306 aactgttact 315  Q
    |||| |||||    
T  7994288 aactattact 7994297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 12102368 - 12102315
Alignment:
Q  197 catggattcaactttgaacttcccaagctggaggtgttgaacttgtcatataca 250  Q
    |||||||| ||||||||| ||||||| ||||||||||||||||||||| |||||    
T  12102368 catggattgaactttgaagttcccaaactggaggtgttgaacttgtcacataca 12102315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 6426778 - 6426712
Alignment:
Q  32 tggttaagagataaaaacatcaaaaggtttgcttccattttccccaatttgcagctgcttgatttga 98  Q
    |||||||| ||| ||| ||||| || || ||||||||||||||||||||| ||||| ||||||||||    
T  6426778 tggttaagtgatgaaatcatcataatgtatgcttccattttccccaatttacagctacttgatttga 6426712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 292
Target Start/End: Original strand, 6596934 - 6597020
Alignment:
Q  206 aactttgaacttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgt 292  Q
    ||||||||| ||||| |||||||||||||||||||||||  ||||  ||||   ||||||| |||||| |  |||||||||||||||    
T  6596934 aactttgaaattccccagctggaggtgttgaacttgtcaagtacaaatgttgatgatgaaacactctacgctatctcaaagaattgt 6597020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 304
Target Start/End: Complemental strand, 14802429 - 14802331
Alignment:
Q  206 aactttgaacttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggacttttg 304  Q
    ||||||||| |||||||| |||| |||||||| |||||| |||||   |||   ||||||| |||||||| ||| |||||||||||| |||| ||||||    
T  14802429 aactttgaagttcccaagatggaagtgttgaatttgtcaaatacaaaggttgatgatgaaacactctatgtgatttcaaagaattgttgtggtcttttg 14802331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 216 - 309
Target Start/End: Original strand, 10579752 - 10579845
Alignment:
Q  216 ttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggacttttgcaact 309  Q
    ||||| |||||||||||||||||||||||||||||   |||   ||| ||| |||||||  |||||||||||||||| || | |||||| ||||    
T  10579752 ttccccagctggaggtgttgaacttgtcatatacaaaagttgatgataaaacactctattcgatctcaaagaattgttgtcggcttttggaact 10579845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 98
Target Start/End: Original strand, 10579598 - 10579634
Alignment:
Q  62 gcttccattttccccaatttgcagctgcttgatttga 98  Q
    |||||| ||||||||||||||||||||||||||||||    
T  10579598 gcttcctttttccccaatttgcagctgcttgatttga 10579634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 309
Target Start/End: Complemental strand, 6403023 - 6402850
Alignment:
Q  139 tttaaggagatgtggtaacattagacatttgaacctatct---tgtacttgtgtgacgctccatggattcaactttgaacttcccaagctggaggtgttg 235  Q
    ||||||||||||| |||||||||| ||||||||| || ||   ||| |  | |||| ||| | |||| | ||||||| | ||||| | || || ||||||    
T  6403023 tttaaggagatgttgtaacattaggcatttgaacttaactgggtgttcaagagtgaagctacttggaataaactttgcagttccccaactagaagtgttg 6402924  T
Q  236 aacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggacttttgcaact 309  Q
    ||||||||| ||||    |||   ||||||| |||||||| |||||||||||||||| |||| |||||| ||||    
T  6402923 aacttgtcagatacgaaggttgatgatgaaacactctatgtgatctcaaagaattgtagtgggcttttgaaact 6402850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 293
Target Start/End: Original strand, 6586116 - 6586203
Alignment:
Q  206 aactttgaacttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtc 293  Q
    ||||||| |||||||||||| ||||||||| | |||||| | |||| ||||   ||||||| ||||| || ||||||||||| |||||    
T  6586116 aactttgtacttcccaagctagaggtgttggatttgtcaaaaacagatgttcatgatgaaacactctgtgcgatctcaaagatttgtc 6586203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 6594446 - 6594505
Alignment:
Q  40 agataaaaacatcaaaaggtttgcttccattttccccaatttgcagctgcttgatttgag 99  Q
    |||| ||||||||| |  ||||||||| |||||||||| |||| ||||||||||||||||    
T  6594446 agatgaaaacatcatattgtttgcttctattttccccactttggagctgcttgatttgag 6594505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 6395131 - 6395065
Alignment:
Q  32 tggttaagagataaaaacatcaaaaggtttgcttccattttccccaatttgcagctgcttgatttga 98  Q
    ||||||| |||| |||  |||| || |||| ||||||||||||||||||| ||||| ||||||||||    
T  6395131 tggttaatagatgaaataatcataatgtttacttccattttccccaatttacagctacttgatttga 6395065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 362
Target Start/End: Original strand, 6585262 - 6585399
Alignment:
Q  225 tggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggacttttgcaactgttactgcaatgctg 324  Q
    ||||||| |||||||||||| |||||   |||   ||||||| |||||||| ||||||||||| ||||  ||  |||||| |||| |||||| || | ||    
T  6585262 tggaggtattgaacttgtcagatacaaaggttgatgatgaaacactctatgtgatctcaaagagttgttctgcgcttttggaactattactgaaaggttg 6585361  T
Q  325 tcataatgtcagagataagggagtgatgcatgtggtag 362  Q
    | | ||||||| ||| |||||| |||  ||||||||||    
T  6585362 tgaaaatgtcacagagaagggactgaaacatgtggtag 6585399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 6416207 - 6416167
Alignment:
Q  58 gtttgcttccattttccccaatttgcagctgcttgatttga 98  Q
    |||| ||||||  ||||||||||||||||||||||||||||    
T  6416207 gttttcttccaacttccccaatttgcagctgcttgatttga 6416167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 6589155 - 6589219
Alignment:
Q  32 tggttaagagataaaaacatcaaaaggtttgcttccattttccccaatttgcagctgcttgattt 96  Q
    |||||||| |||  ||| |||| || ||||||||||||||||||||||||  || ||||||||||    
T  6589155 tggttaagtgatgcaaatatcataatgtttgcttccattttccccaatttagaggtgcttgattt 6589219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 6589329 - 6589373
Alignment:
Q  206 aactttgaacttcccaagctggaggtgttgaacttgtcatataca 250  Q
    ||||||| | |||||| |||||||||||||||||||||| |||||    
T  6589329 aactttgtagttcccatgctggaggtgttgaacttgtcaaataca 6589373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 9410802 - 9410750
Alignment:
Q  199 tggattcaactttgaacttcccaagctggaggtgttgaacttgtcatatacag 251  Q
    |||||| |||||||||  ||||||| ||||||||||||| |||||| ||||||    
T  9410802 tggattgaactttgaagctcccaagttggaggtgttgaatttgtcacatacag 9410750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 4e-39; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 32 - 306
Target Start/End: Complemental strand, 9586906 - 9586632
Alignment:
Q  32 tggttaagagataaaaacatcaaaaggtttgcttccattttccccaatttgcagctgcttgatttgagccgatgttgtaacataactaatgaaggtactt 131  Q
    |||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||| || |||  || ||||||||| ||||   ||||| ||    
T  9586906 tggttaagagataaaaacatcataatgtttgcttcaattttccccaatttgcagctgcttgatctgtgccattgctgtaacatatctaaaagaggtattt 9586807  T
Q  132 tgcacgctttaaggagatgtggtaacattagacatttgaacctatcttgtacttgtgtgacgctccatggattcaactttgaacttcccaagctggaggt 231  Q
      || | ||||   |||||| || | ||||||||||||||| |||||||| ||  ||| |  || | || | | || |||||| | |||||||| |||||    
T  9586806 gtcaagttttacaaagatgttgtcagattagacatttgaacatatcttgttctcctgtaaacctacttgaaattaattttgaagtccccaagctagaggt 9586707  T
Q  232 gttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggacttttgca 306  Q
    |||||||||||||||||||| ||||   ||||||| ||| |||| || ||||| |||||||||||||||||||||    
T  9586706 gttgaacttgtcatatacagatgttaatgatgaaacactttatgtgacctcaatgaattgtcgtggacttttgca 9586632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 35 - 304
Target Start/End: Complemental strand, 9581335 - 9581064
Alignment:
Q  35 ttaagagataaaaacatcaaaaggtttgcttccattttccccaatttgcagctgcttgatttgagccgatgttgtaacataactaatgaaggtactttgc 134  Q
    ||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||| || |||  || ||||||||| ||||   ||||| ||  |    
T  9581335 ttaagagataaaaacatcataatgtttgcttcaattttccccaatttgcagctgcttgatctgcgccattgctgtaacatatctaaaagaggtatttgtc 9581236  T
Q  135 acgctttaaggagatgtggtaacattagacatttgaacctatcttgtacttgtgtgacgctccatggattcaactttgaacttcccaagctggaggtgtt 234  Q
    | | |||||  |||||| || | ||||||||||||||| |||||||| ||  ||| |  || | || | | || |||||||| |||||||| ||||||||    
T  9581235 aagttttaaaaagatgttgtcagattagacatttgaacatatcttgttctcctgtaaaactacttgaaattaattttgaactccccaagctagaggtgtt 9581136  T
Q  235 gaacttgtcatatac--aggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggacttttg 304  Q
    ||||||||||| |||  |   |||   |||||||  || |||| ||||||||||||||||||||||||||||    
T  9581135 gaacttgtcatgtacaaaaaagttaatgatgaaacgctttatgtgatctcaaagaattgtcgtggacttttg 9581064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 233 - 395
Target Start/End: Complemental strand, 7554554 - 7554392
Alignment:
Q  233 ttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggacttttgcaactgttactgcaatgctgtcataatg 332  Q
    |||||||| ||||||||| |||||   ||||||  |||||||  ||||||||||| |||| |||||||||| |||||||||||| || | ||| ||||||    
T  7554554 ttgaacttatcatatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttactgaaaggatgtgataatg 7554455  T
Q  333 tcagagataagggagtgatgcatgtggtaggaaattgcctgcaactcaaagagatcaatttgc 395  Q
    ||| ||| |||||||||| ||||||||||| ||| |||  || |||||||||||| |||||||    
T  7554454 tcacagaaaagggagtgaagcatgtggtagaaaactgcacgctactcaaagagattaatttgc 7554392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 19468331 - 19468397
Alignment:
Q  32 tggttaagagataaaaacatcaaaaggtttgcttccattttccccaatttgcagctgcttgatttga 98  Q
    |||||||| ||| ||||||||| || ||||||||||||||| |||||||||||||||||||||||||    
T  19468331 tggttaagcgatgaaaacatcataatgtttgcttccatttttcccaatttgcagctgcttgatttga 19468397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 206 - 304
Target Start/End: Original strand, 19468505 - 19468603
Alignment:
Q  206 aactttgaacttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggacttttg 304  Q
    ||||||| | |||||||||||||||||||||| |||||| |||||   |||   ||||||| ||| |||| |||||||||||| ||| |||||||||||    
T  19468505 aactttgtagttcccaagctggaggtgttgaagttgtcagatacaaaggttgatgatgaaacactttatgtgatctcaaagaactgttgtggacttttg 19468603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 177
Target Start/End: Complemental strand, 7554687 - 7554544
Alignment:
Q  34 gttaagagataaaaacatcaaaaggtttgcttccattttccccaatttgcagctgcttgatttgagccgatgttgtaacataactaatgaaggtactttg 133  Q
    |||||||||| |||||||||||   || |||||||| || ||||||||  |||||||||||||||     || | | ||||| |||| ||||||| |||     
T  7554687 gttaagagatgaaaacatcaaagtcttagcttccatctttcccaatttagagctgcttgatttgaaaaattgctatgacatatctaaagaaggtattttt 7554588  T
Q  134 cacgctttaaggagatgtggtaacattagacatttgaacctatc 177  Q
    |||  |||||| ||||||  ||||||||||||||||||| ||||    
T  7554587 cacattttaagaagatgtcataacattagacatttgaacttatc 7554544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 304
Target Start/End: Complemental strand, 43634984 - 43634902
Alignment:
Q  222 agctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggacttttg 304  Q
    |||| |||| |||||||||||||||||||   |||  ||||| || ||| |||| || |||||||||||||||||||||||||    
T  43634984 agctagaggcgttgaacttgtcatatacaaaggttgacgatggaacactttatgtgacctcaaagaattgtcgtggacttttg 43634902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 100
Target Start/End: Original strand, 29658800 - 29658862
Alignment:
Q  38 agagataaaaacatcaaaaggtttgcttccattttccccaatttgcagctgcttgatttgagc 100  Q
    |||||| ||||||||| |  ||||||||||||||||||||| ||| |  ||||||||||||||    
T  29658800 agagatcaaaacatcatattgtttgcttccattttccccaacttggaagtgcttgatttgagc 29658862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 100
Target Start/End: Original strand, 29691335 - 29691377
Alignment:
Q  58 gtttgcttccattttccccaatttgcagctgcttgatttgagc 100  Q
    ||||||||||||||||||||| ||| || ||||||||||||||    
T  29691335 gtttgcttccattttccccaacttggaggtgcttgatttgagc 29691377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 100
Target Start/End: Original strand, 29718847 - 29718889
Alignment:
Q  58 gtttgcttccattttccccaatttgcagctgcttgatttgagc 100  Q
    ||||||||||||||||||||| ||| || ||||||||||||||    
T  29718847 gtttgcttccattttccccaacttggaggtgcttgatttgagc 29718889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 206 - 394
Target Start/End: Original strand, 45245091 - 45245279
Alignment:
Q  206 aactttgaacttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggacttttgc 305  Q
    ||||||||| |||| || || ||||||||||| |||||| | |||   |||   ||||||| |||| ||| ||||||||||| ||||||||| |||||||    
T  45245091 aactttgaagttccaaaacttgaggtgttgaatttgtcagagacaatggttgatgatgaaacactccatgtgatctcaaagagttgtcgtgggcttttgc 45245190  T
Q  306 aactgttactgcaatgctgtcataatgtcagagataagggagtgatgcatgtggtaggaaattgcctgcaactcaaagagatcaatttg 394  Q
    |||| ||| || ||   ||| || |||||| ||||||||||||||  |||||||||| |||||||   ||||| | |||||||||||||    
T  45245191 aactattattgaaaaaatgttatcatgtcacagataagggagtgaaacatgtggtagaaaattgcacacaacttacagagatcaatttg 45245279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 312
Target Start/End: Original strand, 1037691 - 1037776
Alignment:
Q  227 gaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggacttttgcaactgtt 312  Q
    |||||||| ||||||||| ||||| |||||   ||||||| |||||||  |||||||||||||||| |||| ||||| ||||||||    
T  1037691 gaggtgtttaacttgtcacatacatgtgttgatgatgaaacactctatatgatctcaaagaattgttgtgggcttttacaactgtt 1037776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 1037506 - 1037561
Alignment:
Q  45 aaaacatcaaaaggtttgcttccattttccccaatttgcagctgcttgatttgagc 100  Q
    ||||||||| |  |||||||||||||||||||||||||||  | ||||||||||||    
T  1037506 aaaacatcatattgtttgcttccattttccccaatttgcaatttcttgatttgagc 1037561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 216 - 362
Target Start/End: Original strand, 13470748 - 13470894
Alignment:
Q  216 ttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggacttttgcaactgttact 315  Q
    ||||||| ||||||||||||||||||||| |||||   |||   ||| ||| |||||||  |||||||||||||||| |||| ||||||||||| |||||    
T  13470748 ttcccaatctggaggtgttgaacttgtcaaatacaaaggttaatgataaaacactctatatgatctcaaagaattgttgtgggcttttgcaactattact 13470847  T
Q  316 gcaatgctgtcataatgtcagagataagggagtgatgcatgtggtag 362  Q
      ||   ||||||||||||| |||  |||||||||  ||||||||||    
T  13470848 tgaactttgtcataatgtcacagaagagggagtgaaacatgtggtag 13470894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 206 - 362
Target Start/End: Original strand, 51113787 - 51113943
Alignment:
Q  206 aactttgaacttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggacttttgc 305  Q
    |||||||||  |||||| |||||||||||  |||||||| |||||   |||   ||||||| |||||||| |||||| |||| |||| |||| |||||||    
T  51113787 aactttgaagctcccaaactggaggtgttagacttgtcaaatacaatggttgatgatgaaacactctatgtgatctcgaagagttgttgtgggcttttgc 51113886  T
Q  306 aactgttactgcaatgctgtcataatgtcagagataagggagtgatgcatgtggtag 362  Q
    ||||||||||| ||   ||| |  |||||| ||| |||||||||| |||||||||||    
T  51113887 aactgttactgaaaaattgttaccatgtcacagagaagggagtgaagcatgtggtag 51113943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 51764272 - 51764336
Alignment:
Q  32 tggttaagagataaaaacatcaaaaggtttgcttccattttccccaatttgcagctgcttgattt 96  Q
    |||||||| ||| ||| ||||| || |||||||||||||||||||||||||||||||||||||||    
T  51764272 tggttaagtgatgaaagcatcataatgtttgcttccattttccccaatttgcagctgcttgattt 51764336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 13470564 - 13470630
Alignment:
Q  32 tggttaagagataaaaacatcaaaaggtttgcttccattttccccaatttgcagctgcttgatttga 98  Q
    |||||||| ||| ||  ||||| || ||||||||||| |||||||||||||||||||||||||||||    
T  13470564 tggttaagtgatgaaggcatcataatgtttgcttccaatttccccaatttgcagctgcttgatttga 13470630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 206 - 360
Target Start/End: Original strand, 51764446 - 51764600
Alignment:
Q  206 aactttgaacttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggacttttgc 305  Q
    ||||||| | |||| ||||||||||||||  ||||||||| ||||   |||   ||| ||| |||||||| |||||||||||||||| | || |||||||    
T  51764446 aactttgcagttccgaagctggaggtgttagacttgtcatttacaaaagttgatgataaaacactctatgcgatctcaaagaattgttgcgggcttttgc 51764545  T
Q  306 aactgttactgcaatgctgtcataatgtcagagataagggagtgatgcatgtggt 360  Q
    |||| |||||| ||   ||| |||||||||  || ||||||||||  ||||||||    
T  51764546 aactattactggaacattgtgataatgtcaaggagaagggagtgaaacatgtggt 51764600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 307
Target Start/End: Original strand, 51120890 - 51121000
Alignment:
Q  197 catggattcaactttgaacttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtg 296  Q
    |||||| | ||||||||| ||| |||  |||||||||||||||||||  ||||| | |||   ||||||| ||| ||||  |||||||||| ||||||||    
T  51120890 catggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtg 51120989  T
Q  297 gacttttgcaa 307  Q
    | |||||||||    
T  51120990 ggcttttgcaa 51121000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 51113613 - 51113677
Alignment:
Q  32 tggttaagagataaaaacatcaaaaggtttgcttccattttccccaatttgcagctgcttgattt 96  Q
    |||||||||||| | | ||||| || | |||||||||||||||||||| ||||||| ||||||||    
T  51113613 tggttaagagatgagagcatcataatgattgcttccattttccccaatctgcagcttcttgattt 51113677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 100
Target Start/End: Original strand, 514560 - 514625
Alignment:
Q  35 ttaagagataaaaacatcaaaaggtttgcttccattttccccaatttgcagctgcttgatttgagc 100  Q
    ||||||||| ||||| | | || ||||||||| |||||||| |||||||||||  |||||||||||    
T  514560 ttaagagatgaaaaccttataatgtttgcttcaattttcccgaatttgcagctaattgatttgagc 514625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 1657344 - 1657300
Alignment:
Q  206 aactttgaacttcccaagctggaggtgttgaacttgtcatataca 250  Q
    ||||||||| ||||||| |||||||||||| ||||||||| ||||    
T  1657344 aactttgaagttcccaaactggaggtgttggacttgtcatttaca 1657300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 48 - 177
Target Start/End: Original strand, 41901383 - 41901512
Alignment:
Q  48 acatcaaaaggtttgcttccattttccccaatttgcagctgcttgatttgagccgatgttgtaacataactaatgaaggtactttgcacgctttaaggag 147  Q
    |||||| || ||| |||||||||||||||||||||||||||||||||||||||   ||||||  ||||  | | ||||||| | | || | ||||||||     
T  41901383 acatcacaatgttcgcttccattttccccaatttgcagctgcttgatttgagcaattgttgtcgcatatttgaagaaggtattgttcaagttttaaggat 41901482  T
Q  148 atgtggtaacattagacatttgaacctatc 177  Q
     ||| |||||||||||||||||||| ||||    
T  41901483 gtgttgtaacattagacatttgaacttatc 41901512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 207 - 362
Target Start/End: Original strand, 41901542 - 41901697
Alignment:
Q  207 actttgaacttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggacttttgca 306  Q
    |||||||| ||||||| |||||||||||||||||||||||||||   |||   ||||||  ||| |||  ||||||||||| |||| ||||||||||| |    
T  41901542 actttgaagttcccaaactggaggtgttgaacttgtcatatacaaaagttgatgatgaagcactttatatgatctcaaagagttgttgtggacttttgaa 41901641  T
Q  307 actgttactgcaatgctgtcataatgtcagagataagggagtgatgcatgtggtag 362  Q
    | ||| ||| |||   ||| || |||||| | | |||||||||| |||||||||||    
T  41901642 attgtcacttcaagattgtaatgatgtcacaaagaagggagtgaagcatgtggtag 41901697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 177
Target Start/End: Original strand, 41889399 - 41889528
Alignment:
Q  48 acatcaaaaggtttgcttccattttccccaatttgcagctgcttgatttgagccgatgttgtaacataactaatgaaggtactttgcacgctttaaggag 147  Q
    |||||| || |||||||||||||||||| ||||||||||| ||||||||||||   ||||||  ||||  | ||||||||| |   || | ||||||||     
T  41889399 acatcataatgtttgcttccattttccctaatttgcagctacttgatttgagcaattgttgtcgcatatttgatgaaggtattactcaagttttaaggat 41889498  T
Q  148 atgtggtaacattagacatttgaacctatc 177  Q
    |||| ||||||||||| |||||||| ||||    
T  41889499 atgttgtaacattagatatttgaacttatc 41889528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 177
Target Start/End: Complemental strand, 32267714 - 32267597
Alignment:
Q  60 ttgcttccattttccccaatttgcagctgcttgatttgagccgatgttgtaacataactaatgaaggtactttgcacgctttaaggagatgtggtaacat 159  Q
    |||||||||| ||| ||||||||||||||||||||||||||   ||||||  |||| || | |||||||   | ||   |||||||| |||| |||||||    
T  32267714 ttgcttccatcttctccaatttgcagctgcttgatttgagcaattgttgtcgcatatctgaagaaggtatcgttcaatttttaaggatatgttgtaacat 32267615  T
Q  160 tagacatttgaacctatc 177  Q
    ||||||||||||| ||||    
T  32267614 tagacatttgaacttatc 32267597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 360
Target Start/End: Original strand, 38267560 - 38267716
Alignment:
Q  204 tcaactttgaacttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggactttt 303  Q
    ||||||||||| ||||||| || ||||||||| ||||| || ||||| | |||   ||||| | ||||||||  ||||||||||  || ||||| |||||    
T  38267560 tcaactttgaagttcccaaccttgaggtgttggacttgacacatacaagagttgatgatgacacactctatgtaatctcaaagacgtgccgtgggctttt 38267659  T
Q  304 gcaactgttactgcaatgctgtcataatgtcagagataagggagtgatgcatgtggt 360  Q
    | ||||||  ||||||   |||   |||||||  || ||||||||||||||||||||    
T  38267660 gaaactgtcgctgcaactttgtacgaatgtcaccgagaagggagtgatgcatgtggt 38267716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 307
Target Start/End: Original strand, 20478098 - 20478189
Alignment:
Q  216 ttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggacttttgcaa 307  Q
    ||||| |||||||||||||||||||||||||||||  ||||   || |||| | | | || |||||||| ||||||| |||| |||||||||    
T  20478098 ttccccagctggaggtgttgaacttgtcatatacaaatgttgatgacgaaacattatctgtgatctcaaggaattgttgtgggcttttgcaa 20478189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 97
Target Start/End: Complemental strand, 28525278 - 28525213
Alignment:
Q  32 tggttaagagataaaaacatcaaaaggtttgcttccattttccccaatttgcagctgcttgatttg 97  Q
    |||||||| ||  |||| |||| |||||||||||||||||||| ||||||| || ||||| |||||    
T  28525278 tggttaagggacgaaaatatcataaggtttgcttccattttccacaatttggaggtgcttaatttg 28525213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 206 - 394
Target Start/End: Original strand, 1552773 - 1552964
Alignment:
Q  206 aactttgaacttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggacttttgc 305  Q
    ||||||||| ||||||| ||||| |||||||| |||||| |||||  | ||   ||||||| |||| ||| ||| ||||||||||||||||| |||||||    
T  1552773 aactttgaaattcccaaactggaagtgttgaatttgtcacatacaaatattaatgatgaaacactcaatgtgatatcaaagaattgtcgtgggcttttgc 1552872  T
Q  306 aactgttact---gcaatgctgtcataatgtcagagataagggagtgatgcatgtggtaggaaattgcctgcaactcaaagagatcaatttg 394  Q
    | ||||||||    |||||   | || ||||||  || |||||||||| |||||| | || ||||||| ||||||| | |||||||||||||    
T  1552873 agctgttactagaacaatgtaattattatgtcaccgagaagggagtgaagcatgtcggagaaaattgcttgcaactaagagagatcaatttg 1552964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 197 - 313
Target Start/End: Original strand, 1524483 - 1524599
Alignment:
Q  197 catggattcaactttgaacttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtg 296  Q
    |||||| | ||||||||| |||||||  ||||||||||||| ||||||  |||| |||||   ||||||| |||||||  ||||||| ||| ||||||||    
T  1524483 catggaatgaactttgaagttcccaatttggaggtgttgaatttgtcacgtacaagtgttgatgatgaaacactctatatgatctcacagagttgtcgtg 1524582  T
Q  297 gacttttgcaactgtta 313  Q
    | |||||||||||||||    
T  1524583 ggcttttgcaactgtta 1524599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 206 - 306
Target Start/End: Original strand, 1548430 - 1548530
Alignment:
Q  206 aactttgaacttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggacttttgc 305  Q
    ||||||||| ||||||| ||||||||||||||||||||| ||||| || ||   ||||||| |||| ||| ||||||||||| |||| |||| |||||||    
T  1548430 aactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgc 1548529  T
Q  306 a 306  Q
    |    
T  1548530 a 1548530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 199 - 315
Target Start/End: Complemental strand, 570451 - 570335
Alignment:
Q  199 tggattcaactttgaacttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtgga 298  Q
    |||||| ||||||||| ||| ||| || |||||||||||||||||||||||||| |||    | |||  |||||||  ||| ||||||| |||||| ||     
T  570451 tggattgaactttgaagttctcaaactcgaggtgttgaacttgtcatatacaggagttgataacgaagaactctatctgatttcaaagagttgtcgcggg 570352  T
Q  299 cttttgcaactgttact 315  Q
    |||||||||||||||||    
T  570351 cttttgcaactgttact 570335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 206 - 394
Target Start/End: Original strand, 1489367 - 1489555
Alignment:
Q  206 aactttgaacttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggacttttgc 305  Q
    ||||||||| ||||||| || || |||||||||||||||||||||  ||||  | | |||| ||| | ||  ||||||| |  ||| ||||| |||||||    
T  1489367 aactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaacaacgaaacactgtgtgtaatctcaatgtgttgccgtgggcttttgc 1489466  T
Q  306 aactgttactgcaatgctgtcataatgtcagagataagggagtgatgcatgtggtaggaaattgcctgcaactcaaagagatcaatttg 394  Q
    |||| |||||| || | |||  |||||||| ||| |||||||||| ||||||| ||| ||| |||   ||||| | |||||||||||||    
T  1489467 aactcttactggaagggtgttttaatgtcacagagaagggagtgaagcatgtgctagaaaaatgcgcacaactaagagagatcaatttg 1489555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 8183858 - 8183926
Alignment:
Q  31 ttggttaagagataaaaacatcaaaaggtttgcttccattttccccaatttgcagctgcttgatttgag 99  Q
    |||||||| |||||||||| ||||||  ||||||||| | |||||||||||||||| ||||||||||||    
T  8183858 ttggttaacagataaaaacgtcaaaaaatttgcttccgtgttccccaatttgcagcggcttgatttgag 8183926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 227 - 306
Target Start/End: Original strand, 55505135 - 55505214
Alignment:
Q  227 gaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggacttttgca 306  Q
    ||||||||||||||||||||||||   |||  ||||| || ||| |||| || |||||||||||||||||||||||||||    
T  55505135 gaggtgttgaacttgtcatatacaaaggttgacgatggaacactttatgtgacctcaaagaattgtcgtggacttttgca 55505214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 225 - 362
Target Start/End: Complemental strand, 640989 - 640852
Alignment:
Q  225 tggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggacttttgcaactgttactgcaatgctg 324  Q
    |||||||||||||||||||| |||||   |||   ||||||| |||||| | || |||||||||||| ||||| |||||||| ||||||||| ||   ||    
T  640989 tggaggtgttgaacttgtcagatacaaacgttgatgatgaaacactctacgtgacctcaaagaattgccgtggtcttttgcatctgttactggaagattg 640890  T
Q  325 tcataatgtcagagataagggagtgatgcatgtggtag 362  Q
    |||| |||| | | | ||||||||||  ||||||||||    
T  640889 tcattatgtaacaaagaagggagtgaatcatgtggtag 640852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 312
Target Start/End: Original strand, 55908755 - 55908840
Alignment:
Q  227 gaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggacttttgcaactgtt 312  Q
    |||||||| ||||||||| ||||| |||||   ||||||| |||||||  |||||||||||||||| |||| ||||| ||||||||    
T  55908755 gaggtgtttaacttgtcacatacatgtgttgatgatgaaacactctatatgatctcaaagaattgttgtgggcttttacaactgtt 55908840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 96
Target Start/End: Complemental strand, 547179 - 547119
Alignment:
Q  36 taagagataaaaacatcaaaaggtttgcttccattttccccaatttgcagctgcttgattt 96  Q
    |||||||| ||| |||||||| |||| ||||||| |||||||||||||| |||||||||||    
T  547179 taagagatgaaagcatcaaaatgtttccttccatgttccccaatttgcaactgcttgattt 547119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 362
Target Start/End: Original strand, 1517574 - 1517658
Alignment:
Q  278 atctcaaagaattgtcgtggacttttgcaactgttactgcaatgctgtcataatgtcagagataagggagtgatgcatgtggtag 362  Q
    ||||||||||||||||||||| ||||| |||| |||||| ||   |||||| |||||| ||| |||||||| | |||||||||||    
T  1517574 atctcaaagaattgtcgtggaattttgaaactattactggaaaattgtcatgatgtcacagagaagggagttaggcatgtggtag 1517658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 172
Target Start/End: Complemental strand, 1600681 - 1600549
Alignment:
Q  40 agataaaaacatcaaaaggtttgcttccattttccccaatttgcagctgcttgatttgagccgatgttgtaacataactaatgaaggtactttgcacgct 139  Q
    ||||| ||| |||| || ||||||||||| ||| ||||||||||| ||||||||||||||| | ||   ||||||| || | ||||||| ||  || | |    
T  1600681 agatacaaagatcataatgtttgcttccaattttcccaatttgcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagtt 1600582  T
Q  140 ttaaggagatgtggtaacattagacatttgaac 172  Q
    |||||||||| |  ||| |||||||||||||||    
T  1600581 ttaaggagattttctaaaattagacatttgaac 1600549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 206 - 309
Target Start/End: Original strand, 1513413 - 1513516
Alignment:
Q  206 aactttgaacttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggacttttgc 305  Q
    ||||||||| ||||||| || || |||||||||||||||| ||||  ||||   ||||||| |||||| |  |||||||||  ||||||||| |||||||    
T  1513413 aactttgaagttcccaaactagaagtgttgaacttgtcatttacaaatgttgatgatgaaacactctacgtaatctcaaagtgttgtcgtgggcttttgc 1513512  T
Q  306 aact 309  Q
    ||||    
T  1513513 aact 1513516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 98
Target Start/End: Original strand, 1548258 - 1548321
Alignment:
Q  35 ttaagagataaaaacatcaaaaggtttgcttccattttccccaatttgcagctgcttgatttga 98  Q
    ||||||||| ||| ||||||||  ||| |||| ||||||||||||||||| |||||||||||||    
T  1548258 ttaagagatgaaaccatcaaaatattttcttcgattttccccaatttgcaactgcttgatttga 1548321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 206 - 361
Target Start/End: Original strand, 8187097 - 8187252
Alignment:
Q  206 aactttgaacttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggacttttgc 305  Q
    ||||||||| || |||| ||||||||||||||||||||| ||||| | |||   ||| ||| ||| ||||  || ||||||| |||| |||| |||||||    
T  8187097 aactttgaaatttccaaactggaggtgttgaacttgtcacatacaagagttgatgataaaacactttatgcaatttcaaagagttgttgtgggcttttgc 8187196  T
Q  306 aactgttactgcaatgctgtcataatgtcagagataagggagtgatgcatgtggta 361  Q
    |  |||||||| ||   |||| ||| |||| ||  |||||||||||| ||||||||    
T  8187197 agttgttactggaaaattgtcgtaacgtcacagggaagggagtgatggatgtggta 8187252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 12121294 - 12121353
Alignment:
Q  40 agataaaaacatcaaaaggtttgcttccattttccccaatttgcagctgcttgatttgag 99  Q
    |||| ||| |||||||||| |||||||| ||||||||||||||||  |||||||||||||    
T  12121294 agatgaaagcatcaaaaggattgcttccgttttccccaatttgcaattgcttgatttgag 12121353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 532282 - 532238
Alignment:
Q  206 aactttgaacttcccaagctggaggtgttgaacttgtcatataca 250  Q
    ||||||||| | |||||||| ||||||||||||||||||||||||    
T  532282 aactttgaagtccccaagctagaggtgttgaacttgtcatataca 532238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 362
Target Start/End: Original strand, 1495997 - 1496081
Alignment:
Q  278 atctcaaagaattgtcgtggacttttgcaactgttactgcaatgctgtcataatgtcagagataagggagtgatgcatgtggtag 362  Q
    ||||||||||||||||||||| |||||||||  |||||| ||   |||||| || ||| ||| |||||||| | |||||||||||    
T  1495997 atctcaaagaattgtcgtggaattttgcaacaattactggaaaattgtcatgatatcacagagaagggagttaggcatgtggtag 1496081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 362
Target Start/End: Original strand, 12121463 - 12121619
Alignment:
Q  206 aactttgaacttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggacttttgc 305  Q
    ||||||||| ||||||| || || |||||||||||||||||||||  ||||   ||||||| |||||  |  |||||||||  ||| ||||| |||||||    
T  12121463 aactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggcttttgc 12121562  T
Q  306 aactgttactgcaatgctgtcataatgtcagagataagggagtgatgcatgtggtag 362  Q
    |||| | |||| |||| ||   |  ||||| ||| | |||||||| |||||||||||    
T  12121563 aactctcactggaatggtgcttttttgtcacagagatgggagtgaagcatgtggtag 12121619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 21834236 - 21834276
Alignment:
Q  58 gtttgcttccattttccccaatttgcagctgcttgatttga 98  Q
    ||||||||| |||||||||||||| ||||||||||||||||    
T  21834236 gtttgcttcaattttccccaatttacagctgcttgatttga 21834276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 316
Target Start/End: Original strand, 1537764 - 1537883
Alignment:
Q  197 catggattcaactttgaacttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtg 296  Q
    |||||| | ||||||||| ||||||| || || |||||||||||||||||||||  ||||   ||  ||| ||| | ||  |||||||||  ||||||||    
T  1537764 catggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcgtg 1537863  T
Q  297 gacttttgcaactgttactg 316  Q
    | ||||||||||| ||||||    
T  1537864 ggcttttgcaacttttactg 1537883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 55908570 - 55908625
Alignment:
Q  45 aaaacatcaaaaggtttgcttccattttccccaatttgcagctgcttgatttgagc 100  Q
    ||||||||| |  |||||||||||||||||||||||||||  | ||||||||||||    
T  55908570 aaaacatcatattgtttgcttccattttccccaatttgcaatttcttgatttgagc 55908625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 316
Target Start/End: Complemental strand, 547006 - 546896
Alignment:
Q  206 aactttgaacttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggacttttgc 305  Q
    ||||||||| |||| ||  |||||||| |||||||||||  ||||  |||    ||||||| |||||||| ||||||||||| |||| |||| ||||||     
T  547006 aactttgaagttcctaaattggaggtggtgaacttgtcacgtacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttgg 546907  T
Q  306 aactgttactg 316  Q
    || ||||||||    
T  546906 aattgttactg 546896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 96
Target Start/End: Complemental strand, 570775 - 570737
Alignment:
Q  58 gtttgcttccattttccccaatttgcagctgcttgattt 96  Q
    ||||||||||||||||||||||||||| || ||||||||    
T  570775 gtttgcttccattttccccaatttgcaactacttgattt 570737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 3438421 - 3438462
Alignment:
Q  58 gtttgcttccattttccccaatttgcagctgcttgatttgag 99  Q
    |||| |||| ||||||||||||||||||||||||||| ||||    
T  3438421 gttttcttctattttccccaatttgcagctgcttgatgtgag 3438462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 53761596 - 53761649
Alignment:
Q  31 ttggttaagagataaaaacatcaaaaggtttgcttccattttccccaatttgca 84  Q
    ||||||||| ||| ||||||||| || |||||| || |||||||||||||||||    
T  53761596 ttggttaagtgatgaaaacatcataacgtttgcatcaattttccccaatttgca 53761649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 570615 - 570551
Alignment:
Q  32 tggttaagagataaaaacatcaaaaggtttgcttccattttccccaatttgcagctgcttgattt 96  Q
    |||||||| ||| |||||||   || ||||||||| |||||||||||||||||| | ||||||||    
T  570615 tggttaagtgatgaaaacattttaatgtttgcttctattttccccaatttgcagatacttgattt 570551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 641183 - 641115
Alignment:
Q  31 ttggttaagagataaaaacatcaaaaggtttgcttccattttccccaatttgcagctgcttgatttgag 99  Q
    |||| |||||||| ||||||| | || |||||||||||| ||||| ||||| | | |||||||||||||    
T  641183 ttggctaagagatgaaaacataataatgtttgcttccatgttcccaaatttacggttgcttgatttgag 641115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 1519148 - 1519192
Alignment:
Q  206 aactttgaacttcccaagctggaggtgttgaacttgtcatataca 250  Q
    ||||||||| ||||||| || |||||||||||||||||| |||||    
T  1519148 aactttgaagttcccaaactagaggtgttgaacttgtcacataca 1519192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 1600512 - 1600468
Alignment:
Q  206 aactttgaacttcccaagctggaggtgttgaacttgtcatataca 250  Q
    ||||||||| |||  || |||||||||||||||||||||||||||    
T  1600512 aactttgaagttcttaaactggaggtgttgaacttgtcatataca 1600468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 3438629 - 3438681
Alignment:
Q  264 aaatactctatgagatctcaaagaattgtcgtggacttttgcaactgttactg 316  Q
    |||||||| |||  |||||||||| |||| |||| ||||||||||||||||||    
T  3438629 aaatactccatgtaatctcaaagagttgttgtgggcttttgcaactgttactg 3438681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 7308118 - 7308086
Alignment:
Q  71 ttccccaatttgcagctgcttgatttgagccga 103  Q
    |||||||||||||||| ||||||||||||||||    
T  7308118 ttccccaatttgcagcggcttgatttgagccga 7308086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 21834382 - 21834422
Alignment:
Q  204 tcaactttgaacttcccaagctggaggtgttgaacttgtca 244  Q
    ||||||||| | |||||||||||||||||||| ||||||||    
T  21834382 tcaactttgtagttcccaagctggaggtgttggacttgtca 21834422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 17627901 - 17627952
Alignment:
Q  45 aaaacatcaaaaggtttgcttccattttccccaatttgcagctgcttgattt 96  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  17627901 aaaacatcaaaatgtttgcttccattttccccaatttgcaactgcttgattt 17627952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 206 - 313
Target Start/End: Original strand, 18315279 - 18315386
Alignment:
Q  206 aactttgaacttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggacttttgc 305  Q
    |||||| || ||||||| ||||||||||||||||||||| |||||   |||   ||||||  |||||||| ||||||||||| ||||||| | |||||||    
T  18315279 aactttaaagttcccaaactggaggtgttgaacttgtcacatacaaaagttgatgatgaagcactctatgtgatctcaaagagttgtcgtaggcttttgc 18315378  T
Q  306 aactgtta 313  Q
    ||||||||    
T  18315379 aactgtta 18315386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 18315102 - 18315170
Alignment:
Q  32 tggttaagagataaaaacatcaaaaggtttgcttccattttccccaatttgcagctgcttgatttgagc 100  Q
    |||||||||||  ||| ||||||||  ||| ||||||||||||||||||||||| ||||||||||||||    
T  18315102 tggttaagagaggaaagcatcaaaatattttcttccattttccccaatttgcagttgcttgatttgagc 18315170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 32151553 - 32151501
Alignment:
Q  47 aacatcaaaaggtttgcttccattttccccaatttgcagctgcttgatttgag 99  Q
    |||||||||| |||||||||||||||||| |||||||| ||||||||||||||    
T  32151553 aacatcaaaatgtttgcttccattttccctaatttgcaactgcttgatttgag 32151501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 313
Target Start/End: Complemental strand, 32151394 - 32151287
Alignment:
Q  206 aactttgaacttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggacttttgc 305  Q
    ||||| ||| || |||| ||||||||||| |||||||||| |||| |  ||   ||||||| |||||||| ||||||||||| |||| |||| |||||||    
T  32151394 aacttcgaagtttccaatctggaggtgttaaacttgtcatgtacaaggtttgatgatgaaacactctatgtgatctcaaagagttgtagtgggcttttgc 32151295  T
Q  306 aactgtta 313  Q
    ||||||||    
T  32151294 aactgtta 32151287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 21235651 - 21235605
Alignment:
Q  206 aactttgaacttcccaagctggaggtgttgaacttgtcatatacagg 252  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||    
T  21235651 aactttgaagttcccaaactggaggtgttgaacttgtcatatacagg 21235605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 206 - 307
Target Start/End: Original strand, 17636407 - 17636508
Alignment:
Q  206 aactttgaacttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggacttttgc 305  Q
    ||||||||| |||||||  |||||||||||||||||||| | ||||| |||  |||||||  | | |||| ||||||||||| ||||| | |||||||||    
T  17636407 aactttgaagttcccaaattggaggtgttgaacttgtcacaaacaggagttgacgatgaagcattgtatgtgatctcaaagagttgtcttagacttttgc 17636506  T
Q  306 aa 307  Q
    ||    
T  17636507 aa 17636508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 304
Target Start/End: Complemental strand, 27922601 - 27922503
Alignment:
Q  206 aactttgaacttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggacttttg 304  Q
    ||||||||| |||||||  ||||||||||||||||||||||||||  ||||   ||||||  ||| |||  ||||||||||| |||| |||| ||||||    
T  27922601 aactttgaagttcccaaattggaggtgttgaacttgtcatatacaaatgttgatgatgaagcactttatatgatctcaaagagttgttgtgggcttttg 27922503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 315
Target Start/End: Original strand, 34936190 - 34936278
Alignment:
Q  227 gaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggacttttgcaactgttact 315  Q
    ||||||||| |||||||||||||| | |||   ||| ||| ||||||||  ||| |||||| ||||||||| ||||||||||| |||||    
T  34936190 gaggtgttggacttgtcatatacaagagttgatgataaaacactctatgccatcgcaaagagttgtcgtgggcttttgcaactattact 34936278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 96
Target Start/End: Original strand, 17636260 - 17636290
Alignment:
Q  66 ccattttccccaatttgcagctgcttgattt 96  Q
    |||||||||||||||||||||||||||||||    
T  17636260 ccattttccccaatttgcagctgcttgattt 17636290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 28246301 - 28246345
Alignment:
Q  206 aactttgaacttcccaagctggaggtgttgaacttgtcatataca 250  Q
    ||||||||| ||||||| |||||||||||| ||||||||| ||||    
T  28246301 aactttgaagttcccaaactggaggtgttggacttgtcatttaca 28246345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 197 - 315
Target Start/End: Original strand, 15092148 - 15092266
Alignment:
Q  197 catggattcaactttgaacttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtg 296  Q
    |||||| | ||||||| | ||||| |||||||||||||||| |||||| | |||   |||   ||| ||| |||||||| |||||||||||||||| |||    
T  15092148 catggaatgaactttgcagttcccgagctggaggtgttgaatttgtcagaaacaaaggttaatgataaaacactctatgcgatctcaaagaattgttgtg 15092247  T
Q  297 gacttttgcaactgttact 315  Q
    | ||||||||||| |||||    
T  15092248 ggcttttgcaactattact 15092266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 10614834 - 10614794
Alignment:
Q  58 gtttgcttccattttccccaatttgcagctgcttgatttga 98  Q
    ||||||||||| ||||||||||||||| |||||||||||||    
T  10614834 gtttgcttccaatttccccaatttgcaactgcttgatttga 10614794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 7977741 - 7977705
Alignment:
Q  139 tttaaggagatgtggtaacattagacatttgaaccta 175  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  7977741 tttaaggagatgttgtaacattagacatttaaaccta 7977705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 709 - 644
Alignment:
Q  34 gttaagagataaaaacatcaaaaggtttgcttccattttccccaatttgcagctgcttgatttgag 99  Q
    ||||| ||||||||||||||||| |||||||||  | ||||| ||||||||||| |||||||||||    
T  709 gttaaaagataaaaacatcaaaatgtttgcttcagtattcccaaatttgcagctacttgatttgag 644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 316
Target Start/End: Original strand, 651 - 740
Alignment:
Q  227 gaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggacttttgcaactgttactg 316  Q
    |||||||| ||||||||| ||||| ||||    ||||||| |||||||  |||||| ||||||||| |||| || || ||||||||||||    
T  651 gaggtgtttaacttgtcacatacaagtgtcgatgatgaaacactctatatgatctcgaagaattgttgtgggctattacaactgttactg 740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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