View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20687_high_3 (Length: 378)
Name: NF20687_high_3
Description: NF20687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20687_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 35316473 - 35316653
Alignment:
| Q |
15 |
aatgaggtcgcttatgcgctattagggacagggacggagccnnnnnnn-ttatgaaaggtggcgaaaattgtagagtaattctattatgataagaggtat |
113 |
Q |
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| T |
35316473 |
aatgaggtcgcttatgcgctattagggacagggacggagccagaaaaaattatgaagggtggggaaaattgtagagtaattctattatgataagaggtat |
35316572 |
T |
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| Q |
114 |
agtgcattgcggcatatggaagcaaactcagaatctcatgttatatagtgtcatacggcttttatttgtcaatgagttgtg |
194 |
Q |
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| T |
35316573 |
agtgcattgcggcatatggaagcaaactcgtaatctcatgttatgtagtgtcatacggcttttatttgtcaatgagttgtg |
35316653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 270 - 378
Target Start/End: Original strand, 35316729 - 35316835
Alignment:
| Q |
270 |
cttaaataaactttgatccttctgttttacctcaaatgaaattttagtccctctatttcttaatatgtgtttttaattccacaccttattgcaattttgg |
369 |
Q |
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| T |
35316729 |
cttaaataaactttgatctttctgttttacctcaaatgaaattttagtccctatatttctta--atgtgtttttagttccacaccttattgcaattttgg |
35316826 |
T |
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| Q |
370 |
tttcaatcc |
378 |
Q |
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| T |
35316827 |
tttcaatcc |
35316835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 63 - 194
Target Start/End: Complemental strand, 30862582 - 30862451
Alignment:
| Q |
63 |
ttatgaaaggtggcgaaaattgtagagtaattctattatgataagaggtatagtgcattgcggcatatggaagcaaactcagaatctcatgttatatagt |
162 |
Q |
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| T |
30862582 |
ttatgaagggtggcaaaaattgtagagtaattctattataatacgaggtatagtgcattacggcggatgaaaacaaactcctaatctgatgttatgtagt |
30862483 |
T |
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| Q |
163 |
gtcatacggcttttatttgtcaatgagttgtg |
194 |
Q |
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| T |
30862482 |
gttatatgacttttatttgtcaatgagttgtg |
30862451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 270 - 378
Target Start/End: Complemental strand, 30862375 - 30862276
Alignment:
| Q |
270 |
cttaaataaactttga-tccttctgttttacctcaaatgaaattttagtccctctatttcttaatatgtgtttttaattccacaccttattgcaattttg |
368 |
Q |
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| T |
30862375 |
cttaaataaacttttaatccccctgttttacctcaaatgaaattttagtccctc----------tatgtgtttttagttccacacattattgaaattttg |
30862286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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