View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20687_high_5 (Length: 306)

Name: NF20687_high_5
Description: NF20687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20687_high_5
NF20687_high_5
[»] chr2 (4 HSPs)
chr2 (74-150)||(19506552-19506629)
chr2 (206-283)||(19506960-19507038)
chr2 (209-282)||(36342119-36342193)
chr2 (69-98)||(2218609-2218638)
[»] chr5 (3 HSPs)
chr5 (209-281)||(20159913-20159986)
chr5 (209-283)||(6374477-6374552)
chr5 (69-145)||(23421411-23421487)
[»] chr3 (4 HSPs)
chr3 (209-281)||(49436242-49436315)
chr3 (210-282)||(27209436-27209509)
chr3 (209-282)||(30530973-30531047)
chr3 (209-267)||(30540614-30540672)
[»] chr6 (2 HSPs)
chr6 (209-283)||(2289264-2289339)
chr6 (69-146)||(7433396-7433473)
[»] chr4 (2 HSPs)
chr4 (209-282)||(5317867-5317941)
chr4 (209-265)||(54254051-54254107)
[»] chr8 (4 HSPs)
chr8 (209-265)||(27675686-27675742)
chr8 (69-119)||(3668740-3668790)
chr8 (209-256)||(15893337-15893384)
chr8 (229-281)||(29671007-29671060)
[»] chr1 (1 HSPs)
chr1 (213-256)||(40091847-40091890)
[»] chr7 (2 HSPs)
chr7 (209-283)||(12869151-12869226)
chr7 (209-256)||(26152099-26152146)


Alignment Details
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 74 - 150
Target Start/End: Original strand, 19506552 - 19506629
Alignment:
Q  74 ggttgtatttatagccttcaatgagtccgagttttggttacttaa-gctgcaagtaacaagggtattttggtatatta 150  Q
    ||||||||||||||||||  ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  19506552 ggttgtatttatagccttttatgagcccgagttttggttacttaaagctgcaagtaacaagggtattttggtatatta 19506629  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 206 - 283
Target Start/End: Original strand, 19506960 - 19507038
Alignment:
Q  206 ctaatacttgttattccataaacttttatgaagtgaaacatgtctgaagatatacaagtt-aagttgaagctcatgtct 283  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||||  | ||||| ||||||||||||||||||    
T  19506960 ctaataatttttattccataaacttttatgaagtgaaacatgtctgaagatgcataagttgaagttgaagctcatgtct 19507038  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 209 - 282
Target Start/End: Original strand, 36342119 - 36342193
Alignment:
Q  209 atacttgttattccataaacttttatgaagtgaaacatgtctgaagatatacaagtt-aagttgaagctcatgtc 282  Q
    |||||||||||| ||||||||| | |||||||||||||||||||||||  ||| ||| ||||||||| |||||||    
T  36342119 atacttgttattacataaacttctgtgaagtgaaacatgtctgaagatgcacatgttgaagttgaaggtcatgtc 36342193  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 98
Target Start/End: Original strand, 2218609 - 2218638
Alignment:
Q  69 tcaagggttgtatttatagccttcaatgag 98  Q
    ||||||||||||||||||||||||||||||    
T  2218609 tcaagggttgtatttatagccttcaatgag 2218638  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 209 - 281
Target Start/End: Complemental strand, 20159986 - 20159913
Alignment:
Q  209 atacttgttattccataaacttttatgaagtgaaacatgtctgaagatatacaagtt-aagttgaagctcatgt 281  Q
    |||||||||||||||||||||||| || ||| ||||||||||||||||  ||||||| ||||||||||||||||    
T  20159986 atacttgttattccataaacttttgtgtagttaaacatgtctgaagatgcacaagttgaagttgaagctcatgt 20159913  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 283
Target Start/End: Original strand, 6374477 - 6374552
Alignment:
Q  209 atacttgttattccataaacttttatgaagtgaaacatgtctgaagatatacaagtt-aagttgaagctcatgtct 283  Q
    |||||||||||| ||| |  |||| ||||||||||||||||| |||||  |||||||  |||||||||||||||||    
T  6374477 atacttgttatttcattatattttttgaagtgaaacatgtctcaagatgcacaagttccagttgaagctcatgtct 6374552  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 145
Target Start/End: Complemental strand, 23421487 - 23421411
Alignment:
Q  69 tcaagggttgtatttatagccttcaatgagtccgagttttggttacttaagctgcaagtaacaagggtattttggta 145  Q
    |||||||||||||||| |||| || ||| | | || || |||||||||| || ||||||||||||| ||||| ||||    
T  23421487 tcaagggttgtatttacagccctctatgggcctgatttgtggttacttaggcagcaagtaacaaggatatttaggta 23421411  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 209 - 281
Target Start/End: Complemental strand, 49436315 - 49436242
Alignment:
Q  209 atacttgttattccataaacttttatgaagtgaaacatgtctgaagatatacaagtt-aagttgaagctcatgt 281  Q
    ||||||||||||||| |||||||| ||||||||||||||||| |||||  ||||||| ||||||||||||||||    
T  49436315 atacttgttattccaaaaacttttgtgaagtgaaacatgtctaaagatgcacaagttaaagttgaagctcatgt 49436242  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 282
Target Start/End: Original strand, 27209436 - 27209509
Alignment:
Q  210 tacttgttattccataaacttttatgaagtgaaacatgtctgaagatatacaagtt-aagttgaagctcatgtc 282  Q
    ||||||| ||||||||||||||| |||| | ||| ||||||||||||  ||||||| ||||||||| |||||||    
T  27209436 tacttgtcattccataaacttttgtgaaataaaatatgtctgaagatgcacaagttgaagttgaagttcatgtc 27209509  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 282
Target Start/End: Original strand, 30530973 - 30531047
Alignment:
Q  209 atacttgttattccataaacttttatgaagtgaaacatgtctgaagatatacaagtt-aagttgaagctcatgtc 282  Q
    |||||||||||||||| |  |||| ||||||||||||| | |||||||  ||||||| ||||| |||||||||||    
T  30530973 atacttgttattccattatattttgtgaagtgaaacatttttgaagatgcacaagttcaagttaaagctcatgtc 30531047  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 267
Target Start/End: Complemental strand, 30540672 - 30540614
Alignment:
Q  209 atacttgttattccataaacttttatgaagtgaaacatgtctgaagatatacaagttaa 267  Q
    ||||||||||| |||||||  ||| ||||||||||||||| |||||||  |||||||||    
T  30540672 atacttgttatcccataaaactttgtgaagtgaaacatgtgtgaagatgcacaagttaa 30540614  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 209 - 283
Target Start/End: Complemental strand, 2289339 - 2289264
Alignment:
Q  209 atacttgttattccataaacttttatgaagtgaaacatgtctgaagatatacaagtt-aagttgaagctcatgtct 283  Q
    |||||||||||||| ||||||||| ||||||||||||| |||||||||  ||||||| ||||||||| ||||||||    
T  2289339 atacttgttattccttaaacttttgtgaagtgaaacatatctgaagatgcacaagttgaagttgaagatcatgtct 2289264  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 7433473 - 7433396
Alignment:
Q  69 tcaagggttgtatttatagccttcaatgagtccgagttttggttacttaagctgcaagtaacaagggtattttggtat 146  Q
    ||||||||||||||||||| | || |||||   || || |||||||||| || |||||||||| |||||||| |||||    
T  7433473 tcaagggttgtatttatagtcctccatgagcttgatttgtggttacttaggcagcaagtaacaggggtatttaggtat 7433396  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 209 - 282
Target Start/End: Original strand, 5317867 - 5317941
Alignment:
Q  209 atacttgttattccataaacttttatgaagtgaaacatgtctgaagatatacaagtt-aagttgaagctcatgtc 282  Q
    |||||||||||||||||||||||| |||| |||||||||||| |||||  | ||||| | |||||||||||||||    
T  5317867 atacttgttattccataaacttttgtgaaatgaaacatgtctcaagatgcagaagttgacgttgaagctcatgtc 5317941  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 54254051 - 54254107
Alignment:
Q  209 atacttgttattccataaacttttatgaagtgaaacatgtctgaagatatacaagtt 265  Q
    |||||||||||||||||||||||| |||||| |||| |||||||||||  |||||||    
T  54254051 atacttgttattccataaacttttgtgaagtaaaacttgtctgaagatgcacaagtt 54254107  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 209 - 265
Target Start/End: Complemental strand, 27675742 - 27675686
Alignment:
Q  209 atacttgttattccataaacttttatgaagtgaaacatgtctgaagatatacaagtt 265  Q
    ||||||||||||||||||| |||| ||||||||||||||| |||||||  |||||||    
T  27675742 atacttgttattccataaaattttgtgaagtgaaacatgtttgaagatgcacaagtt 27675686  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 3668740 - 3668790
Alignment:
Q  69 tcaagggttgtatttatagccttcaatgagtccgagttttggttacttaag 119  Q
    |||||||||||||||||||||||| ||||| | || |||||||||||||||    
T  3668740 tcaagggttgtatttatagccttctatgagcctgatttttggttacttaag 3668790  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 256
Target Start/End: Complemental strand, 15893384 - 15893337
Alignment:
Q  209 atacttgttattccataaacttttatgaagtgaaacatgtctgaagat 256  Q
    |||||| ||||||||| || |||| |||||||||||||||||||||||    
T  15893384 atacttattattccattaaattttgtgaagtgaaacatgtctgaagat 15893337  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 281
Target Start/End: Original strand, 29671007 - 29671060
Alignment:
Q  229 ttttatgaagtgaaacatgtctgaagatatacaagtt-aagttgaagctcatgt 281  Q
    |||| ||||||||||||||| |||||||  ||||||| ||||||||||||||||    
T  29671007 ttttgtgaagtgaaacatgtttgaagatgcacaagttgaagttgaagctcatgt 29671060  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 256
Target Start/End: Original strand, 40091847 - 40091890
Alignment:
Q  213 ttgttattccataaacttttatgaagtgaaacatgtctgaagat 256  Q
    |||||||||||| ||||||| |||||||||||||||||||||||    
T  40091847 ttgttattccatcaacttttgtgaagtgaaacatgtctgaagat 40091890  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 283
Target Start/End: Original strand, 12869151 - 12869226
Alignment:
Q  209 atacttgttattccataaacttttatgaagtgaaacatgtctgaagatatacaagtt-aagttgaagctcatgtct 283  Q
    |||||||| ||||||| |  |||| |||||||||||||||||||||||  ||| |||  |||||||||||||||||    
T  12869151 atacttgtcattccattatattttgtgaagtgaaacatgtctgaagatgcacatgttccagttgaagctcatgtct 12869226  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 256
Target Start/End: Original strand, 26152099 - 26152146
Alignment:
Q  209 atacttgttattccataaacttttatgaagtgaaacatgtctgaagat 256  Q
    |||||||||||||||| |  |||| |||||||||||||||||||||||    
T  26152099 atacttgttattccattatattttgtgaagtgaaacatgtctgaagat 26152146  T

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