View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20687_high_7 (Length: 292)
Name: NF20687_high_7
Description: NF20687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20687_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 2623998 - 2623715
Alignment:
| Q |
1 |
gtaaatggtttatcagaggattttactctggaaacctggtatgtccattgttgttggttagtgaatctatagggtctgtttggctgtgacaacattggat |
100 |
Q |
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| T |
2623998 |
gtaaagggtttatcagaggatttttctctggaaacctggtatgtccattgttgttggttagtgaatctatagggtctgtttggctgtgacaacattggat |
2623899 |
T |
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| Q |
101 |
tagtaagtatgtgttgttagtcttagaataattggaattagtgtttggtttgattttaagatgtttttgttgagatactgagagtggtagtgatgttatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2623898 |
tagtaagtatgtgttgttagtcttagaataattggaattagtgtttggtttgattttaagatgtttttgttgagatactgagagtggtagtgatgttatg |
2623799 |
T |
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| Q |
201 |
gcaatgcccatgatatttttgaatggaattctactcagtcacatatttatttcttacc----cataagtcagaattcatggttc |
280 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2623798 |
gcaatgcccatgatatttttgaatgaaattctactcagtcacatatttatttcttacccatacataagtcagaattcatggttc |
2623715 |
T |
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