View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20687_low_1 (Length: 555)
Name: NF20687_low_1
Description: NF20687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20687_low_1 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 555
Target Start/End: Complemental strand, 13293119 - 13292558
Alignment:
| Q |
1 |
ccagatcgactctggagtgtcaaaagggtttggccttgcgaccactcaggttagaggttatttccaggttaaggcatatcaaacaatttcgatgtttatg |
100 |
Q |
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| T |
13293119 |
ccagatcgactctggagtgtcaaa-gggtttggccttgcgaccactcaggttagaggttatttccaggttaaggcatatcaaacaatttcgatgtttatg |
13293021 |
T |
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| Q |
101 |
ttaaagaagacaattttagtactgaaaatatatacaagtaaccagtgattcatattttcaannnnnnn------aacaagactaggctcttaattggaat |
194 |
Q |
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| T |
13293020 |
ttaaagaagacaattttagtactgaaaatatatacaagtaaccagtgattcatattattattatttttttttttaataagactaggctcttaattggaat |
13292921 |
T |
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| Q |
195 |
catatgaagttgttaaa-aactttagaatataggaattctactagtatatgaaagggtt-tgaagtccagacccattaagtaaattattcatatcatacc |
292 |
Q |
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| T |
13292920 |
catatgaagttcttaaacaactttagaatataggaattctactagtatatgaaagggttatgaagtccagacccattaagtaaattattcatatcatacc |
13292821 |
T |
|
| Q |
293 |
agtgttgtttgttactatgtaataaagtcaatattaaatggatttaacttaatgtttaaaacacaaacaatacgtcaacaatgcatgcatttggaacctc |
392 |
Q |
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| T |
13292820 |
agtgttgtttgttactatgtaacaaagtcaaaattaaatggatttaacttaatgtttaaaacacaaacaatacgtaaacaatgcatacatttggaacctc |
13292721 |
T |
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| Q |
393 |
aaattggaagatatcatgattttgttgagagaaattaaacaatattcaatatatgcacataactgacgaaaaagcagaagaaatgtaagttcaattccta |
492 |
Q |
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| T |
13292720 |
aaattggaagatatcatgattttgttgagagaaattaaacaatattcaatacatgcacatatctgacgaagaagcagaagaaacgtaaattcaattccta |
13292621 |
T |
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| Q |
493 |
caacactcgttctaagggtgaacccaaaggtgtttgagctacaccttgtcttctaggccgtat |
555 |
Q |
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| T |
13292620 |
caacactcgttctaagggtgaacccaaaggtgtttgagctacaccttatcttctaggccgtat |
13292558 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 536
Target Start/End: Complemental strand, 10057714 - 10057661
Alignment:
| Q |
483 |
tcaattcctacaacactcgttctaagggtgaacccaaaggtgtttgagctacac |
536 |
Q |
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| T |
10057714 |
tcaattcctataacactcgtttcaaaggtgaacccaaaggtggttgagcaacac |
10057661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 483 - 519
Target Start/End: Original strand, 38233439 - 38233475
Alignment:
| Q |
483 |
tcaattcctacaacactcgttctaagggtgaacccaa |
519 |
Q |
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| T |
38233439 |
tcaattcctacaacactcgttccaagggtgcacccaa |
38233475 |
T |
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