View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20687_low_11 (Length: 235)
Name: NF20687_low_11
Description: NF20687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20687_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 9857695 - 9857488
Alignment:
| Q |
18 |
acctccatttcctcttcatcttcaaattcatccaaaccattgttccattgatatcctcggtaatcatcttcaaaataaacttcataatctaattcttcat |
117 |
Q |
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| T |
9857695 |
acctccatttcctcttcatcttcaaattcatccaaaccattgttccattgatatcctcggtaatcatcttcaaaataaacttcataatctaattcttcat |
9857596 |
T |
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| Q |
118 |
aagtttcactttcaatagcacttgtaataggaagagccaacccattatcttcctccccaacctcaatttcctcttcatcctcttccaaacaaaggttctc |
217 |
Q |
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| T |
9857595 |
aagtttcactttcaatagcacttgtaataggaagagccaacccattatcttcctccccaacctcaatttcctctttatcctcttccaaacaaaggttctc |
9857496 |
T |
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| Q |
218 |
ttcttctc |
225 |
Q |
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||| |||| |
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| T |
9857495 |
ttcatctc |
9857488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 9857884 - 9857797
Alignment:
| Q |
18 |
acctccatttcctcttcatcttcaaattcatccaaaccattgttccattgatatcctcggtaatcatcttcaaaataaacttcataat |
105 |
Q |
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| T |
9857884 |
acctccatttcctcttcatcttcatattcttccaaaccaacgttccattgatatcctccgtaatcatcttcataattaacttcataat |
9857797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 9857753 - 9857712
Alignment:
| Q |
62 |
ccattgatatcctcggtaatcatcttcaaaataaacttcata |
103 |
Q |
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| T |
9857753 |
ccattgatatcctccgtaatcatcttcacaataaacttcata |
9857712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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