View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20687_low_2 (Length: 462)
Name: NF20687_low_2
Description: NF20687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20687_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 2 - 454
Target Start/End: Original strand, 13293096 - 13293547
Alignment:
| Q |
2 |
tttgacactccagagtcgatctggtgctaccaggttcacctttcgatggcgtcaaaacaatgttagccacccatggcgatagcgattagtccttagttga |
101 |
Q |
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| T |
13293096 |
tttgacactccagagtcgatctggtgctaccaggttcacctttcgatggcgtcaaaacaatgttagccacccatggcgatagcgattagtccttagttga |
13293195 |
T |
|
| Q |
102 |
gtgcattggaatacaataaatctttgatgccttatcagaagcaaaacacattaataatttgagttattattattcaatttgtatggtgcaggttatgagc |
201 |
Q |
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| T |
13293196 |
gtgcattggaatacaataaatctttgatgccttatcagaagcaaaacacattaataatttgagttattat-attcaatttgtatggtgcaggttatgagc |
13293294 |
T |
|
| Q |
202 |
ttgcaggcagagttaacctatgttcaagccactcttgcgacaatgcagcgcctcccaatatcgctagctccatctcttccaaaccctcaaagctcttcac |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||| ||||||||||||||||||||||||| |
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| T |
13293295 |
ttgcaggcagagttaacctatgttcaagccactcttgcgacaatgcagcgcctcccaatctcactcgctccatcgcttccaaaccctcaaagctcttcac |
13293394 |
T |
|
| Q |
302 |
caagttttcattcctcctcggatcacgtgggaacaaatgcagacatgcacagtgcctctaacatgtccatgcattttgatcctcatcagccactttcatc |
401 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13293395 |
caagttttcactcctcctcggatcacgtgggaacaaatgcagacatgcacagtgcctctaacatgtccatgcattttgatcctcatcagccactttcatc |
13293494 |
T |
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| Q |
402 |
attggacttgagcagcttcttcaatcaatcagatcaacaacttgatgatgatg |
454 |
Q |
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| T |
13293495 |
attggacttgagcagcttcttcaatcaatcagatcaacaacttgatgatgatg |
13293547 |
T |
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