View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20687_low_6 (Length: 301)

Name: NF20687_low_6
Description: NF20687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20687_low_6
NF20687_low_6
[»] chr1 (2 HSPs)
chr1 (106-195)||(6060147-6060236)
chr1 (10-72)||(6060085-6060147)
[»] chr8 (1 HSPs)
chr8 (24-224)||(14197430-14197631)
[»] chr4 (1 HSPs)
chr4 (40-289)||(52409487-52409736)
[»] chr3 (3 HSPs)
chr3 (110-270)||(7775998-7776158)
chr3 (109-194)||(15272719-15272804)
chr3 (109-194)||(40874221-40874306)
[»] chr5 (1 HSPs)
chr5 (124-214)||(23205007-23205097)
[»] chr6 (2 HSPs)
chr6 (109-194)||(11326051-11326136)
chr6 (109-194)||(13223891-13223976)


Alignment Details
Target: chr1 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 106 - 195
Target Start/End: Original strand, 6060147 - 6060236
Alignment:
Q  106 aatgctttttctagtcgggattgctggaatcatcttagaaatctcagaagaagaaatcttgatgtgggagatgctcaagctgtctttaaa 195  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6060147 aatgccttttctagtcgggattgctggaatcatcttagaaatctcagaagaagaaatcttgatgtgggagatgctcaagctgtctttaaa 6060236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 6060085 - 6060147
Alignment:
Q  10 aagaatatgactgcagcaactaaaagcctcgttgagaagtttgatgaagaaggagtacctaca 72  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6060085 aagaaaatgattgcagcaactaaaagcctcgttgagaagtttgatgaagaaggagtacctaca 6060147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 24 - 224
Target Start/End: Complemental strand, 14197631 - 14197430
Alignment:
Q  24 agcaactaaaagcctcgttgagaagtttgatgaagaaggagtacctacagggaaagttgctacaatgtttcagggtgaagataatgctttttctagtcgg 123  Q
    ||||||||| | |||  ||||||| ||||||||| ||||| ||| | ||||||||||||||||||||||||| |||| |||||||||||||||||||  |    
T  14197631 agcaactaataacctttttgagaa-tttgatgaa-aaggaatacatgcagggaaagttgctacaatgtttcatggtggagataatgctttttctagtgtg 14197534  T
Q  124 gattgctggaatcatcttagaaatctca----gaagaagaaatcttgatgtgggagatgctcaagctgtctttaaattttgcaagaaaaaacaagttgag 219  Q
    || ||||||||| |||||||| |||| |    |||||| | || |||| |||||| ||||||||||||||||||||||||| ||| ||||||||||||||    
T  14197533 gactgctggaat-atcttagacatcttaattagaagaaaacattttgacgtgggaaatgctcaagctgtctttaaattttgtaagcaaaaacaagttgag 14197435  T
Q  220 aatcc 224  Q
    |||||    
T  14197434 aatcc 14197430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 40 - 289
Target Start/End: Original strand, 52409487 - 52409736
Alignment:
Q  40 gttgagaagtttgatgaagaaggagtacctacagggaaagttgctacaatgtttcagggtgaagataatgctttttctagtcgggattgctggaatcatc 139  Q
    ||||||||||||||||| || ||| |||||||||| || ||||||| ||||||  |  ||| || ||   ||||||||||| | ||||| |||||||| |    
T  52409487 gttgagaagtttgatgaggagggaatacctacaggaaaggttgctaaaatgttcaatagtggaggtatgtctttttctagtagagattgttggaatcacc 52409586  T
Q  140 ttagaaatctcagaagaagaaatcttgatgtgggagatgctcaagctgtctttaaattttgcaagaaaaaacaagttgagaatcctaannnnnnnnatgc 239  Q
    ||||||||||  ||||||| |||||||   | ||||||||||||||||| || || ||||| |||| ||| |||| |||| |||| ||        |||     
T  52409587 ttagaaatcttcgaagaaggaatcttgtaattggagatgctcaagctgtattcaacttttgtaagacaaagcaagctgaggatccaaattttttttatga 52409686  T
Q  240 aatacaatgtgatgatgaagatagaatgatacatttcttctgggtggatg 289  Q
    ||||||||||||||||||||||||||||||| |||| || ||||||||||    
T  52409687 aatacaatgtgatgatgaagatagaatgataaattttttttgggtggatg 52409736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 110 - 270
Target Start/End: Complemental strand, 7776158 - 7775998
Alignment:
Q  110 ctttttctagtcgggattgctggaatcatcttagaaatctcagaagaagaaatcttgatgtgggagatgctcaagctgtctttaaattttgcaagaaaaa 209  Q
    ||||||||||| | ||||| |||||||| |||||||||||  ||||||| |||||||   | ||||||||||||| ||| || || ||||| |||| |||    
T  7776158 ctttttctagtagagattgttggaatcaccttagaaatcttcgaagaaggaatcttgtaattggagatgctcaagttgtattcaacttttgtaagacaaa 7776059  T
Q  210 acaagttgagaatcctaannnnnnnnatgcaatacaatgtgatgatgaagatagaatgata 270  Q
     |||| ||||||||| |         ||| |||||||||||||||||||||||||||||||    
T  7776058 gcaagctgagaatccaatttttttttatgaaatacaatgtgatgatgaagatagaatgata 7775998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 194
Target Start/End: Complemental strand, 15272804 - 15272719
Alignment:
Q  109 gctttttctagtcgggattgctggaatcatcttagaaatctcagaagaagaaatcttgatgtgggagatgctcaagctgtctttaa 194  Q
    ||||| |||| | ||||||| ||||||||| |||||| |||  |||||| |||| | || || ||||||||||||||||| |||||    
T  15272804 gctttctctaatagggattgttggaatcatgttagaagtcttcgaagaaaaaatttagacgttggagatgctcaagctgtttttaa 15272719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 194
Target Start/End: Original strand, 40874221 - 40874306
Alignment:
Q  109 gctttttctagtcgggattgctggaatcatcttagaaatctcagaagaagaaatcttgatgtgggagatgctcaagctgtctttaa 194  Q
    ||||| |||| | ||||||| ||||||||| |||||| |||  |||||| |||| | || || ||||||||||||||||| |||||    
T  40874221 gctttctctaatagggattgttggaatcatgttagaagtcttcgaagaaaaaatttagacgttggagatgctcaagctgtttttaa 40874306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 214
Target Start/End: Complemental strand, 23205097 - 23205007
Alignment:
Q  124 gattgctggaatcatcttagaaatctcagaagaagaaatcttgatgtgggagatgctcaagctgtctttaaattttgcaagaaaaaacaag 214  Q
    ||||| ||||||||||||||| ||||| ||   | |||||| ||||| |||||||||||||| || || || ||||| ||| |||||||||    
T  23205097 gattgttggaatcatcttagagatctccgatctaaaaatctggatgttggagatgctcaagcagtgttaaacttttgtaagcaaaaacaag 23205007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 194
Target Start/End: Original strand, 11326051 - 11326136
Alignment:
Q  109 gctttttctagtcgggattgctggaatcatcttagaaatctcagaagaagaaatcttgatgtgggagatgctcaagctgtctttaa 194  Q
    ||||| |||| | ||||||| ||||||||| |||||| |||  |||||| |||| | || || ||||||||||||||||| |||||    
T  11326051 gctttctctaatagggattgttggaatcatgttagaagtcttcgaagaaaaaatttagacgttggagatgctcaagctgtttttaa 11326136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 194
Target Start/End: Complemental strand, 13223976 - 13223891
Alignment:
Q  109 gctttttctagtcgggattgctggaatcatcttagaaatctcagaagaagaaatcttgatgtgggagatgctcaagctgtctttaa 194  Q
    ||||| |||| | ||||||| ||||||||| |||||| |||  |||||| |||| | || || ||||||||||||||||| |||||    
T  13223976 gctttctctaatagggattgttggaatcatgttagaagtcttcgaagaaaaaatttagacgttggagatgctcaagctgtttttaa 13223891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University