View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20687_low_8 (Length: 272)
Name: NF20687_low_8
Description: NF20687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20687_low_8 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 9 - 272
Target Start/End: Original strand, 19506201 - 19506453
Alignment:
| Q |
9 |
agcacagaaggacaaaaactgattgtaatctttatcgctttagcaattttgacagaaggatcaatcgaaaaataagagttaaaaaggtacgacctgatat |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||| |||||||||||||||||| |
|
|
| T |
19506201 |
agcacagaaggacaaaaactgattgtaatctttatcgctttagcaattttgacagaa----------aaataatagagttagaaaggtacgacctgatat |
19506290 |
T |
|
| Q |
109 |
cataatctcttcgaccatcgacgctcgggagatcagacgacaaggccgcggttgccattttcctcggcggcaatcaacaaagaaaaaaggccataacggg |
208 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
19506291 |
cataatctcttcgaccaccgacgctcgggagatcagacgacaaggccgcggttgtcattttcctcgacggc-atcaacaaagaaaaaaggccataacggg |
19506389 |
T |
|
| Q |
209 |
ggcgacgtggaggttgaaaagggtgtggcccgggttagttttaccggatctcacagacggcgtc |
272 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||||| || ||||||||||||| |
|
|
| T |
19506390 |
ggcgaagtggaggttgaaaagggtgtggcccgagttagttttaccgattcccacagacggcgtc |
19506453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 29 - 266
Target Start/End: Complemental strand, 20568667 - 20568430
Alignment:
| Q |
29 |
gattgtaatctttatcgctttagcaatttt--gacagaaggatcaatcgaaaaataa--gagttaaaaaggtacgacctgatatcataatctcttcgacc |
124 |
Q |
| |
|
|||||||||||||||| ||||| || ||| || ||| |||| ||| ||||||||| |||||| | |||||| |||||||||||||| |||||| ||| |
|
|
| T |
20568667 |
gattgtaatctttatccctttaacactttctcgatagagggattaattgaaaaataacagagttagataggtacaacctgatatcataacctcttcaacc |
20568568 |
T |
|
| Q |
125 |
atcgacgctcgggagatcagacgacaaggccgcggttgccattttcctcggcggcaatcaacaaagaaaaaaggccataacgggggcgacgtggaggttg |
224 |
Q |
| |
|
| | ||| ||||||||||| ||||||||||||| ||||||| ||| |||||||| ||| | |||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
20568567 |
accaacg-tcgggagatcatacgacaaggccgcctttgccatcttcttcggcggc-atcgaaaaagaaaaaaggccataa-gggggcgaagtggaggttg |
20568471 |
T |
|
| Q |
225 |
aaaagggtgtggcccgggttagttttaccggatctcacagac |
266 |
Q |
| |
|
|||||||||||||| || ||||||||||| | |||||||| |
|
|
| T |
20568470 |
-aaagggtgtggcccacgtaagttttaccggttatcacagac |
20568430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 33484755 - 33484795
Alignment:
| Q |
230 |
ggtgtggcccgggttagttttaccggatctcacagacggcg |
270 |
Q |
| |
|
|||||||||||||| ||||||||||| || ||||||||||| |
|
|
| T |
33484755 |
ggtgtggcccgggtcagttttaccggttcccacagacggcg |
33484795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University