View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20688_high_11 (Length: 429)
Name: NF20688_high_11
Description: NF20688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20688_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 11 - 408
Target Start/End: Complemental strand, 39984420 - 39984029
Alignment:
| Q |
11 |
cacagatgcttacgctacattgcacatgcttgatttaaagcgtgtttcatgtttacgctattggactcatgaagacttttttaccaaataatttcttgaa |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39984420 |
cacacatgcttacgctacattgcacatgcttgatttaaagcgtgcttcatgtttacgctattggactcatgaagacttttttactaaataatttcttgaa |
39984321 |
T |
|
| Q |
111 |
actcgtatattaaaatctttaaaagcttaaaatttctcttttgagtagataaaataataaatttttcaatgtcnnnnnnntaaataataatgccttagga |
210 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39984320 |
actcgtatattaaattctttaaaagcttaaaatttctcttttgagtagataaaataataaatttttcaatgtcaagaaaataaataataatgccttagga |
39984221 |
T |
|
| Q |
211 |
aaacatgttagcaagtcttttaaaaaatttggactaagcaagcataatcaactaaacgtattaacgacctatatatgtannnnnnnnnnnnnnnnngaga |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
39984220 |
aaacatgttagcaagtcttttaaaaaatttggactaagcaagcataatcaactaaacgtattaaccacctatatatgta------tttttatttttgaga |
39984127 |
T |
|
| Q |
311 |
aaaacctatatatgtattttagttgcatgaatggttgtctaacctctaatatggaaatttaatccatctcaatcaacaaccactctcgtcgtatatat |
408 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39984126 |
aaaacctatatatgtattttggttgcatgaatggttgtctaacctctaatatggaaatttaatccatctcaatcaacaaccactctcgtcgtatatat |
39984029 |
T |
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