View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20688_high_12 (Length: 424)
Name: NF20688_high_12
Description: NF20688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20688_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 3842566 - 3842146
Alignment:
| Q |
1 |
atgctaacaacccttctgtggtgcaaaggcatacaatagttaaatatttacattttattttggactacatggagtattgttttctgcattgcttcaaaat |
100 |
Q |
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| T |
3842566 |
atgctaacaacccttctgtggtgcaaaggcatacaatagttaaatatttac-ttttattttggactacatggagtattgttttctgcattgcttcaaaat |
3842468 |
T |
|
| Q |
101 |
cacatgggatttatttttaaatgtttaaactagtcgagataccctggctgggattgaattggatttgtggtgatgcctataactttattttggaaaaggt |
200 |
Q |
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| T |
3842467 |
cacatgggatttatttttaaatgtttaaactagtcgagataccctggctgggatagaattggatttgtggtgatgcctataacgttattttggaaaaggt |
3842368 |
T |
|
| Q |
201 |
aaacgcaatgaggaaaatgaatcnnnnnnnagagctggtaaaatgaatacctctcaatcccataaattacttcatttcatccatactaaaatgtctttaa |
300 |
Q |
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| T |
3842367 |
aaaagaaatgaggaaaatgaatctttttttagagctggtaaaatgaatacctctcaatcccataaattacttcatttcatccatactaaaatgtctttaa |
3842268 |
T |
|
| Q |
301 |
tacaagtaggaatataattatagttataacaaggacacctgttaggttctttagaaaaaagaggacacttgttagcatttttcgaagatatatctatact |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3842267 |
tacaagtaggaatataattatagttataacaaggacacctgttagcttctttagaaaaaagaggacacttgttagcatttttcgaagatatatctatact |
3842168 |
T |
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| Q |
401 |
atatgtaaagagaatacatatt |
422 |
Q |
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| T |
3842167 |
ataggtaaagagaatacatatt |
3842146 |
T |
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