View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20688_high_13 (Length: 404)
Name: NF20688_high_13
Description: NF20688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20688_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 83 - 396
Target Start/End: Complemental strand, 10292531 - 10292219
Alignment:
| Q |
83 |
aaggtgtattgtaggcctcgtcgatccatctaaatttatgagataggggatattttaaataaagtttttgttgtcttatttcatttcattttcatcatct |
182 |
Q |
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| T |
10292531 |
aaggtgtattgtaggcctcgtcgatccatctaaatttatgagataggggatattttaaataaagtttttgttgtcttatttcatttcatttccatcatct |
10292432 |
T |
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| Q |
183 |
tgtagtacaaaataataacattaagaactatgaaatcaagaagaaaaaatacaattattcggtgcaagaacaaaaactaaattgcagcaagtaaattatt |
282 |
Q |
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| T |
10292431 |
tgtagtacaaaataataacattaagaactatgaaatcaagaagaaaaaatacaattattcggtgcaagaacaaaaactaaattgcagcaagtaaattatt |
10292332 |
T |
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| Q |
283 |
ataagataacctctattgtaaagttcttttgctagaacaacaaggtcattcatcttagtagtagtatgtttcaaatcggtacgcaaaaacctttgcgaca |
382 |
Q |
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| T |
10292331 |
ataagataacctctattgtaaagttcttttgctagaacaac-aggtcattcatcttagtagtagtatgtttcaaatcggtacgcaaaaacctttgcgaca |
10292233 |
T |
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| Q |
383 |
cctaatattcttcg |
396 |
Q |
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| T |
10292232 |
cctaatattattcg |
10292219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 10292590 - 10292677
Alignment:
| Q |
2 |
atcttaatttgtagaataaataaggcaatataaatttttatttataatgtcccctatttcgtatattttggagaggtcaccaaggtgt |
89 |
Q |
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| T |
10292590 |
atcttaatttgtagaataaataaggcaatataaatttttatttataatgtcccctatctcgtatattttggagaggtcaccaaggtgt |
10292677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 122 - 291
Target Start/End: Complemental strand, 10259019 - 10258845
Alignment:
| Q |
122 |
gagataggggatattttaaataaag-tttttgttgtcttatttcatttcattttcatcatcttgtagtacaaaataataacattaagaactatgaaatca |
220 |
Q |
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| T |
10259019 |
gagataggggacattataaataaaactttttattgccatattttatttcattgccaccatcttgtagtgcaaaatagtaacttcaagaattatgaaatta |
10258920 |
T |
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| Q |
221 |
agaag---aaaaaata-caattattcggtgcaagaacaaaaactaaattgcagcaagtaaattattataagataa |
291 |
Q |
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|||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||| |
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| T |
10258919 |
ggaaggaaaaaaaataacaattattcggtgcaagcacaaaaactaaattgcagcaagtaaaatattttaagataa |
10258845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 10258977 - 10259043
Alignment:
| Q |
19 |
aaataaggcaatataaatttttatttataatgtcccctatttcgtatattttggagaggtcaccaag |
85 |
Q |
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| T |
10258977 |
aaatatggcaataaaaagttttatttataatgtcccctatctcgtatatgttggagagatcaccaag |
10259043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 1811454 - 1811502
Alignment:
| Q |
159 |
tatttcatttcattttcatcatcttgtagtacaaaataataacattaag |
207 |
Q |
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| T |
1811454 |
tatttcatttcattgtcatcatcttatagtacaaaatcataactttaag |
1811502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 157 - 301
Target Start/End: Complemental strand, 14319760 - 14319618
Alignment:
| Q |
157 |
cttatttcatttcattttcatcatcttgtagtacaaaataataacattaagaactatgaaatcaagaagaaaaaatacaattattcggtgcaagaacaaa |
256 |
Q |
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| T |
14319760 |
cttatatcatttcattttcaccatcttgtagtacaaaataataatttgaagaactatgaact-aggaagaaaaaa-acaattattcagtgcaagaacaaa |
14319663 |
T |
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| Q |
257 |
aactaaattgcagcaagtaaattattataagataacctctattgt |
301 |
Q |
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| T |
14319662 |
gactaaacttcagcaagtaaattattccaagataagcactattgt |
14319618 |
T |
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