View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20688_high_23 (Length: 311)

Name: NF20688_high_23
Description: NF20688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20688_high_23
NF20688_high_23
[»] chr1 (8 HSPs)
chr1 (3-296)||(9163961-9164254)
chr1 (7-296)||(9220300-9220589)
chr1 (29-296)||(9157872-9158139)
chr1 (22-296)||(9114323-9114597)
chr1 (42-269)||(9175842-9176069)
chr1 (42-256)||(9202871-9203085)
chr1 (123-197)||(1840311-1840385)
chr1 (133-197)||(1866244-1866308)


Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 3 - 296
Target Start/End: Original strand, 9163961 - 9164254
Alignment:
Q  3 caaaggaagcaccttatagggaaatatatccaaatgatcaacagtgaaattataaaatccatctttaacaacaaatgaataactacaccctaaagaatcc 102  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9163961 caaaggaagcatcttatagggaaatatatccaaatgatcaacagtgaaattataaaatccatctttaacaacaaatgaataactacaccctaaagaatcc 9164060  T
Q  103 gtggaattaggaaaatcaaaagcttgtacacttatattcctcatcataggtggaatatcaacttgacaacaaccaatacccgaacatgttccattttcga 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9164061 gtggaattaggaaaatcaaaagcttgtacacttatattcctcatcataggtggaatatcaacttgacaacaaccaatacccgaacatgttccattttcga 9164160  T
Q  203 ttcgatttcgattaccgttacatcttgttaagcaaccggttgaatatgtttcttgattgtaaatgctgttgagataaccataactatcacaacc 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9164161 ttcgatttcgattaccgttacatcttgttaagcaaccggttgaatatgtttcttgattgtaaatgctgttgagataaccataactatcacaacc 9164254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 7 - 296
Target Start/End: Original strand, 9220300 - 9220589
Alignment:
Q  7 ggaagcaccttatagggaaatatatccaaatgatcaacagtgaaattataaaatccatctttaacaacaaatgaataactacaccctaaagaatccgtgg 106  Q
    ||||||| |||||| |||||  |||||||||||  |||||| ||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||    
T  9220300 ggaagcatcttataaggaaaattatccaaatgagaaacagtaaaattataggatccatctttaacaacaaatgaataactacaccccaaagaatccgtgg 9220399  T
Q  107 aattaggaaaatcaaaagcttgtacacttatattcctcatcataggtggaatatcaacttgacaacaaccaatacccgaacatgttccattttcgattcg 206  Q
    |||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |    
T  9220400 aattaggaaaatcagaaacttgtacacttatattcctcatcatatgtggaatatcaacttgacaacaaccaatacccgaacatgttccgttttcaatttg 9220499  T
Q  207 atttcgattaccgttacatcttgttaagcaaccggttgaatatgtttcttgattgtaaatgctgttgagataaccataactatcacaacc 296  Q
    ||| |||||||| | |||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||| ||||| ||||||||    
T  9220500 attccgattaccataacatcttgttaagcaaccggttgaatatgtttcttcgttgtaaatactgttgagataaccgtaactgtcacaacc 9220589  T

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Target: chr1; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 29 - 296
Target Start/End: Original strand, 9157872 - 9158139
Alignment:
Q  29 tatccaaatgatcaacagtgaaattataaaatccatctttaacaacaaatgaataactacaccctaaagaatccgtggaattaggaaaatcaaaagcttg 128  Q
    |||||||||||  || ||  ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||     
T  9157872 tatccaaatgagaaatagaaaaattataaaacccatctttaacaacaaatgaataactacaccccaaagaatccgtggaattaggaaaatcagaagcttc 9157971  T
Q  129 tacacttatattcctcatcataggtggaatatcaacttgacaacaaccaatacccgaacatgttccattttcgattcgatttcgattaccgttacatctt 228  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||  ||||||||||| |||||||||    
T  9157972 tatacttatattcctcatcataggtggaatatcaacttgacaacaaccaatacccgaacatgttccgttttctattctgtttcgattaccattacatctt 9158071  T
Q  229 gttaagcaaccggttgaatatgtttcttgattgtaaatgctgttgagataaccataactatcacaacc 296  Q
    || | |||||||||||||||||||||||  ||||| |  |||||||||||||| ||||| ||||||||    
T  9158072 gtcaggcaaccggttgaatatgtttctttgttgtatacactgttgagataaccgtaactgtcacaacc 9158139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 22 - 296
Target Start/End: Complemental strand, 9114597 - 9114323
Alignment:
Q  22 ggaaatatatccaaatgatcaacagtgaaattataaaatccatctttaacaacaaatgaataactacaccctaaagaatccgtggaattaggaaaatcaa 121  Q
    |||||| | |||||||||  |||||  |||||||||  ||||| |||||||||||| ||||| ||||| |  ||||| ||  ||||||||  |||| |||    
T  9114597 ggaaatttgtccaaatgagaaacagaaaaattataagctccatttttaacaacaaaagaatatctacatctcaaagattcattggaattaaaaaaagcaa 9114498  T
Q  122 aagcttgtacacttatattcctcatcataggtggaatatcaacttgacaacaaccaatacccgaacatgttccattttcgattcgatttcgattaccgtt 221  Q
    |||||| || | |||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||  ||||||||||||||    
T  9114497 aagcttctatagttatattcctcatcttaggtggaatatcaacttcacaacaaccaataccagaacatgttccattttcaattctctttcgattaccgtt 9114398  T
Q  222 acatcttgttaagcaaccggttgaatatgtttcttgattgtaaatgctgttgagataaccataactatcacaacc 296  Q
    |||| |||||||||||||| | ||||||||||| |  | ||||||||||||||||  ||| ||||||||||||||    
T  9114397 acatattgttaagcaaccgatggaatatgtttccttgtcgtaaatgctgttgagaataccgtaactatcacaacc 9114323  T

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Target: chr1; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 42 - 269
Target Start/End: Original strand, 9175842 - 9176069
Alignment:
Q  42 aacagtgaaattataaaatccatctttaacaacaaatgaataactacaccctaaagaatccgtggaattaggaaaatcaaaagcttgtacacttatattc 141  Q
    ||||||||||||||||||||||| |||||||||||| ||||  ||||| || ||||| ||  |  |||   || ||| | ||||||||| | ||||||||    
T  9175842 aacagtgaaattataaaatccatttttaacaacaaacgaattgctacatcccaaagattcgtttaaatcgagataattagaagcttgtatagttatattc 9175941  T
Q  142 ctcatcataggtggaatatcaacttgacaacaaccaatacccgaacatgttccattttcgattcgatttcgattaccgttacatcttgttaagcaaccgg 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||  |||||| ||||||| ||| |||||||||| ||||    
T  9175942 ctcatcataggtggaatatcaacttgacaacaaccaatacccgaacatgctccgttttcaattctgtttcgagtaccgttgcatattgttaagcagccgg 9176041  T
Q  242 ttgaatatgtttcttgattgtaaatgct 269  Q
    |  ||||| ||||||  | |||||||||    
T  9176042 tgtaatatctttctttgtcgtaaatgct 9176069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 42 - 256
Target Start/End: Original strand, 9202871 - 9203085
Alignment:
Q  42 aacagtgaaattataaaatccatctttaacaacaaatgaataactacaccctaaagaatccgtggaattaggaaaatcaaaagcttgtacacttatattc 141  Q
    ||||| ||||||||||||||||| |||||||||||| ||||  ||||| || ||||| ||  |  |||   || ||| | ||| ||||| | ||||||||    
T  9202871 aacagagaaattataaaatccatttttaacaacaaacgaattgctacatcccaaagattcgtttaaatcgagataattagaagattgtatagttatattc 9202970  T
Q  142 ctcatcataggtggaatatcaacttgacaacaaccaatacccgaacatgttccattttcgattcgatttcgattaccgttacatcttgttaagcaaccgg 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||  |||||| ||||||  ||| |||||||||||||||    
T  9202971 ctcatcataggtggaatatcaacttgacaacaaccaatacccgaacatgctccgttttcgattctgtttcgagtaccgtcgcatattgttaagcaaccgg 9203070  T
Q  242 ttgaatatgtttctt 256  Q
    |  || |||||||||    
T  9203071 tgtaaaatgtttctt 9203085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 123 - 197
Target Start/End: Complemental strand, 1840385 - 1840311
Alignment:
Q  123 agcttgtacacttatattcctcatcataggtggaatatcaacttgacaacaaccaatacccgaacatgttccatt 197  Q
    |||||||| ||||||||  |||||  |||| |||||||||||||| ||||| || ||||||||||||||||||||    
T  1840385 agcttgtatacttatatatctcattctaggaggaatatcaacttggcaacaccctatacccgaacatgttccatt 1840311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 1866308 - 1866244
Alignment:
Q  133 cttatattcctcatcataggtggaatatcaacttgacaacaaccaatacccgaacatgttccatt 197  Q
    |||||||||| |||  |||| |||||||||||||| || || || ||||||||||||||| ||||    
T  1866308 cttatattccacattttaggaggaatatcaacttggcagcaccctatacccgaacatgtttcatt 1866244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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