View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20688_high_26 (Length: 286)
Name: NF20688_high_26
Description: NF20688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20688_high_26 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 11 - 265
Target Start/End: Original strand, 3842547 - 3842805
Alignment:
| Q |
11 |
cacagaagggttgttagcatgaagaaataccgaaaataaacgagnnnnnnnnnn--tccatgtagtaagtaaagacaatacccgaaaatagtgggtaatt |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
3842547 |
cacagaagggttgttagcatgaagaaataccaaaaataaacaagaaaaaaaaaaaatccatgtagtaagtaaagacaatacccgaaaatagtgggtagtt |
3842646 |
T |
|
| Q |
109 |
tggagaaaaggcacaaaacttagggcatcagaaattgaaactgaaactct--atgaatcaatgagatccaacttgaaaatttgatggagttgaataaaaa |
206 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3842647 |
tggacaaaaggctcaaaacttagggcatcagaaattgaaactgaaactctgtatgaatcaatgagatccaacttgaaaatttgatggagttgaataaaaa |
3842746 |
T |
|
| Q |
207 |
ttataaggtatagggattgtagttcagacgaaatctactttcccaaccataatgaggtt |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3842747 |
ctataaggtatagggattgtagttcagacgaaatctactttcccaaccataatgaggtt |
3842805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University