View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20688_high_3 (Length: 656)
Name: NF20688_high_3
Description: NF20688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20688_high_3 |
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| [»] chr4 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 255 - 656
Target Start/End: Original strand, 33387228 - 33387630
Alignment:
| Q |
255 |
gttaatatgaaccgaatccaaactcaatcggtcaatgttcttcagtaataactaataatgtaaaattttcaagagaaagaagattctaattctaagttaa |
354 |
Q |
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| T |
33387228 |
gttaatatgaaccgaatccaaactcaatcggtcaatgttcttcagtaataactaataatgtaaaattttcaagagaaagaagattctaattctaagttaa |
33387327 |
T |
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| Q |
355 |
cnnnnnnnnnn-gatgttatgctctaataaatagtacaaggaactctgccaattctttcggtggaattacttacaatcatcatgtccttcaaagttataa |
453 |
Q |
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| T |
33387328 |
caaaaaaaaaaagatgttatgctctaataaatagtacaaggaactctgccaattctttcggtggaattacttacaatcatcatgtccttcaaagttataa |
33387427 |
T |
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| Q |
454 |
cgaggtagtattagtgaacattcccatgaatgatgaaacatcaaattccaacccaaaagcaggaaaggtaaggtaaggcttcatttgcgattccgggctt |
553 |
Q |
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| T |
33387428 |
cgaggtagtattagtgaacattcccatgaatgatgaaacatcaaattccaatccaaaagcagaaaaggtaaggtaaggcttcatttgcgattccgggctt |
33387527 |
T |
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| Q |
554 |
catccttttccttctctcttttcttgtaaagcctgtcaagaacttgcttcgcttcacaccgtgggaaattagacaaatcatagtaatttggtgctatatc |
653 |
Q |
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| T |
33387528 |
catccttttccttctctcttttcttgtaaagcctgtcaagaacttgcttcgcttcacaccgtgggaaattagacaaatcatagtaatttggtgctatatc |
33387627 |
T |
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| Q |
654 |
aac |
656 |
Q |
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| T |
33387628 |
aac |
33387630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 33386974 - 33387090
Alignment:
| Q |
1 |
catgtgaacattttggcgaaaactggaagatctacactttttgtacttactatcatatatttgaagagacggaaaagaacgtgcaatttttagtactatc |
100 |
Q |
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| T |
33386974 |
catgtgaacattttggcgaaaactggaagatctacactttttgtatgtactatcatatatttgaagagacggaaaagaacgtgcaatttttagtactatc |
33387073 |
T |
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| Q |
101 |
atataattgaagagatg |
117 |
Q |
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| T |
33387074 |
atataattgaagagatg |
33387090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 524 - 656
Target Start/End: Original strand, 38777260 - 38777392
Alignment:
| Q |
524 |
aggtaaggcttcatttgcgattccgggcttcatccttttccttctctcttttcttgtaaagcctgtcaagaacttgcttcgcttcacaccgtgggaaatt |
623 |
Q |
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| T |
38777260 |
aggtaaggcttcatttacgattccgggcttcatccttttccttctctcgtttcttgtaaagcttttcaagaacacgctttgcttcacattgtggaaaatt |
38777359 |
T |
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| Q |
624 |
agacaaatcatagtaatttggtgctatatcaac |
656 |
Q |
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| T |
38777360 |
agacaaatcatagtaatgtggtgctatatcaac |
38777392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 383 - 482
Target Start/End: Original strand, 38777039 - 38777134
Alignment:
| Q |
383 |
aatagtacaaggaactctgccaattctttcggtggaattacttacaatcatcatgtccttcaaagttataacgaggtagtattagtgaacattcccatga |
482 |
Q |
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| T |
38777039 |
aatagtacaaggaactctgccaattctttcattaaaattactgacaaccagca-gtcctttaaaggt---acgaggtagtactaatgaacattcccatga |
38777134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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