View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20688_high_33 (Length: 242)
Name: NF20688_high_33
Description: NF20688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20688_high_33 |
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| [»] scaffold0121 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 46225133 - 46224907
Alignment:
| Q |
1 |
tttaaaagcagagaacaactgaacttctataattttaagaacacagtcatatattcagagatgcataatcaaataactcacaaatacacattgtcaaata |
100 |
Q |
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| T |
46225133 |
tttacaagcagagaacaactgaacttctataattttaagaacaaagtcatatattcagagatgcataatcaaataactcacaaatacacattgtcaaata |
46225034 |
T |
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| Q |
101 |
attaatctttatacaatcacttggaaaagaagtatattattttgagcacggttcttcaatgatcattatatatacacacacgcatatatacatggttctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46225033 |
attaatctttatacaatcacttggaaaagaagtatattattttgagcacggttcttcaatgatcattatatatacacacacgcatatatacatggttctt |
46224934 |
T |
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| Q |
201 |
tcaaaagaacacaaattatgtatatac |
227 |
Q |
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| T |
46224933 |
tcaaaagaacacaaattatgtatatac |
46224907 |
T |
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Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 64 - 147
Target Start/End: Original strand, 13611568 - 13611662
Alignment:
| Q |
64 |
cataatcaaataactcacaaatacacattgtca-----------aataattaatctttatacaatcacttggaaaagaagtatattattttgagc |
147 |
Q |
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| T |
13611568 |
cataatcaaataactcacaaatacacattgtcaaataatcgtcaaataatttatctttatacaatcacctggaaaagaagtatattattttgagc |
13611662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 64 - 147
Target Start/End: Complemental strand, 41095672 - 41095578
Alignment:
| Q |
64 |
cataatcaaataactcacaaatacacattgtcaaataat-----------taatctttatacaatcacttggaaaagaagtatattattttgagc |
147 |
Q |
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| T |
41095672 |
cataatcaaataactcacaaatacacattgtcaaataatcgtcaaataatttatctttatacaatcacctggaaaagaagtatattattttgagc |
41095578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 64 - 147
Target Start/End: Original strand, 14048177 - 14048271
Alignment:
| Q |
64 |
cataatcaaataactcacaaatacacattgtca-----------aataattaatctttatacaatcacttggaaaagaagtatattattttgagc |
147 |
Q |
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| T |
14048177 |
cataatcaaataactcacaaatacacattgtcaaataatcgtcaaataatttatctctatacaatcacctggaaaagaagtatattattttgagc |
14048271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 14981317 - 14981261
Alignment:
| Q |
1 |
tttaaaagcagagaacaactgaacttctataattttaagaacacagtcatatattca |
57 |
Q |
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|||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
14981317 |
tttacaagcagagaacacctgaacttctataattttaagaacacaatcatatattca |
14981261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 15410793 - 15410737
Alignment:
| Q |
1 |
tttaaaagcagagaacaactgaacttctataattttaagaacacagtcatatattca |
57 |
Q |
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|||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
15410793 |
tttacaagcagagaacacctgaacttctataattttaagaacacaatcatatattca |
15410737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 19649 - 19703
Alignment:
| Q |
1 |
tttaaaagcagagaacaactgaacttctataattttaagaacacagtcatatatt |
55 |
Q |
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|||| |||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
19649 |
tttacaagcagagaacacctgaacttctataattttaagaacacaatcatatatt |
19703 |
T |
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