View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20688_low_1 (Length: 887)
Name: NF20688_low_1
Description: NF20688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20688_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 465 - 870
Target Start/End: Original strand, 35408019 - 35408427
Alignment:
| Q |
465 |
ccgaatcgttttaataaatttttaatttgagaattgaatgtaatcaagattgctttatttgtacttcaagttatattatcttttcttacactcttaaact |
564 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35408019 |
ccgaatcgttttaataaatttttaatttgagaattgaatgtaatcaagattgctttatttgtacttcaagttatattatcttttcttacactcttaaact |
35408118 |
T |
|
| Q |
565 |
ttgttaaacattgttgtgatttgacaaatgnnnnnnnaatc---ataatattagtaatttactatttctgatggaagaagactttgcactaattatatgt |
661 |
Q |
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|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35408119 |
ttgttaaacattgttgtgatttgacaaatgtttttttaatcataataatattagtaatttactatttctgatggaagaagactttgcactaattatatgt |
35408218 |
T |
|
| Q |
662 |
actcaaataattaaaataaaatttgttcgtgtgcagcatgcgatcgcatacacaggatcatcacaagagatctacggtgcaaaagcatcaataagtgtgt |
761 |
Q |
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| T |
35408219 |
actcaaataattaaaataaaatttgttcgtgtgcagcatgcgatcgcgtacacaggatcatcacaagagatctacggtgcaaaagcatcaataagtgtgt |
35408318 |
T |
|
| Q |
762 |
gggatccatcaattgaagtgatgaacgagttcagtctctctcaaatttgggtcctctctggttctttcgatggtcctgatcttaacagcatcgaagctgg |
861 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35408319 |
gggatccatcaattgaagtgatgaacgagttcagtctctctcaaatttgggtcctctctggttctttcgatggtcctgatcttaacagcatcgaagctgg |
35408418 |
T |
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| Q |
862 |
atggcaggt |
870 |
Q |
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| T |
35408419 |
atggcaggt |
35408427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Complemental strand, 35408015 - 35407556
Alignment:
| Q |
1 |
caagttgaattgcaactttataaagtgatgaaaagaaaaattgatcttgttgacattttaatataatgagaagataacaacttgaagtttaattaaggat |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
35408015 |
caagttgaattgcaactttatagagtgatgaaaagaaaaattgatcttgttgacattttaatataatgggaagataacaacttgaagtttaattgaggat |
35407916 |
T |
|
| Q |
101 |
cagccagaatcatttgcaagctagatctatctgtgaaagttacattttgcatcaaattttatactattttaacccttgcattcatgatttagttatcatt |
200 |
Q |
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| T |
35407915 |
caaccagaatcatttgcaagctagatctatctgtgaaagttacattttgcatcaaattttatactattttaacccttgcattcatgatttagttatcatt |
35407816 |
T |
|
| Q |
201 |
atatctaaatctttaatgtcatatggtaaaataatata--gagtgtatcaaacagttgaggttgaatcttctgtttctccaaaaacannnnnnnnagtgt |
298 |
Q |
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| T |
35407815 |
atatctaaatctttaatgtcatatggtaaaataatataatgagtgtatcaaacagttgaggttgaatcttctgtttctccaaaaacattttttttagtgt |
35407716 |
T |
|
| Q |
299 |
catatggtaaagtaatcacacacnnnnnnnaaattgatgacattaactaaatattagtcatgacctaaaatttatagtaatttaatcctttatttctttt |
398 |
Q |
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| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
35407715 |
c--atggtaaagtaatcacacactttttttaaattgatgacattaactaaatattagttatgacctaaaatttatagtaatttaatcctttatttctttt |
35407618 |
T |
|
| Q |
399 |
gnnnnnnnntgtaagaatcaatactcaattatttgacatttatttggtaatgatattcttgg |
460 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
35407617 |
gaaaaaaaatgtaagaatcaatactcaattatttgacatttatttggtaatgatattattgg |
35407556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 740 - 870
Target Start/End: Complemental strand, 48018981 - 48018851
Alignment:
| Q |
740 |
gcaaaagcatcaataagtgtgtgggatccatcaattgaagtgatgaacgagttcagtctctctcaaatttgggtcctctctggttctttcgatggtcctg |
839 |
Q |
| |
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||||||||| |||||| ||||||||||||| | | ||||| | ||||| || ||||| |||||||||||| | || ||||| ||||| | ||| | | |
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| T |
48018981 |
gcaaaagcaacaataaatgtgtgggatccaacggtggaagtagtcaacgaatttagtctttctcaaatttggattctttctggatcttttggtggctcag |
48018882 |
T |
|
| Q |
840 |
atcttaacagcatcgaagctggatggcaggt |
870 |
Q |
| |
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||||||| ||||| |||||||| |||||||| |
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| T |
48018881 |
atcttaatagcattgaagctggttggcaggt |
48018851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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