View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20688_low_10 (Length: 458)
Name: NF20688_low_10
Description: NF20688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20688_low_10 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 6 - 458
Target Start/End: Original strand, 46308750 - 46309202
Alignment:
| Q |
6 |
agcagcacagaaaattcgatggactacaacctcagcaggataacaatttgtctaatgctcaatggtttgttcgttttggggatgtcatatccaagagctc |
105 |
Q |
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| T |
46308750 |
agcaccacagaaaattggatggactacaacctcagcaggataacaacttgtctaatgctcaatggtttgttcgttttggggatgtcatatccaagagctc |
46308849 |
T |
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| Q |
106 |
tctttgactcagcatcttcccattgtgattcatgactcgattaagacaaaagttaatgaagggttaaagtaaagactactcttttcagtgttttgatatt |
205 |
Q |
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| T |
46308850 |
tctttgactcagcatcttcccattgtgattcatgactcgattaagacaaaagttaatgaagggttaaagtaaagactactcttttcagtgttttgatatt |
46308949 |
T |
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| Q |
206 |
tccataattatatataaccttaacaaatagaaaggatgaccatttgggtttataaaacaatagaaagaaagcttaaggaattttctaatgcatattgcag |
305 |
Q |
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| T |
46308950 |
tccataattatatataaccttaaaaaatagaaaggatgaccatttgggtttataaaacaatagaaagaaagcttaaggaattttctaatgcatattgcag |
46309049 |
T |
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| Q |
306 |
aagcacttgttcctagatattagttggtttgggtataaatatccattattttactttttggatcgacgcttattttgtgactgttgatatggttgtatgg |
405 |
Q |
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| T |
46309050 |
aagcacttgttcctagatattagttggtttgggtataaatatccattattttactttttggatcgacgcttattttgtgaacggtgatatggttgtatgg |
46309149 |
T |
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| Q |
406 |
tgtaattaaatagcaacaccttatgtgtttatgttggaaacttttggcaagat |
458 |
Q |
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| T |
46309150 |
tgtaattaaatagcaacaccttatgtgtttatgttggaaacttttggcaagat |
46309202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 350 - 458
Target Start/End: Original strand, 46309203 - 46309312
Alignment:
| Q |
350 |
attattttactttttggatcgacgcttattttgtgactgttgatatggttgtatggtgtaattaaatagcaacacc-ttatgtgtttatgttggaaactt |
448 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
46309203 |
attattttactttttggatcgacgcttattttgtgaccgttgatatggttgtatggtgtaattaaatagcaacacctttatgtgtttatgttggaaattt |
46309302 |
T |
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| Q |
449 |
ttggcaagat |
458 |
Q |
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| T |
46309303 |
ttggcaagat |
46309312 |
T |
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