View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20688_low_14 (Length: 398)

Name: NF20688_low_14
Description: NF20688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20688_low_14
NF20688_low_14
[»] chr7 (9 HSPs)
chr7 (118-259)||(29586480-29586621)
chr7 (122-240)||(9992101-9992219)
chr7 (120-225)||(22076447-22076552)
chr7 (10-82)||(12197580-12197651)
chr7 (226-297)||(48655531-48655602)
chr7 (244-294)||(9741624-9741674)
chr7 (121-183)||(1324005-1324067)
chr7 (85-126)||(10531046-10531088)
chr7 (84-140)||(28386636-28386691)
[»] chr6 (3 HSPs)
chr6 (10-140)||(25003749-25003871)
chr6 (10-140)||(34635113-34635235)
chr6 (80-127)||(16110265-16110312)
[»] chr3 (8 HSPs)
chr3 (10-140)||(16473883-16474005)
chr3 (236-297)||(11969074-11969135)
chr3 (85-131)||(19545765-19545811)
chr3 (85-140)||(35410000-35410054)
chr3 (331-381)||(11968783-11968833)
chr3 (225-297)||(52642464-52642536)
chr3 (88-127)||(15997516-15997555)
chr3 (296-335)||(11968856-11968897)
[»] scaffold0657 (1 HSPs)
scaffold0657 (10-140)||(5538-5660)
[»] chr4 (5 HSPs)
chr4 (10-140)||(49496787-49496909)
chr4 (121-228)||(55160929-55161036)
chr4 (192-297)||(49496954-49497059)
chr4 (85-126)||(3294772-3294814)
chr4 (84-129)||(42343378-42343423)
[»] chr5 (6 HSPs)
chr5 (122-239)||(25668443-25668559)
chr5 (10-140)||(42859508-42859629)
chr5 (84-199)||(28200331-28200451)
chr5 (228-288)||(40686369-40686429)
chr5 (228-288)||(40686428-40686488)
chr5 (199-232)||(38986279-38986312)
[»] chr8 (5 HSPs)
chr8 (137-262)||(41959536-41959662)
chr8 (122-209)||(40842735-40842823)
chr8 (92-140)||(21233077-21233125)
chr8 (171-229)||(22641238-22641296)
chr8 (225-297)||(21232926-21232998)
[»] chr1 (8 HSPs)
chr1 (11-130)||(37668647-37668757)
chr1 (228-288)||(36075366-36075426)
chr1 (85-127)||(24274821-24274863)
chr1 (82-136)||(51444389-51444444)
chr1 (192-297)||(9538335-9538440)
chr1 (179-230)||(48298566-48298617)
chr1 (225-297)||(37668485-37668556)
chr1 (192-295)||(29387784-29387887)
[»] chr2 (4 HSPs)
chr2 (85-229)||(28502737-28502881)
chr2 (85-140)||(19710390-19710445)
chr2 (92-140)||(16132415-16132463)
chr2 (225-297)||(16132265-16132336)
[»] scaffold0807 (1 HSPs)
scaffold0807 (82-127)||(1208-1253)


Alignment Details
Target: chr7 (Bit Score: 98; Significance: 4e-48; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 118 - 259
Target Start/End: Original strand, 29586480 - 29586621
Alignment:
Q  118 ataatgtaacatcccgatattttgatacattatatatttgtcattcgtaatatttttctggatttataatttattcaacaacttattttatgcgtaaaat 217  Q
    |||||||||||||||| |||||| ||||||||||||| ||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  29586480 ataatgtaacatcccggtatttttatacattatatatatgtcattagtaatatttttcttgatttataatttattctacaacttattttatgcgtaaaat 29586579  T
Q  218 atttaagaaaatcttggcatttctttctttggtttattaatt 259  Q
    |||||||||||| ||| |||||| | |||||||| |||||||    
T  29586580 atttaagaaaatattgacatttcctactttggttaattaatt 29586621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 122 - 240
Target Start/End: Original strand, 9992101 - 9992219
Alignment:
Q  122 tgtaacatcccgatattttgatacattatatatttgtcattcgtaatatttttctggatttataatttattcaacaacttattttatgcgtaaaatattt 221  Q
    ||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  9992101 tgtaacatcccgatatttttatacattatatatatgtcatttgtaatatttttcttgatttataatttattctacaacttattttatgcgtaaaatattt 9992200  T
Q  222 aagaaaatcttggcatttc 240  Q
    |||||||| ||| ||||||    
T  9992201 aagaaaatattgacatttc 9992219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 120 - 225
Target Start/End: Original strand, 22076447 - 22076552
Alignment:
Q  120 aatgtaacatcccgatattttgatacattatatatttgtcattcgtaatatttttctggatttataatttattcaacaacttattttatgcgtaaaatat 219  Q
    ||||||||||||||| ||||  || |||||||||| |||||| | || ||||||||| |||||||||||||||  |||| ||||||||||||| ||| ||    
T  22076447 aatgtaacatcccgaaatttctatccattatatatatgtcatccatagtatttttcttgatttataatttatttgacaatttattttatgcgtgaaaaat 22076546  T
Q  220 ttaaga 225  Q
    ||||||    
T  22076547 ttaaga 22076552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 12197651 - 12197580
Alignment:
Q  10 attattctagtatcctttgatcttgtttttatgaagaatttctaccttaattaattttctgaatttctagttt 82  Q
    ||||||||||||||||||||| ||||||||| ||||||  ||||||||||||| | |||||||||||||||||    
T  12197651 attattctagtatcctttgat-ttgtttttacgaagaaactctaccttaattagtattctgaatttctagttt 12197580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 226 - 297
Target Start/End: Complemental strand, 48655602 - 48655531
Alignment:
Q  226 aaatcttggcatttctttctttggtttattaattagattttcctttacatagttcatttttattaatcaatt 297  Q
    ||||||||| ||| ||| |||||||||||||||||||||||| || | ||||| ||||||||||||||||||    
T  48655602 aaatcttggtattccttactttggtttattaattagattttctttcatatagtgcatttttattaatcaatt 48655531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 244 - 294
Target Start/End: Original strand, 9741624 - 9741674
Alignment:
Q  244 ctttggtttattaattagattttcctttacatagttcatttttattaatca 294  Q
    |||||||||||||||||| ||||| |||| |||||||||||||||||||||    
T  9741624 ctttggtttattaattaggttttcttttatatagttcatttttattaatca 9741674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 183
Target Start/End: Complemental strand, 1324067 - 1324005
Alignment:
Q  121 atgtaacatcccgatattttgatacattatatatttgtcattcgtaatatttttctggattta 183  Q
    |||||||||||| ||||||| ||||||||||||| ||| ||||||| || |||||| ||||||    
T  1324067 atgtaacatcccaatatttttatacattatatatatgtgattcgtagtacttttcttgattta 1324005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 10531088 - 10531046
Alignment:
Q  85 tagtttcgaggacgaaactatttt-aagggggtaataatgtaa 126  Q
    |||||||||||||||||| ||||| ||||||||||||||||||    
T  10531088 tagtttcgaggacgaaacaatttttaagggggtaataatgtaa 10531046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 28386636 - 28386691
Alignment:
Q  84 ttagtttcgaggacgaaactattttaagggggtaataatgtaacatcccgatatttt 140  Q
    |||||||||||||||||||||||||| | |||| | ||||||| || ||||||||||    
T  28386636 ttagtttcgaggacgaaactattttaggtgggt-agaatgtaagattccgatatttt 28386691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 5e-41; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 10 - 140
Target Start/End: Original strand, 25003749 - 25003871
Alignment:
Q  10 attattctagtatcctttgatcttgtttttatgaagaatttctaccttaattaattttctgaatttctagttttttagtttcgaggacgaaactatttta 109  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||        |||||||||||||||||||||||||    
T  25003749 attattctagtatcctttgatcttgtttttatgaagaaactctaccttaattagttttctgaatttc--------tagtttcgaggacgaaactatttta 25003840  T
Q  110 agggggtaataatgtaacatcccgatatttt 140  Q
    ||||||||| |||||||||||||||||||||    
T  25003841 agggggtaagaatgtaacatcccgatatttt 25003871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 10 - 140
Target Start/End: Original strand, 34635113 - 34635235
Alignment:
Q  10 attattctagtatcctttgatcttgtttttatgaagaatttctaccttaattaattttctgaatttctagttttttagtttcgaggacgaaactatttta 109  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||| |||||        |||||||||||||||||||||||||    
T  34635113 attattctagtatcctttgatcttgtttttatgaagaaactctaccttaattagttttctggatttc--------tagtttcgaggacgaaactatttta 34635204  T
Q  110 agggggtaataatgtaacatcccgatatttt 140  Q
    ||||||||| |||||||||||||||||||||    
T  34635205 agggggtaagaatgtaacatcccgatatttt 34635235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 127
Target Start/End: Complemental strand, 16110312 - 16110265
Alignment:
Q  80 ttttttagtttcgaggacgaaactattttaagggggtaataatgtaac 127  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  16110312 ttttttagtttagaggacgaaactattttaaggggataataatgtaac 16110265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 5e-41; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 10 - 140
Target Start/End: Original strand, 16473883 - 16474005
Alignment:
Q  10 attattctagtatcctttgatcttgtttttatgaagaatttctaccttaattaattttctgaatttctagttttttagtttcgaggacgaaactatttta 109  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||        |||||||||||||||||||||||||    
T  16473883 attattctagtatcctttgatcttgtttttatgaagaaactctaccttaattagttttctgaatttc--------tagtttcgaggacgaaactatttta 16473974  T
Q  110 agggggtaataatgtaacatcccgatatttt 140  Q
    ||||||||| |||||||||||||||||||||    
T  16473975 agggggtaagaatgtaacatcccgatatttt 16474005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 236 - 297
Target Start/End: Complemental strand, 11969135 - 11969074
Alignment:
Q  236 atttctttctttggtttattaattagattttcctttacatagttcatttttattaatcaatt 297  Q
    ||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  11969135 atttcttactttggtttattaattagattttcttttacatagttcttttttattaatcaatt 11969074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 85 - 131
Target Start/End: Complemental strand, 19545811 - 19545765
Alignment:
Q  85 tagtttcgaggacgaaactattttaagggggtaataatgtaacatcc 131  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||    
T  19545811 tagtttcgaggacgaaactattttaaagggataataatgtaacatcc 19545765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 85 - 140
Target Start/End: Original strand, 35410000 - 35410054
Alignment:
Q  85 tagtttcgaggacgaaactattttaagggggtaataatgtaacatcccgatatttt 140  Q
    |||||||||||||||||||||||||| ||||||||||||||||  ||| |||||||    
T  35410000 tagtttcgaggacgaaactattttaa-ggggtaataatgtaacgccccaatatttt 35410054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 331 - 381
Target Start/End: Complemental strand, 11968833 - 11968783
Alignment:
Q  331 aaaaagatgctagccacgtcgaattatagttatttatattcatttgttcct 381  Q
    |||||||||| |||||||| |||| || |||||||||||||||||||||||    
T  11968833 aaaaagatgccagccacgttgaatgatggttatttatattcatttgttcct 11968783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 297
Target Start/End: Complemental strand, 52642536 - 52642464
Alignment:
Q  225 aaaatcttggcatttctttctttggtttattaattagattttcctttacatagttcatttttattaatcaatt 297  Q
    |||||||||||||| |||  | ||||||||||||| ||||||  ||   ||||||||||||||||||||||||    
T  52642536 aaaatcttggcattccttaatatggtttattaatttgattttgtttcttatagttcatttttattaatcaatt 52642464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 88 - 127
Target Start/End: Complemental strand, 15997555 - 15997516
Alignment:
Q  88 tttcgaggacgaaactattttaagggggtaataatgtaac 127  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  15997555 tttcgaggacgaaactattttaagaggggaataatgtaac 15997516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 335
Target Start/End: Complemental strand, 11968897 - 11968856
Alignment:
Q  296 ttgttattcttgttaatagaacta--ataccttgaagaaaaa 335  Q
    ||||||||||||||||||||||||  ||||||||||||||||    
T  11968897 ttgttattcttgttaatagaactaatataccttgaagaaaaa 11968856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0657 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 10 - 140
Target Start/End: Complemental strand, 5660 - 5538
Alignment:
Q  10 attattctagtatcctttgatcttgtttttatgaagaatttctaccttaattaattttctgaatttctagttttttagtttcgaggacgaaactatttta 109  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||| |||||||        |||||||||||||||||||||||    
T  5660 attattctagtatcctttgatcttgtttttatgaagaaactctaccttaattagttttctgtatttcta--------gtttcgaggacgaaactatttta 5569  T
Q  110 agggggtaataatgtaacatcccgatatttt 140  Q
    ||||||||| |||||||||||||||||||||    
T  5568 agggggtaagaatgtaacatcccgatatttt 5538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 10 - 140
Target Start/End: Original strand, 49496787 - 49496909
Alignment:
Q  10 attattctagtatcctttgatcttgtttttatgaagaatttctaccttaattaattttctgaatttctagttttttagtttcgaggacgaaactatttta 109  Q
    ||||||||||||||||||||| ||||||||||||||||  ||||||||||||| | || ||||||||||||        |||||||||||||||||||||    
T  49496787 attattctagtatcctttgattttgtttttatgaagaaactctaccttaattagtcttatgaatttctagt--------ttcgaggacgaaactatttta 49496878  T
Q  110 agggggtaataatgtaacatcccgatatttt 140  Q
    |||||||||||||||||||||||||||||||    
T  49496879 agggggtaataatgtaacatcccgatatttt 49496909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 121 - 228
Target Start/End: Original strand, 55160929 - 55161036
Alignment:
Q  121 atgtaacatcccgatattttgatacattatatatttgtcattcgtaatatttttctggatttataatttattcaacaacttattttatgcgtaaaatatt 220  Q
    |||||||||||||||||||| ||| ||||||||| ||||| | |||||||| |||| |||||||||||||||| |||||||||| |||| |||||  | |    
T  55160929 atgtaacatcccgatatttttatatattatatatatgtcagttgtaatattcttcttgatttataatttattctacaacttattatatgtgtaaagaact 55161028  T
Q  221 taagaaaa 228  Q
    ||||||||    
T  55161029 taagaaaa 55161036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 297
Target Start/End: Original strand, 49496954 - 49497059
Alignment:
Q  192 tcaacaacttattttatgcgtaaaatatttaagaaaatcttggcatttctttctttggtttattaattagattttcctttacatagttcatttttattaa 291  Q
    ||||||| |||||||||| |  | | |||| | |||||||||||||| ||| |||| | ||||||||||| ||||| || | |||||||||||||| |||    
T  49496954 tcaacaatttattttatgtgcgagaaattttacaaaatcttggcattccttacttttggttattaattaggttttctttcatatagttcatttttaataa 49497053  T
Q  292 tcaatt 297  Q
    ||||||    
T  49497054 tcaatt 49497059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 3294772 - 3294814
Alignment:
Q  85 tagtttcgaggacgaaactatt-ttaagggggtaataatgtaa 126  Q
    |||||||||||||||||| ||| ||||||||||||||||||||    
T  3294772 tagtttcgaggacgaaacaattcttaagggggtaataatgtaa 3294814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 129
Target Start/End: Original strand, 42343378 - 42343423
Alignment:
Q  84 ttagtttcgaggacgaaactattttaagggggtaataatgtaacat 129  Q
    ||||||| || || |||||||||||||| |||||||||||||||||    
T  42343378 ttagttttgaagatgaaactattttaagagggtaataatgtaacat 42343423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 122 - 239
Target Start/End: Original strand, 25668443 - 25668559
Alignment:
Q  122 tgtaacatcccgata-ttttgatacattatatatttgtcattcgtaatatttttctggatttataatttattcaacaacttattttatgcgtaaaatatt 220  Q
    ||||||||||||||| |||| |||||||||||||  ||||||||||||||| |||| || ||||||||||||| ||||||||||||||||||||||||||    
T  25668443 tgtaacatcccgataatttttatacattatatat--gtcattcgtaatattcttcttgagttataatttattctacaacttattttatgcgtaaaatatt 25668540  T
Q  221 taagaaaatcttggcattt 239  Q
    ||||||||||||| |||||    
T  25668541 taagaaaatcttgacattt 25668559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 10 - 140
Target Start/End: Original strand, 42859508 - 42859629
Alignment:
Q  10 attattctagtatcctttgatcttgtttttatgaagaatttctaccttaattaattttctgaatttctagttttttagtttcgaggacgaaactatttta 109  Q
    ||||||||||||||||||||| ||||||||||||||||  ||||||||||||| |||||||||||| |||||||        ||||||||||||||||||    
T  42859508 attattctagtatcctttgat-ttgtttttatgaagaaactctaccttaattagttttctgaatttatagtttt--------gaggacgaaactatttta 42859598  T
Q  110 agggggtaataatgtaacatcccgatatttt 140  Q
    ||||||||||||||||||  ||| |||||||    
T  42859599 agggggtaataatgtaacgccccaatatttt 42859629  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 84 - 199
Target Start/End: Original strand, 28200331 - 28200451
Alignment:
Q  84 ttagtttcgaggacgaaactattttaagggggtaataatgtaacatcccgatat-tttgatacattatatatttgtcattcgtaatatttttctgg---- 178  Q
    |||||||||||||| |||  ||||||||||| | |||||||||||| | ||| | ||| ||||||||||||| |||||||||||  |||||||| |        
T  28200331 ttagtttcgaggacaaaataattttaaggggttcataatgtaacattctgatttattttatacattatatatatgtcattcgtagcatttttcttgattt 28200430  T
Q  179 atttataatttattcaacaac 199  Q
    |||||||||||||||||||||    
T  28200431 atttataatttattcaacaac 28200451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 228 - 288
Target Start/End: Original strand, 40686369 - 40686429
Alignment:
Q  228 atcttggcatttctttctttggtttattaattagattttcctttacatagttcatttttat 288  Q
    ||||||||||| |||  ||| ||||||||||||||||||| |||| |||||||||||||||    
T  40686369 atcttggcattccttaatttagtttattaattagattttcttttatatagttcatttttat 40686429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 228 - 288
Target Start/End: Original strand, 40686428 - 40686488
Alignment:
Q  228 atcttggcatttctttctttggtttattaattagattttcctttacatagttcatttttat 288  Q
    ||||||||||| |||  ||| ||||||||||||||||||| |||| |||||||||||||||    
T  40686428 atcttggcattccttaatttagtttattaattagattttcttttatatagttcatttttat 40686488  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 232
Target Start/End: Complemental strand, 38986312 - 38986279
Alignment:
Q  199 cttattttatgcgtaaaatatttaagaaaatctt 232  Q
    |||||||||| |||||||||||||||||||||||    
T  38986312 cttattttatacgtaaaatatttaagaaaatctt 38986279  T

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Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 137 - 262
Target Start/End: Complemental strand, 41959662 - 41959536
Alignment:
Q  137 ttttgatacattatatatttgtcattcgtaatatttttctggatttataatttattcaacaacttattttatgcgtaaaatattt-aagaaaatcttggc 235  Q
    |||| ||||||||||||| |||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||| || ||||| ||| |    
T  41959662 tttttatacattatatatatgtcattcgtaatatttttcttaatttataatttattctacaacttattttatgcgtaaaatatttaaaaaaaatattgac 41959563  T
Q  236 atttctttctttggtttattaattaga 262  Q
    ||||| | |||||||| ||||||||||    
T  41959562 atttcctactttggttaattaattaga 41959536  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 122 - 209
Target Start/End: Complemental strand, 40842823 - 40842735
Alignment:
Q  122 tgtaacatcccgatattttgatacattatatatttgtcattcgtaatat-ttttctggatttataatttattcaacaacttattttatg 209  Q
    ||||||||||| ||||||| |||||| |||||| ||||||||||||||| |||| |  ||||||||||||||| |||||||||||||||    
T  40842823 tgtaacatcccaatatttttatacatcatatatatgtcattcgtaatattttttttttatttataatttattctacaacttattttatg 40842735  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 21233125 - 21233077
Alignment:
Q  92 gaggacgaaactattttaagggggtaataatgtaacatcccgatatttt 140  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||    
T  21233125 gaggacgaaactattttaagtgggtaataatgtaacatcccaatatttt 21233077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 22641296 - 22641238
Alignment:
Q  171 ttttctggatttataatttattcaacaacttattttatgcgtaaaatatttaagaaaat 229  Q
    |||||| |||||||||||||||||||||||||||||| | |||||  ||||||||||||    
T  22641296 ttttcttgatttataatttattcaacaacttattttacgtgtaaagaatttaagaaaat 22641238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 225 - 297
Target Start/End: Complemental strand, 21232998 - 21232926
Alignment:
Q  225 aaaatcttggcatttctttctttggtttattaattagattttcctttacatagttcatttttattaatcaatt 297  Q
    |||||||| | ||| ||| |||||||| ||||||||| ||||| || | ||||||||||||||||||||||||    
T  21232998 aaaatcttagtattccttactttggttcattaattaggttttctttcatatagttcatttttattaatcaatt 21232926  T

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Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 11 - 130
Target Start/End: Complemental strand, 37668757 - 37668647
Alignment:
Q  11 ttattctagtatcctttgatcttgtttttatgaagaatttctaccttaattaattttctgaatttctagttttttagtttcgaggacgaaactattttaa 110  Q
    ||||||||| |||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||        ||||||||||||||||||||||||    
T  37668757 ttattctagcatcctttgatcttgtttttatgaagaaactctaccttaattagttttctgaatttcta--------gtttcgaggacgaaactattttaa 37668666  T
Q  111 gggggtaataatgtaacatc 130  Q
     |||||||||||||||||||    
T  37668665 -ggggtaataatgtaacatc 37668647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 228 - 288
Target Start/End: Original strand, 36075366 - 36075426
Alignment:
Q  228 atcttggcatttctttctttggtttattaattagattttcctttacatagttcatttttat 288  Q
    ||||||||||| ||| |||||||||||||||||||||||| |||| |||||||||||||||    
T  36075366 atcttggcattccttactttggtttattaattagattttcttttatatagttcatttttat 36075426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 127
Target Start/End: Original strand, 24274821 - 24274863
Alignment:
Q  85 tagtttcgaggacgaaactattttaagggggtaataatgtaac 127  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  24274821 tagtttcgaggacgaaactattttaagggggtaataatgtaac 24274863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 136
Target Start/End: Complemental strand, 51444444 - 51444389
Alignment:
Q  82 ttttagtttcgaggacgaaactatttt-aagggggtaataatgtaacatcccgata 136  Q
    ||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||    
T  51444444 ttttagtttcggggacgaaattatttttaagggggtaataatgtaacatcccgata 51444389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 297
Target Start/End: Complemental strand, 9538440 - 9538335
Alignment:
Q  192 tcaacaacttattttatgcgtaaaatatttaagaaaatcttggcatttctttctttggtttattaattagattttcctttacatagttcatttttattaa 291  Q
    ||||||| |||||||||| |  |||| ||| | ||||||||| |||| ||| | || | ||||||||||||||||| || | |||||||||||||| |||    
T  9538440 tcaacaatttattttatgtgcgaaattttttacaaaatcttgacattccttacgtttggttattaattagattttctttcatatagttcatttttaataa 9538341  T
Q  292 tcaatt 297  Q
    ||||||    
T  9538340 tcaatt 9538335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 48298617 - 48298566
Alignment:
Q  179 atttataatttattcaacaacttattttatgcgtaaaatatttaagaaaatc 230  Q
    |||||||||||||||||||| |||||||||| |||||  |||||||||||||    
T  48298617 atttataatttattcaacaatttattttatgtgtaaagaatttaagaaaatc 48298566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 297
Target Start/End: Complemental strand, 37668556 - 37668485
Alignment:
Q  225 aaaatcttggcatttctttctttggtttattaattagattttcctttacatagttcatttttattaatcaatt 297  Q
    |||||||||| ||| ||| |||||||||||||||||| |||||  | | ||||||| ||||||||||||||||    
T  37668556 aaaatcttggtattccttactttggtttattaattaggttttctatcatatagttc-tttttattaatcaatt 37668485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 192 - 295
Target Start/End: Original strand, 29387784 - 29387887
Alignment:
Q  192 tcaacaacttattttatgcgtaaaatatttaagaaaatcttggcatttctttctttggtttattaattagattttcctttacatagttcatttttattaa 291  Q
    ||||||| |||||||||| |  | | |||| | |||||||||||||| ||| |||| | ||||||||||| ||||| || | |||||| ||||||| |||    
T  29387784 tcaacaatttattttatgtgcgagaaattttacaaaatcttggcattccttacttttggttattaattaggttttctttcatatagtttatttttaataa 29387883  T
Q  292 tcaa 295  Q
    ||||    
T  29387884 tcaa 29387887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 85 - 229
Target Start/End: Complemental strand, 28502881 - 28502737
Alignment:
Q  85 tagtttcgaggacgaaactatttt-aagggggtaataatgtaacatcccgatattttgatacattatatatttgtcattcgtaatatttttctggattta 183  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||| ||| ||  |||||| |||||||||| || |||||| ||||||    
T  28502881 tagtttcgaggatgaaactatttttaagggggtaataatgtaacatctcgatatttt-atagatattatattggtcattcgtagtaattttcttgattta 28502783  T
Q  184 taatttattcaacaacttattttatgcgtaaaatatttaagaaaat 229  Q
    | | |||||  ||||||||| ||||  |||||  ||||||||||||    
T  28502782 tgaattatttgacaacttatattatatgtaaagaatttaagaaaat 28502737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 85 - 140
Target Start/End: Complemental strand, 19710445 - 19710390
Alignment:
Q  85 tagtttcgaggacgaaactattttaagggggtaataatgtaacatcccgatatttt 140  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  19710445 tagtttcgaggacgaaactattttaagggggtaataatgtaacaccccaatatttt 19710390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 16132463 - 16132415
Alignment:
Q  92 gaggacgaaactattttaagggggtaataatgtaacatcccgatatttt 140  Q
    |||||||||||||||||||| |||||||||||||||  ||| |||||||    
T  16132463 gaggacgaaactattttaagagggtaataatgtaacgccccaatatttt 16132415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 297
Target Start/End: Complemental strand, 16132336 - 16132265
Alignment:
Q  225 aaaatcttggcatttctttctttggtttattaattagattttcctttacatagttcatttttattaatcaatt 297  Q
    |||||||||  ||| ||| |||||||| ||||||||| ||||| || | ||||||| ||||||||||||||||    
T  16132336 aaaatcttgctattccttactttggttcattaattaggttttctttcatatagttc-tttttattaatcaatt 16132265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0807 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 82 - 127
Target Start/End: Complemental strand, 1253 - 1208
Alignment:
Q  82 ttttagtttcgaggacgaaactattttaagggggtaataatgtaac 127  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  1253 ttttagtttcgaggacgaaactgttttaagggggtaataatgtaac 1208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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