View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20688_low_17 (Length: 357)
Name: NF20688_low_17
Description: NF20688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20688_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 36144939 - 36145171
Alignment:
| Q |
17 |
aacactcgcattaccttcaatcattttaatggccgagagagaatccccttgtacaacaacttataatgaaatccatagtgttaacatatcaaaagactag |
116 |
Q |
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| T |
36144939 |
aacactcgcattaccttcaatcattttaatggccgagagagaatccccttgtacaacaacttataatgaaatccatagtgttaacatatcaaaagactag |
36145038 |
T |
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| Q |
117 |
taaatgtctaacaaaaacctcttaactaagcgaaatataaatataaaataagcttgaacattaatttattagaagaaaatattaattcttttaatatttg |
216 |
Q |
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| T |
36145039 |
taaatgtctaacaaaaacctcttaactaagcgaaatataaatataaaacaagcttgaagattaatttattagaagaaaatattaattcttttaatatttg |
36145138 |
T |
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| Q |
217 |
tttgacaatataaacttcatatgtatattataa |
249 |
Q |
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| T |
36145139 |
tttgacaatataaacttcatatgtatattataa |
36145171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 233
Target Start/End: Complemental strand, 7961003 - 7960925
Alignment:
| Q |
155 |
aaatataaaataagcttgaacattaatttattagaagaaaatattaattcttttaatatttgtttgacaatataaactt |
233 |
Q |
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| T |
7961003 |
aaatataaaataagtatgacgattaatttattagaagaaaatgttagttatttttatatttgtttgacaatattaactt |
7960925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 8734373 - 8734321
Alignment:
| Q |
176 |
attaatttattagaagaaaatattaattcttttaatatttgtttgacaatata |
228 |
Q |
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| T |
8734373 |
attaatttattagaagaaaatattaattcttcttatatttgtttgacaatata |
8734321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 18991320 - 18991372
Alignment:
| Q |
170 |
ttgaacattaatttattagaagaaaatattaattcttttaatatttgtttgac |
222 |
Q |
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| T |
18991320 |
ttgaagattaatttattagaagaaaatgttaattctttttatatttgtttgac |
18991372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 5061459 - 5061517
Alignment:
| Q |
176 |
attaatttattagaagaaaatattaattcttttaatatttgtttgacaatataaacttc |
234 |
Q |
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|||| |||||||||||||||||||| || |||| ||||||||||| |||||| |||||| |
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| T |
5061459 |
attattttattagaagaaaatattagttttttttatatttgtttggcaatatcaacttc |
5061517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 233
Target Start/End: Original strand, 20025187 - 20025265
Alignment:
| Q |
155 |
aaatataaaataagcttgaacattaatttattagaagaaaatattaattcttttaatatttgtttgacaatataaactt |
233 |
Q |
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|||||||||| || | |||| |||||||||| |||||||||| ||| || | || |||||||||||||||||| ||||| |
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| T |
20025187 |
aaatataaaacaaacatgaagattaatttatcagaagaaaatgttagttgtatttatatttgtttgacaatattaactt |
20025265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 48583308 - 48583361
Alignment:
| Q |
181 |
tttattagaagaaaatattaattcttttaatatttgtttgacaatataaacttc |
234 |
Q |
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|||||||||||||||| ||| ||||||| |||||||||||||||| | |||||| |
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| T |
48583308 |
tttattagaagaaaatgttatttctttttatatttgtttgacaattttaacttc |
48583361 |
T |
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