View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20688_low_19 (Length: 339)

Name: NF20688_low_19
Description: NF20688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20688_low_19
NF20688_low_19
[»] chr7 (26 HSPs)
chr7 (1-319)||(10292745-10293063)
chr7 (70-237)||(22067690-22067861)
chr7 (87-267)||(21471873-21472053)
chr7 (127-212)||(2630389-2630474)
chr7 (75-246)||(7815388-7815559)
chr7 (70-179)||(7142158-7142267)
chr7 (110-246)||(20446303-20446438)
chr7 (70-246)||(23124960-23125137)
chr7 (76-267)||(315251-315431)
chr7 (70-267)||(29544579-29544778)
chr7 (71-267)||(9801731-9801928)
chr7 (71-186)||(9761354-9761469)
chr7 (70-171)||(7372519-7372621)
chr7 (14-120)||(2632441-2632547)
chr7 (100-237)||(30405685-30405821)
chr7 (70-186)||(1255152-1255268)
chr7 (70-186)||(20461587-20461702)
chr7 (69-169)||(24596960-24597059)
chr7 (68-235)||(5312675-5312842)
chr7 (68-236)||(8308924-8309088)
chr7 (78-119)||(9066198-9066239)
chr7 (68-232)||(12358655-12358818)
chr7 (163-246)||(21545705-21545789)
chr7 (138-179)||(7777985-7778026)
chr7 (127-179)||(9755910-9755962)
chr7 (200-267)||(20017143-20017211)
[»] chr1 (21 HSPs)
chr1 (11-246)||(30781761-30781996)
chr1 (68-212)||(8247570-8247714)
chr1 (70-267)||(12423771-12423969)
chr1 (73-245)||(25727788-25727961)
chr1 (73-245)||(25736196-25736369)
chr1 (70-267)||(30675544-30675742)
chr1 (73-267)||(26657539-26657734)
chr1 (71-246)||(18300881-18301057)
chr1 (72-246)||(11769872-11770047)
chr1 (80-263)||(25730432-25730616)
chr1 (127-246)||(25494367-25494486)
chr1 (70-235)||(26102117-26102282)
chr1 (73-168)||(23223475-23223570)
chr1 (71-235)||(31313613-31313777)
chr1 (127-267)||(23519625-23519766)
chr1 (68-151)||(18391140-18391222)
chr1 (71-246)||(19257684-19257857)
chr1 (127-218)||(23521636-23521727)
chr1 (71-246)||(26854198-26854371)
chr1 (70-186)||(34381768-34381886)
chr1 (71-246)||(52271123-52271298)
[»] chr2 (18 HSPs)
chr2 (70-267)||(16593607-16593805)
chr2 (77-246)||(25474104-25474273)
chr2 (110-236)||(35707903-35708029)
chr2 (68-246)||(30998829-30999007)
chr2 (127-246)||(1733208-1733327)
chr2 (68-246)||(19949435-19949611)
chr2 (87-246)||(27417141-27417301)
chr2 (68-185)||(27917923-27918040)
chr2 (65-179)||(19541092-19541205)
chr2 (71-184)||(39730508-39730620)
chr2 (70-235)||(17152213-17152379)
chr2 (70-178)||(35031762-35031870)
chr2 (68-162)||(28278386-28278480)
chr2 (135-246)||(18818821-18818938)
chr2 (70-235)||(21505028-21505194)
chr2 (127-179)||(15829238-15829290)
chr2 (127-175)||(22511062-22511110)
chr2 (115-179)||(24188074-24188138)
[»] chr3 (23 HSPs)
chr3 (73-267)||(25883166-25883361)
chr3 (70-267)||(1475136-1475335)
chr3 (70-246)||(19219089-19219266)
chr3 (74-246)||(12573354-12573526)
chr3 (74-246)||(13549818-13549990)
chr3 (71-267)||(10341856-10342045)
chr3 (77-208)||(11521206-11521337)
chr3 (70-179)||(21017937-21018046)
chr3 (115-235)||(16970566-16970687)
chr3 (73-179)||(11474909-11475015)
chr3 (70-179)||(26297809-26297915)
chr3 (76-179)||(28422519-28422621)
chr3 (70-179)||(8402498-8402605)
chr3 (76-153)||(13911331-13911408)
chr3 (127-246)||(19263782-19263905)
chr3 (72-179)||(26387791-26387897)
chr3 (127-186)||(33914506-33914565)
chr3 (78-199)||(27415236-27415357)
chr3 (76-246)||(18474236-18474406)
chr3 (127-186)||(25919410-25919469)
chr3 (70-180)||(2729563-2729673)
chr3 (195-267)||(11521350-11521423)
chr3 (206-246)||(19543002-19543042)
[»] chr8 (22 HSPs)
chr8 (70-267)||(16054354-16054552)
chr8 (70-246)||(13081813-13081992)
chr8 (87-173)||(26882485-26882571)
chr8 (77-186)||(29047258-29047367)
chr8 (98-246)||(16052155-16052304)
chr8 (73-246)||(30850978-30851151)
chr8 (70-246)||(14424691-14424867)
chr8 (70-267)||(28902149-28902347)
chr8 (67-186)||(28074570-28074688)
chr8 (155-267)||(11310113-11310225)
chr8 (68-186)||(32239345-32239463)
chr8 (68-179)||(27097746-27097858)
chr8 (71-179)||(28260236-28260343)
chr8 (77-167)||(31436546-31436635)
chr8 (70-243)||(11437479-11437653)
chr8 (70-169)||(5570097-5570196)
chr8 (68-179)||(10867046-10867156)
chr8 (135-186)||(24120348-24120399)
chr8 (70-237)||(24696641-24696809)
chr8 (139-246)||(28291979-28292087)
chr8 (70-151)||(24584698-24584779)
chr8 (68-120)||(12774848-12774900)
[»] chr6 (11 HSPs)
chr6 (71-266)||(15574985-15575181)
chr6 (98-267)||(15998599-15998768)
chr6 (98-267)||(17860305-17860475)
chr6 (98-179)||(24507388-24507469)
chr6 (71-246)||(26499725-26499900)
chr6 (70-186)||(24617571-24617686)
chr6 (70-120)||(16527950-16528000)
chr6 (75-152)||(9943123-9943199)
chr6 (132-246)||(33638383-33638498)
chr6 (67-215)||(16439515-16439663)
chr6 (127-181)||(22262458-22262512)
[»] chr5 (24 HSPs)
chr5 (68-267)||(22229862-22230062)
chr5 (76-237)||(12339902-12340063)
chr5 (109-212)||(25075225-25075328)
chr5 (109-212)||(25133194-25133297)
chr5 (70-176)||(15205703-15205809)
chr5 (79-218)||(22754963-22755103)
chr5 (87-235)||(11274219-11274368)
chr5 (75-267)||(26329926-26330117)
chr5 (70-178)||(16634106-16634214)
chr5 (70-186)||(24841813-24841929)
chr5 (70-246)||(7742748-7742924)
chr5 (68-267)||(17027585-17027785)
chr5 (127-186)||(17381983-17382042)
chr5 (70-186)||(18222553-18222669)
chr5 (70-233)||(20694700-20694863)
chr5 (194-246)||(19763764-19763816)
chr5 (70-246)||(25680656-25680823)
chr5 (127-246)||(16622555-16622674)
chr5 (77-186)||(26070541-26070649)
chr5 (70-148)||(16603590-16603668)
chr5 (70-152)||(25367654-25367735)
chr5 (194-246)||(18452690-18452742)
chr5 (70-186)||(25594631-25594747)
chr5 (128-245)||(30072233-30072351)
[»] chr4 (21 HSPs)
chr4 (76-218)||(9782890-9783032)
chr4 (75-267)||(15192268-15192461)
chr4 (68-186)||(25315170-25315288)
chr4 (70-267)||(17026553-17026751)
chr4 (86-246)||(31859779-31859939)
chr4 (70-267)||(27302838-27303035)
chr4 (76-263)||(34864156-34864342)
chr4 (75-175)||(19601863-19601963)
chr4 (70-267)||(10320077-10320274)
chr4 (79-186)||(5676268-5676375)
chr4 (68-175)||(1695796-1695904)
chr4 (127-267)||(47024622-47024763)
chr4 (127-246)||(18898099-18898218)
chr4 (70-225)||(26159816-26159971)
chr4 (194-267)||(51884786-51884860)
chr4 (140-237)||(13064555-13064653)
chr4 (132-186)||(9288331-9288385)
chr4 (78-179)||(29437539-29437639)
chr4 (76-120)||(1673825-1673869)
chr4 (76-120)||(1676300-1676344)
chr4 (76-120)||(1682828-1682872)
[»] scaffold0002 (1 HSPs)
scaffold0002 (92-246)||(447058-447212)
[»] scaffold0188 (1 HSPs)
scaffold0188 (71-246)||(26833-27009)
[»] scaffold0171 (2 HSPs)
scaffold0171 (70-237)||(21457-21625)
scaffold0171 (140-246)||(6325-6431)
[»] scaffold0386 (2 HSPs)
scaffold0386 (70-179)||(13017-13126)
scaffold0386 (78-185)||(8649-8756)
[»] scaffold0065 (1 HSPs)
scaffold0065 (98-179)||(12332-12413)
[»] scaffold0337 (1 HSPs)
scaffold0337 (98-179)||(1896-1977)
[»] scaffold0011 (1 HSPs)
scaffold0011 (70-246)||(228065-228239)


Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 10292745 - 10293063
Alignment:
Q  1 tgaagacaacaagatgagagttagagcagttgttgaggatttaagcaaaatattatannnnnnncaattgagtcgttgtaattcaattttatccaagatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||       |||| |||||||||||||||| ||||||||||||||    
T  10292745 tgaagacaacaagatgagagttagagcagttgttgaggatttaagcaaaatattgtatttttttcaatcgagtcgttgtaattcagttttatccaagatc 10292844  T
Q  101 atgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaaggataaaggatgaagaactgaagat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10292845 atgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaaggataaaggatgaagaactgaagat 10292944  T
Q  201 caagggttcttagaaggtgtttgaatacaatacaaagggaagaaaacaatttaaagttcctaggagtatatatatagcaatggcatctgctacctgtgaa 300  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10292945 caagggttcttagaaggtgtttgaatacaataaaaagggaagaaaacaatttaaagttcctaggagtatatatatagcaatggcatctgctacctgtgaa 10293044  T
Q  301 cttcagtggctgctctatt 319  Q
    |||||||||||||||||||    
T  10293045 cttcagtggctgctctatt 10293063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 70 - 237
Target Start/End: Complemental strand, 22067861 - 22067690
Alignment:
Q  70 gagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgttta--gactattttgtagtgaggaatcat--gtaaatcatcaaatcaagac 165  Q
    ||||| ||||||||||||||||||| |||||||||||| |||||||| |||   || | |||||||||||||||||||  ||||||||||||||||||||    
T  22067861 gagtcattgtaattcaattttatcctagatcatgcaactccataggtattttttgagtgttttgtagtgaggaatcatatgtaaatcatcaaatcaagac 22067762  T
Q  166 atcatgtgaaggataaaggatgaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaag 237  Q
    |||||||||||||| ||||||||| || |||| ||||||||||||||||||||  ||||| |||||||||||    
T  22067761 atcatgtgaaggatcaaggatgaacaattgaaaatcaagggttcttagaaggttgttgaagacaatacaaag 22067690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 87 - 267
Target Start/End: Original strand, 21471873 - 21472053
Alignment:
Q  87 ttttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaaggataaaggat 186  Q
    |||||||| |||||||||||  |||||||||||| || | |||||||||||||||||||||||||||  |||||| ||||||| |||| |||| ||||||    
T  21471873 ttttatcctagatcatgcaattccataggtgttttgagtgttttgtagtgaggaatcatgtaaatcaataaatcatgacatcacgtgagggatcaaggat 21471972  T
Q  187 gaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaacaatttaaagttcctaggagt 267  Q
    |||||| ||||||| |||||||||||||||||  ||||| | ||||||||| || ||||   |||| ||||||||||||||    
T  21471973 gaagaattgaagataaagggttcttagaaggttattgaagaaaatacaaagtgacgaaattcatttcaagttcctaggagt 21472053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 127 - 212
Target Start/End: Complemental strand, 2630474 - 2630389
Alignment:
Q  127 ttttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaaggataaaggatgaagaactgaagatcaagggttctta 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||    
T  2630474 ttttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaagaatcaaggatgaagaattgaagatcaagggttctta 2630389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 75 - 246
Target Start/End: Original strand, 7815388 - 7815559
Alignment:
Q  75 gttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtga 174  Q
    ||||||||||| |||||| | | ||||||||||  ||||||||||| || | ||||||||||| ||||||||||||||| ||||| ||||||||||||||    
T  7815388 gttgtaattcagttttattctaaatcatgcaacttcataggtgttttgagtgttttgtagtgatgaatcatgtaaatcaacaaataaagacatcatgtga 7815487  T
Q  175 aggataaaggatgaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa 246  Q
    ||||| ||||||  |||| ||||||||||  |||   |||||||  ||||| ||||||||||| ||||||||    
T  7815488 aggatcaaggatatagaattgaagatcaaaagttgacagaaggttgttgaagacaatacaaagtgaagaaaa 7815559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 70 - 179
Target Start/End: Original strand, 7142158 - 7142267
Alignment:
Q  70 gagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatca 169  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||||||  | | |||||||||||| |||||||||||||  |||||||||||||||    
T  7142158 gagtcgttgtaattcacttttatccaagatcatgcaactccataggtgttttaagtgttttgtagtgagaaatcatgtaaatcgacaaatcaagacatca 7142257  T
Q  170 tgtgaaggat 179  Q
     |||||||||    
T  7142258 cgtgaaggat 7142267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 110 - 246
Target Start/End: Original strand, 20446303 - 20446438
Alignment:
Q  110 cataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaaggataaaggatgaagaactgaagatcaagggttc 209  Q
    ||||||||||| || | |||||||||||||| | ||||||||  |||||||||||||||| ||||||||| || ||||||||| ||||||||||||||||    
T  20446303 cataggtgttttgagtgttttgtagtgaggact-atgtaaattttcaaatcaagacatcaagtgaaggatcaaagatgaagaattgaagatcaagggttc 20446401  T
Q  210 ttagaaggtgtttgaatacaatacaaagggaagaaaa 246  Q
    |||||||||  ||||| ||||||||||| ||| ||||    
T  20446402 ttagaaggttgttgaagacaatacaaagtgaaaaaaa 20446438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 70 - 246
Target Start/End: Original strand, 23124960 - 23125137
Alignment:
Q  70 gagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatca 169  Q
    ||||||||||||||||  ||||||||| ||||| |||| | |||||||||| || | |||| ||||||| |||||||||||||  | |||||||||||||    
T  23124960 gagtcgttgtaattcacatttatccaaaatcatacaactctataggtgttttgagtgttttctagtgagaaatcatgtaaatcgaccaatcaagacatca 23125059  T
Q  170 tgtgaaggataaagg--atgaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa 246  Q
    ||||||||||  |||  |||||| | ||||| |||| |||||||| ||| |  || || ||||||||||| ||||||||    
T  23125060 tgtgaaggatcgaggatatgaag-attgaagttcaatggttcttataagattcttaaagacaatacaaagtgaagaaaa 23125137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 267
Target Start/End: Original strand, 315251 - 315431
Alignment:
Q  76 ttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaa 175  Q
    |||| ||||| |||||||| |||||||||||| ||||||||||||         |||||| |||||||||||||||||   |||||||||||||||||||    
T  315251 ttgttattcagttttatcctagatcatgcaactccataggtgttt---------tgtagtaaggaatcatgtaaatca---aatcaagacatcatgtgaa 315338  T
Q  176 ggataaaggatgaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa-caatttaaagttcctaggagt 267  Q
    |||| || ||||||||  |||||| |||  |||||| ||||||  ||||| ||||||||||| ||| ||||   |||| ||||||||||||||    
T  315339 ggatcaaagatgaagagttgaagaacaacagttctttgaaggttgttgaagacaatacaaagtgaataaaattcatttcaagttcctaggagt 315431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 70 - 267
Target Start/End: Original strand, 29544579 - 29544778
Alignment:
Q  70 gagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatca 169  Q
    |||||||||||||||| |||| ||| | ||  |||||  ||||| |||||| || | |||| |||| ||||||||||||||||  |||| ||||||||||    
T  29544579 gagtcgttgtaattcacttttctcctaaattgtgcaattccataagtgttttgagtgttttttagtaaggaatcatgtaaatcgacaaaccaagacatca 29544678  T
Q  170 tgtgaaggataaagg--atgaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa-caatttaaagttcctaggag 266  Q
      |||||||| || |  |||||| | |||||||||| | |||||||||||| |||||| ||||||||||| ||||||||   |||| |||||||||||||    
T  29544679 catgaaggatcaaagatatgaag-attgaagatcaatgattcttagaaggtttttgaagacaatacaaagtgaagaaaattcatttcaagttcctaggag 29544777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 267
Target Start/End: Complemental strand, 9801928 - 9801731
Alignment:
Q  71 agtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcat 170  Q
    ||||||||||||||| |||||||| |||| ||||||  |||||||||||| || | |||  ||||||  |||||||||||||  |||||||| |||||||    
T  9801928 agtcgttgtaattcacttttatcctagattatgcaattccataggtgttttgagtttttaatagtgataaatcatgtaaatcgacaaatcaaaacatcat 9801829  T
Q  171 gtgaaggataaagg--atgaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa-caatttaaagttcctaggagt 267  Q
    ||||||||| ||||  |||||| | ||||| |||| |||||||| ||||| ||| || | ||||||||| || |||||   |||| ||||||||||||||    
T  9801828 gtgaaggatcaaggatatgaag-attgaag-tcaatggttcttaaaaggtttttaaagaaaatacaaagtgaggaaaatttatttcaagttcctaggagt 9801731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 9761469 - 9761354
Alignment:
Q  71 agtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcat 170  Q
    ||||||||||||||| |||||||| |||| ||||||  |||||||||||| || | |||  ||||||  |||||||||||||  |||||||||||||||     
T  9761469 agtcgttgtaattcacttttatcctagattatgcaattccataggtgttttgagtttttaatagtgataaatcatgtaaatcgacaaatcaagacatcac 9761370  T
Q  171 gtgaaggataaaggat 186  Q
    ||||||||| ||||||    
T  9761369 gtgaaggatcaaggat 9761354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 171
Target Start/End: Complemental strand, 7372621 - 7372519
Alignment:
Q  70 gagtcgttgtaattcaattttatc-caagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatc 168  Q
    |||||||||||||||||||||||| | | ||||||||||  |||||||||||  | | |||| ||||||| |||| ||||||||| |||||||||| |||    
T  7372621 gagtcgttgtaattcaattttatcacgaaatcatgcaacttcataggtgttttcagtgttttttagtgagaaatcttgtaaatcagcaaatcaagatatc 7372522  T
Q  169 atg 171  Q
    |||    
T  7372521 atg 7372519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 14 - 120
Target Start/End: Complemental strand, 2632547 - 2632441
Alignment:
Q  14 atgagagttagagcagttgttgaggatttaagcaaaatattatannnnnnncaattgagtcgttgtaattcaattttatccaagatcatgcaacaccata 113  Q
    ||||||||||||| ||||||||| ||||| || || ||||| ||       |||| || ||||||||||||| |||||||||||||||||||||  ||||    
T  2632547 atgagagttagaggagttgttgatgattttaggaacatattgtattattttcaatcgaatcgttgtaattcagttttatccaagatcatgcaacttcata 2632448  T
Q  114 ggtgttt 120  Q
    |||||||    
T  2632447 ggtgttt 2632441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 100 - 237
Target Start/End: Original strand, 30405685 - 30405821
Alignment:
Q  100 catgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaaggataaaggat--gaagaactgaa 197  Q
    |||||||| |||||||||||| || | ||||  |||||| |||||||||||||  ||||  |||| ||||||||||||||  |||||  |||||  ||||    
T  30405685 catgcaactccataggtgttttgagtttttt--agtgagaaatcatgtaaatcggcaaaataagaaatcatgtgaaggatcgaggatatgaagat-tgaa 30405781  T
Q  198 gatcaagggttcttagaaggtgtttgaatacaatacaaag 237  Q
    | |||| | |||||||||||| ||||||||||||||||||    
T  30405782 gttcaatgattcttagaaggtatttgaatacaatacaaag 30405821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 186
Target Start/End: Complemental strand, 1255268 - 1255152
Alignment:
Q  70 gagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatca 169  Q
    ||||| |||||||||| |||||||| | ||||||||||  ||||||||||| || | ||||||| |||  ||| || ||||||| |||||||| ||||||    
T  1255268 gagtcattgtaattcatttttatcctaaatcatgcaacttcataggtgttttgagtgttttgtaatgaaaaattatttaaatcaacaaatcaaaacatca 1255169  T
Q  170 tgtgaaggataaaggat 186  Q
      |||||||| ||||||    
T  1255168 catgaaggatcaaggat 1255152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 186
Target Start/End: Complemental strand, 20461702 - 20461587
Alignment:
Q  70 gagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatca 169  Q
    |||||||||||| ||||||| |||| | |||| ||||||  |||||||||| || | |||| ||||||| |||||||||||||  ||||  |||||||||    
T  20461702 gagtcgttgtaactcaatttcatcctaaatcacgcaacatgataggtgtttcgagtctttt-tagtgagaaatcatgtaaatcggcaaaataagacatca 20461604  T
Q  170 tgtgaaggataaaggat 186  Q
     ||||||||| ||||||    
T  20461603 agtgaaggatcaaggat 20461587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 69 - 169
Target Start/End: Complemental strand, 24597059 - 24596960
Alignment:
Q  69 tgagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatc 168  Q
    |||||||||||||||||||||||||| | |||||||||| || |||||||||  | | |||| ||||||| |||| ||||||||  |||| |||||||||    
T  24597059 tgagtcgttgtaattcaattttatcctaaatcatgcaactccgtaggtgttttaagtctttt-tagtgagaaatcgtgtaaatcggcaaaacaagacatc 24596961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 68 - 235
Target Start/End: Complemental strand, 5312842 - 5312675
Alignment:
Q  68 ttgagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacat 167  Q
    |||||||||||||||||| |||||||  | | |||||||| |||||||||||| || | |||| ||||||  |||||||||||||  ||||   | ||||    
T  5312842 ttgagtcgttgtaattcacttttatcttatagcatgcaactccataggtgttttgagtctttt-tagtgataaatcatgtaaatcggcaaaaataaacat 5312744  T
Q  168 catgtgaaggataaaggat-gaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaa 235  Q
    || ||||||||| ||||||   || | |||| || || |||||||||||| | |||||| |||||||||    
T  5312743 caagtgaaggatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaatacaa 5312675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 236
Target Start/End: Complemental strand, 8309088 - 8308924
Alignment:
Q  68 ttgagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacat 167  Q
    ||||||| |||| ||| | |||||||| | |||||||||| |||||  ||||| || | |||| |||| || |||||||||||||| |||| ||||||||    
T  8309088 ttgagtcattgtgatttagttttatcctaaatcatgcaactccatacatgttttgagtctttt-tagtaagaaatcatgtaaatcagcaaaacaagacat 8308990  T
Q  168 catgtgaaggataaaggatgaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaa 236  Q
    || |||||| || |||| |   |   || | ||||| |||||||||||||| |||||| ||||||||||    
T  8308989 cacgtgaagaatcaaggttatgg---tggaaatcaatggttcttagaaggtctttgaagacaatacaaa 8308924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 9066198 - 9066239
Alignment:
Q  78 gtaattcaattttatccaagatcatgcaacaccataggtgtt 119  Q
    |||||||| |||||||||||||||||||||||| ||||||||    
T  9066198 gtaattcacttttatccaagatcatgcaacaccgtaggtgtt 9066239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 232
Target Start/End: Complemental strand, 12358818 - 12358655
Alignment:
Q  68 ttgagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacat 167  Q
    |||||||||||||||||| |||||||| | ||||| ||||  ||||||||||| || | |||| ||||||| ||| || ||||||   ||| ||| | ||    
T  12358818 ttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgttttgagtctttt-tagtgagaaataatataaatcggaaaagcaaaatat 12358720  T
Q  168 catgtgaaggataaagg--atgaagaactgaagatcaagggttcttagaaggtgtttgaatacaata 232  Q
    | | |||| ||| ||||  |||||| | |||||||||| |||||||||||||| |||||| ||||||    
T  12358719 cttatgaa-gatcaaggatatgaag-attgaagatcaatggttcttagaaggtttttgaagacaata 12358655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 246
Target Start/End: Complemental strand, 21545789 - 21545705
Alignment:
Q  163 gacatcatgtgaaggataaaggat--gaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa 246  Q
    ||||||| ||||||||| ||||||  |||||  |||||||||| ||||||||||| || |||||| |||||| |||| ||||||||    
T  21545789 gacatcacgtgaaggatcaaggatatgaagat-tgaagatcaatggttcttagaaagtatttgaagacaataaaaagtgaagaaaa 21545705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 7778026 - 7777985
Alignment:
Q  138 ggaatcatgtaaatcatcaaatcaagacatcatgtgaaggat 179  Q
    |||||||||||||||| |||| |||||||||| |||||||||    
T  7778026 ggaatcatgtaaatcaacaaagcaagacatcacgtgaaggat 7777985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 9755910 - 9755962
Alignment:
Q  127 ttttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaaggat 179  Q
    |||| ||||||| ||||||| |||||  |||||| ||||||||||||||||||    
T  9755910 ttttctagtgagaaatcatgcaaatcgacaaatctagacatcatgtgaaggat 9755962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 267
Target Start/End: Original strand, 20017143 - 20017211
Alignment:
Q  200 tcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa-caatttaaagttcctaggagt 267  Q
    |||| ||||||||||||||  ||||| ||||||||||| ||||||||   |||| ||||||||||||||    
T  20017143 tcaatggttcttagaaggttcttgaagacaatacaaagtgaagaaaattcatttcaagttcctaggagt 20017211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 123; Significance: 4e-63; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 30781761 - 30781996
Alignment:
Q  11 aagatgagagttagagcagttgttgaggatttaagcaaaatattatannnnnnncaattgagtcgttgtaattcaattttatccaagatcatgcaacacc 110  Q
    |||||||||||||||| |||||||||  |||| || || ||||| ||       |||| ||| | |||||||||| |||||||||||||||| |||| ||    
T  30781761 aagatgagagttagaggagttgttgataattttagaaatatattgtattgttttcaatcgagacattgtaattcagttttatccaagatcatacaactcc 30781860  T
Q  111 ataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaaggataaaggatgaagaactgaagatcaagggttct 210  Q
    |||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  30781861 ataggtgttttgagtgttttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaaggatcaaggatgaagaattgaagatcaagggttct 30781960  T
Q  211 tagaaggtgtttgaatacaatacaaagggaagaaaa 246  Q
    || |||||  ||||| ||||||||||| ||||||||    
T  30781961 taaaaggttgttgaagacaatacaaagtgaagaaaa 30781996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 68 - 212
Target Start/End: Complemental strand, 8247714 - 8247570
Alignment:
Q  68 ttgagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacat 167  Q
    ||||||| ||||||||   ||||| || |||||||||||| |||||||||||| || | ||||||||||||||||||||||||||| |||||||||||||    
T  8247714 ttgagtcattgtaattttgttttaccctagatcatgcaactccataggtgttttgagtgttttgtagtgaggaatcatgtaaatcaacaaatcaagacat 8247615  T
Q  168 catgtgaaggataaaggatgaagaactgaagatcaagggttctta 212  Q
    || ||||| ||| |||||||||||| ||| |||||||||||||||    
T  8247614 cacgtgaaagatcaaggatgaagaattgaggatcaagggttctta 8247570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 70 - 267
Target Start/End: Complemental strand, 12423969 - 12423771
Alignment:
Q  70 gagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatca 169  Q
    ||||| |||||||||| |||||||  |||||||||||| ||||| |||||| ||   || |||||| |||||||   |||||||||||||||| ||| ||    
T  12423969 gagtcattgtaattcagttttatcttagatcatgcaactccatatgtgttttgagatttctgtagtaaggaatcgcataaatcatcaaatcaaaacacca 12423870  T
Q  170 tgtgaaggataaaggatgaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaa-gaaaacaatttaaagttcctaggagt 267  Q
    ||||| |||| |||||||||||| |||||||||| ||||||||||||||  ||||| ||||||||||| ||| ||||   |||| ||||||||||||||    
T  12423869 tgtgacggatcaaggatgaagaattgaagatcaaaggttcttagaaggttgttgaagacaatacaaagtgaaggaaattcatttcaagttcctaggagt 12423771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 73 - 245
Target Start/End: Complemental strand, 25727961 - 25727788
Alignment:
Q  73 tcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgt 172  Q
    ||||||||||||| |||||||| | |||||||||| | |||||||||| || | |||||||||||| |||||||||||||  |||||||| | ||||  |    
T  25727961 tcgttgtaattcacttttatcctaaatcatgcaactcaataggtgttttgagtgttttgtagtgagaaatcatgtaaatcgacaaatcaatatatcacat 25727862  T
Q  173 gaaggataaagg--atgaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaa 245  Q
    ||||||| ||||  |||||| | |||||||||| ||||||| |||||| |||||| ||||| ||||| |||||||    
T  25727861 gaaggattaaggatatgaag-attgaagatcaatggttcttggaaggtttttgaagacaatccaaagtgaagaaa 25727788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 73 - 245
Target Start/End: Complemental strand, 25736369 - 25736196
Alignment:
Q  73 tcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgt 172  Q
    ||||||||||||| |||||||| | |||||||||| | |||||||||| || | |||||||||||| |||||||||||||  |||||||| | ||||  |    
T  25736369 tcgttgtaattcacttttatcctaaatcatgcaactcaataggtgttttgagtgttttgtagtgagaaatcatgtaaatcgacaaatcaatatatcacat 25736270  T
Q  173 gaaggataaagg--atgaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaa 245  Q
    ||||||| ||||  |||||| | |||||||||| ||||||| |||||| |||||| ||||| ||||| |||||||    
T  25736269 gaaggattaaggatatgaag-attgaagatcaatggttcttggaaggtttttgaagacaatccaaagtgaagaaa 25736196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 70 - 267
Target Start/End: Original strand, 30675544 - 30675742
Alignment:
Q  70 gagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatca 169  Q
    ||||||||||||| || |||| ||| | |||||||||| |||||||||||| || | |||| ||||||| |||||||||||||  ||| | |||||||||    
T  30675544 gagtcgttgtaatacacttttgtcctatatcatgcaactccataggtgttttgagtgttttatagtgagaaatcatgtaaatcggcaatttaagacatca 30675643  T
Q  170 tgtgaaggataaagga--tgaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa-caatttaaagttcctaggag 266  Q
    |||||||||| ||| |  ||||| | |||| ||||| |||||||||||||| |||||| | ||||||||| ||||||||   |||| |||||||||||||    
T  30675644 tgtgaaggatcaagaatgtgaag-attgaa-atcaatggttcttagaaggtttttgaagataatacaaagtgaagaaaattcatttcaagttcctaggag 30675741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 73 - 267
Target Start/End: Original strand, 26657539 - 26657734
Alignment:
Q  73 tcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgt 172  Q
    ||||||||||||| |||||||| |||||| ||||| |||||||||||| || | |||||||||||  |||||||||||||  ||||||||||||| | ||    
T  26657539 tcgttgtaattcacttttatcctagatcacgcaactccataggtgttttgagtgttttgtagtgaaaaatcatgtaaatcgacaaatcaagacattaggt 26657638  T
Q  173 gaaggataaagg--atgaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa-caatttaaagttcctaggagt 267  Q
    ||||||| ||||  ||||| ||  |||| ||||  ||||||| ||||| |||||| |||| |||||| ||||||||   |||| ||||||||||||||    
T  26657639 gaaggatcaaggctatgaa-aatcgaag-tcaatagttcttataaggtttttgaagacaaaacaaagtgaagaaaattcatttcaagttcctaggagt 26657734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 71 - 246
Target Start/End: Complemental strand, 18301057 - 18300881
Alignment:
Q  71 agtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcat 170  Q
    ||||||||||||| | ||||||| || ||||||||||  ||||||||||| || | ||||  ||||| |||||||||||||   |||||||||||||||     
T  18301057 agtcgttgtaattgacttttatcgaaaatcatgcaacttcataggtgttttgagtgttttaaagtgatgaatcatgtaaatagacaaatcaagacatcac 18300958  T
Q  171 gtgaaggataaagg--atgaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa 246  Q
    ||||||||| ||||  |||||| | | || | ||| |||||||||||||| |||||| |||||||| || ||||||||    
T  18300957 gtgaaggatcaaggatatgaag-attaaataccaatggttcttagaaggtttttgaagacaatacagagtgaagaaaa 18300881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 72 - 246
Target Start/End: Complemental strand, 11770047 - 11769872
Alignment:
Q  72 gtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatg 171  Q
    |||||||||||||| |||||||| | |||||| |||  ||| ||||| | || | ||||| |||||| |||||||||||||   ||||||||||||||      
T  11770047 gtcgttgtaattcacttttatcctaaatcatgaaacttcatgggtgtgttgagtgttttgcagtgagaaatcatgtaaatcgaaaaatcaagacatcaca 11769948  T
Q  172 tgaaggataaagg--atgaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa 246  Q
    |||| ||| || |  |||||| | |||||| ||| |||||||||||||| |||||| ||||||||||| ||||||||    
T  11769947 tgaatgatcaaagatatgaag-attgaagaccaatggttcttagaaggtttttgaagacaatacaaagtgaagaaaa 11769872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 80 - 263
Target Start/End: Complemental strand, 25730616 - 25730432
Alignment:
Q  80 aattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaaggat 179  Q
    ||||||||||||||| | ||||||||||  || |||||||| || | |||||||| ||| |||||||||||||  |||||||||| ||||  ||||||||    
T  25730616 aattcaattttatcctaaatcatgcaacttcacaggtgttttgagtgttttgtagcgagaaatcatgtaaatcgacaaatcaagatatcacatgaaggat 25730517  T
Q  180 aaag--gatgaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaacaatttaaagttcctag 263  Q
     |||  ||||||| | | |||||||| ||||||| |||||| |||||  |||||  |||| ||||||||   |||||| |||||||    
T  25730516 caaggagatgaag-atttaagatcaatggttcttggaaggtttttgacgacaatcgaaagtgaagaaaattctttaaaattcctag 25730432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 246
Target Start/End: Complemental strand, 25494486 - 25494367
Alignment:
Q  127 ttttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaaggataaagg-atgaagaactgaagatcaagggttcttagaaggtgtttgaa 225  Q
    |||||||||||| |||||||||||||  |||||||||||||||  | |||||  |||  |||||||  |||||| ||| |||||||||||||| ||||||    
T  25494486 ttttgtagtgagaaatcatgtaaatcgacaaatcaagacatcacattaaggagcaagatatgaagat-tgaagaccaatggttcttagaaggtttttgaa 25494388  T
Q  226 tacaatacaaagggaagaaaa 246  Q
     ||||||||||| ||||||||    
T  25494387 gacaatacaaagtgaagaaaa 25494367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 235
Target Start/End: Original strand, 26102117 - 26102282
Alignment:
Q  70 gagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatca 169  Q
    |||| ||||||||||| |||||||| | |||||||||| |||| ||||||| || | |||| |||||||  ||| || |||||  |||| ||||||||||    
T  26102117 gagttgttgtaattcacttttatcctaaatcatgcaactccatgggtgttttgagtctttt-tagtgagatatcgtgcaaatcgacaaaacaagacatca 26102215  T
Q  170 tgtgaaggataaagg--atgaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaa 235  Q
     ||||| ||| ||||  |||||||| |||||||||| | || ||||||||| |||||| |||||||||    
T  26102216 cgtgaatgatcaaggatatgaagaa-tgaagatcaatgatttttagaaggtttttgaagacaatacaa 26102282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 73 - 168
Target Start/End: Original strand, 23223475 - 23223570
Alignment:
Q  73 tcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatc 168  Q
    ||||||||||| | |||||||| | |||||||||| ||| ||||||||  | | |||||||||||| |||||||||||||| ||| ||||||||||    
T  23223475 tcgttgtaatttacttttatcctaaatcatgcaactccaaaggtgtttttaatgttttgtagtgagaaatcatgtaaatcaacaagtcaagacatc 23223570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 71 - 235
Target Start/End: Original strand, 31313613 - 31313777
Alignment:
Q  71 agtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcat 170  Q
    ||||||||||||||| |||||||| | ||||||||||  ||||||||||| || | |||| |||| || ||||||||||||    ||| ||| ||||||     
T  31313613 agtcgttgtaattcacttttatcctaaatcatgcaacttcataggtgttttgagt-ttttttagtaagaaatcatgtaaattggaaaaacaatacatcac 31313711  T
Q  171 gtgaaggataaag--gatgaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaa 235  Q
    ||||||||| |||   |||||||| |||||||||| | |||||| ||||| |||||| |||||||||    
T  31313712 gtgaaggattaagaatatgaagaa-tgaagatcaatgattcttataaggtttttgaagacaatacaa 31313777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 127 - 267
Target Start/End: Complemental strand, 23519766 - 23519625
Alignment:
Q  127 ttttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaaggataaaggatgaagaactgaagatcaagggttcttagaaggtgtttgaat 226  Q
    |||||||||||| |||||||||||||  || |||||||||| | ||||||||| ||| ||    || |||||| ||| ||||||||||||||  |||||     
T  23519766 ttttgtagtgagaaatcatgtaaatcgacacatcaagacattacgtgaaggatcaagaatatgaaattgaagaccaatggttcttagaaggttgttgaag 23519667  T
Q  227 acaatacaaagggaagaaaa-caatttaaagttcctaggagt 267  Q
    |||||| |||| ||||||||   |||| ||||||||||||||    
T  23519666 acaatagaaagtgaagaaaatttatttcaagttcctaggagt 23519625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 151
Target Start/End: Original strand, 18391140 - 18391222
Alignment:
Q  68 ttgagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaat 151  Q
    |||||||||||||||| | |||||||| |||||||||||  ||||||| ||||||| |||||| |||  || ||||||||||||    
T  18391140 ttgagtcgttgtaattaacttttatcctagatcatgcaattccataggcgtttagagtatttt-taggaagaaatcatgtaaat 18391222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 246
Target Start/End: Complemental strand, 19257857 - 19257684
Alignment:
Q  71 agtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcat 170  Q
    |||| ||||||||| ||||||||| | |||||||||  || ||||||||| || |||||| ||||||| |||| |||||||   || | ||||||||||     
T  19257857 agtcattgtaattcgattttatcctaaatcatgcaagtccttaggtgttttgagtatttt-tagtgagaaatcgtgtaaattggcataacaagacatcac 19257759  T
Q  171 gtgaaggataaaggat--gaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa 246  Q
     |||| |||  |||||  |||||  |||| ||||||  |||||||||||| |||||| ||||||||||| ||||||||    
T  19257758 atgaaagatcgaggatatgaagat-tgaacatcaag--ttcttagaaggtctttgaagacaatacaaagtgaagaaaa 19257684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 218
Target Start/End: Complemental strand, 23521727 - 23521636
Alignment:
Q  127 ttttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaaggataaaggatgaagaactgaagatcaagggttcttagaaggt 218  Q
    |||||||||||| |||||||||||||  || |||||||||||| ||||||||||| | ||    || |||||| ||| ||||||||||||||    
T  23521727 ttttgtagtgagaaatcatgtaaatcgacacatcaagacatcacgtgaaggataaggaatatgaaattgaagaccaatggttcttagaaggt 23521636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 246
Target Start/End: Complemental strand, 26854371 - 26854198
Alignment:
Q  71 agtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcat 170  Q
    |||||||||||||||||||||||| |  |||| ||||  ||||| ||||| || | |||| ||| ||  ||||||||||| |  |||| |||||||| |     
T  26854371 agtcgttgtaattcaattttatcctaattcatacaacttcatagatgttttgagtctttt-tagaga--aatcatgtaaaccggcaaaacaagacattaa 26854275  T
Q  171 gtgaaggataaaggat--gaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa 246  Q
    ||||||||| || |||  |||||  ||||| |||| |||||||||||| | |||||| ||||||||||| ||||||||    
T  26854274 gtgaaggatcaatgatatgaagat-tgaagttcaatggttcttagaagatatttgaagacaatacaaagtgaagaaaa 26854198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 70 - 186
Target Start/End: Original strand, 34381768 - 34381886
Alignment:
Q  70 gagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttg--tagtgaggaatcatgtaaatcatcaaatcaagacat 167  Q
    |||||||||||||||| || ||| | | |||| |||||  ||||||||||| || |||||||  ||||||  ||| |||||||||  |||||||| ||||    
T  34381768 gagtcgttgtaattcacttctattctaaatcacgcaacttcataggtgttttgagtattttgtatagtgaaaaataatgtaaatcgacaaatcaaaacat 34381867  T
Q  168 catgtgaaggataaaggat 186  Q
    || ||||| ||| ||||||    
T  34381868 cacgtgaaagatcaaggat 34381886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 246
Target Start/End: Complemental strand, 52271298 - 52271123
Alignment:
Q  71 agtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcat 170  Q
    ||||||||| ||||| |||  ||| | || ||||||| |||||| ||||| || | |||| ||||||| ||| |||||||||  |||| ||| ||  ||     
T  52271298 agtcgttgtcattcactttattcctaaattatgcaactccatagatgttttgagtctttt-tagtgagaaattatgtaaatcggcaaaacaaaacgccac 52271200  T
Q  171 gtgaaggataaaggat--gaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa 246  Q
    |||||||||  |||||  |||||  ||||| |||| ||| |||||||||| |||||| ||||||||||| ||||||||    
T  52271199 gtgaaggatcgaggatatgaagat-tgaagttcaatggtacttagaaggtatttgaagacaatacaaagtgaagaaaa 52271123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 70 - 267
Target Start/End: Complemental strand, 16593805 - 16593607
Alignment:
Q  70 gagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatca 169  Q
    |||| ||| ||||||| |||||||| |||||||||||| |||||||||||  || | ||||||||||| |||||||||||||||||||||||||||||||    
T  16593805 gagttgttttaattcagttttatcctagatcatgcaactccataggtgttctgagtgttttgtagtgaagaatcatgtaaatcatcaaatcaagacatca 16593706  T
Q  170 tgtgaaggataaaggatgaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa-caatttaaagttcctaggagt 267  Q
    | |||||||| || ||||||||| |||||||||||||||||||||||||  ||||| ||||||||||| ||||||||   |||| ||||||||||||||    
T  16593705 tttgaaggatcaacgatgaagaaatgaagatcaagggttcttagaaggttgttgaagacaatacaaagtgaagaaaattcatttcaagttcctaggagt 16593607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 77 - 246
Target Start/End: Original strand, 25474104 - 25474273
Alignment:
Q  77 tgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaag 176  Q
    ||||||||| | |||||| |||||||||||| ||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25474104 tgtaattcagtattatcctagatcatgcaactccaaaggtgttttgactgttttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaag 25474203  T
Q  177 gataaaggatgaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa 246  Q
     || ||||||| |||| ||||| |||||||||||||||||||  ||||| |||||| |||| ||||||||    
T  25474204 aatcaaggatgtagaattgaaggtcaagggttcttagaaggttgttgaagacaatataaagtgaagaaaa 25474273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 110 - 236
Target Start/End: Original strand, 35707903 - 35708029
Alignment:
Q  110 cataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaaggataaaggatgaagaactgaagatcaagggttc 209  Q
    ||||||||||| || | |||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||| |||| ||||||| |||    
T  35707903 cataggtgttttgagtgttttgtagtgaggaatcatgtaaatcataaaatcaagacatcatgtgaagtatcaaggatgaagaattgaatatcaaggtttc 35708002  T
Q  210 ttagaaggtgtttgaatacaatacaaa 236  Q
    |||||||||  ||||| ||||||||||    
T  35708003 ttagaaggttgttgaagacaatacaaa 35708029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 68 - 246
Target Start/End: Original strand, 30998829 - 30999007
Alignment:
Q  68 ttgagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacat 167  Q
    ||||||||||||| |||| |||||||| ||||||| |||| |||||||||||| || | ||||||||||| || | |||||||||  |||||||||| ||    
T  30998829 ttgagtcgttgtacttcagttttatcctagatcatacaactccataggtgttttgagtgttttgtagtgaagagtgatgtaaatcgacaaatcaagatat 30998928  T
Q  168 catgtgaaggataaaggatgaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa 246  Q
    || ||||||||| ||||||    || |||||||||||||||||||||||||  ||||| ||||||||||| | ||||||    
T  30998929 caagtgaaggatcaaggatatgtaattgaagatcaagggttcttagaaggttgttgaagacaatacaaagtggagaaaa 30999007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 127 - 246
Target Start/End: Original strand, 1733208 - 1733327
Alignment:
Q  127 ttttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaaggataaaggatgaagaactgaagatcaagggttcttagaaggtgtttgaat 226  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||| ||||||||||| |||||||||| ||  |||||     
T  1733208 ttttgtagtgaggaatcatgtaaatcatcaaagcaagacatcacgtgaaggattaaggatgaagaaatgaagatcaagagttcttagaatgttgttgaag 1733307  T
Q  227 acaatacaaagggaagaaaa 246  Q
    | ||||||||| ||| ||||    
T  1733308 ataatacaaagtgaataaaa 1733327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 68 - 246
Target Start/End: Complemental strand, 19949611 - 19949435
Alignment:
Q  68 ttgagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacat 167  Q
    |||||||||||||||  | ||||||   |||| ||| ||| |||||||||||| || | ||||||||| |||||||||||| || |||||||||| ||||    
T  19949611 ttgagtcgttgtaatatagttttattatagataatgaaactccataggtgttttgagtgttttgtagtaaggaatcatgtagattatcaaatcaaaacat 19949512  T
Q  168 catgtgaaggataaaggatgaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa 246  Q
    |||||||||||| |||||||||||| |  |||||||||||||  | |||||  ||||| ||||||||||| ||||||||    
T  19949511 catgtgaaggatcaaggatgaagaagtagagatcaagggttc--aaaaggttattgaagacaatacaaagtgaagaaaa 19949435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 87 - 246
Target Start/End: Complemental strand, 27417301 - 27417141
Alignment:
Q  87 ttttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaaggataaaggat 186  Q
    |||||||| | |||||||||| ||||||||||||  | | |||||||||||| |||||||||||||  |||||||||||||||  |||||||| || |||    
T  27417301 ttttatcctaaatcatgcaactccataggtgttttaagtgttttgtagtgagaaatcatgtaaatcgacaaatcaagacatcacatgaaggatcaatgat 27417202  T
Q  187 gaagaa--ctgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa 246  Q
     | |||   |||||| ||| |||||| ||||||| |||||| ||||||||||| ||||||||    
T  27417201 -atgaatgttgaagaccaatggttctaagaaggtttttgaaaacaatacaaagtgaagaaaa 27417141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 68 - 185
Target Start/End: Complemental strand, 27918040 - 27917923
Alignment:
Q  68 ttgagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacat 167  Q
    |||||||||||||||||| |||||| | | |||||||||| |||||||||||| ||||||| | |||| || |||||||| ||||  |||||||||||||    
T  27918040 ttgagtcgttgtaattcacttttatactaaatcatgcaactccataggtgttttgactattctatagtaagaaatcatgtcaatcgacaaatcaagacat 27917941  T
Q  168 catgtgaaggataaagga 185  Q
    ||  |||||||| |||||    
T  27917940 cagatgaaggatcaagga 27917923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 179
Target Start/End: Original strand, 19541092 - 19541205
Alignment:
Q  65 caattgagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaaga 164  Q
    |||| ||||| |||||||||| |||||||| | |||||||||| |||||||||||| || |  ||| ||||||| |||||||||||||  ||||  ||||    
T  19541092 caatcgagtcattgtaattcagttttatcctaaatcatgcaactccataggtgttttgagt-ctttctagtgagaaatcatgtaaatcggcaaaataaga 19541190  T
Q  165 catcatgtgaaggat 179  Q
    ||||| |||||||||    
T  19541191 catcaagtgaaggat 19541205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 71 - 184
Target Start/End: Original strand, 39730508 - 39730620
Alignment:
Q  71 agtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcat 170  Q
    ||||||||||||||| |||||||| | |||||||||| |   |||||||| || |||||| ||||||| |||||| ||||||| |||| ||||||||||     
T  39730508 agtcgttgtaattcacttttatcctaaatcatgcaactctgcaggtgttttgagtatttt-tagtgagaaatcatataaatcagcaaaacaagacatcac 39730606  T
Q  171 gtgaaggataaagg 184  Q
     |||||||| ||||    
T  39730607 atgaaggatcaagg 39730620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 235
Target Start/End: Original strand, 17152213 - 17152379
Alignment:
Q  70 gagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatca 169  Q
    |||||||||||||| | |||||||  |  ||||||||| |  || |||||| || | |||| |||| || |||||||||||||  |||| |||||||||     
T  17152213 gagtcgttgtaattaacttttatcgtaattcatgcaactctgtaagtgttttgagttttttttagtaagaaatcatgtaaatcggcaaaacaagacatcg 17152312  T
Q  170 tgtgaaggataaagg--atgaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaa 235  Q
    |||||||||| ||||  |||||||| |||| || || |||||||||||||| |||||| | |||||||    
T  17152313 tgtgaaggatcaaggatatgaagaa-tgaatatgaatggttcttagaaggtttttgaagataatacaa 17152379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 178
Target Start/End: Original strand, 35031762 - 35031870
Alignment:
Q  70 gagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatca 169  Q
    |||||||||||| | | |||||||| |||||||||||  |||||||||||| || | ||||||||| ||||||||| |||||   |||||||||| ||||    
T  35031762 gagtcgttgtaacttacttttatcctagatcatgcaattccataggtgttttgagtgttttgtagtcaggaatcatataaatatacaaatcaagatatca 35031861  T
Q  170 tgtgaagga 178  Q
      |||||||    
T  35031862 catgaagga 35031870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 68 - 162
Target Start/End: Complemental strand, 28278480 - 28278386
Alignment:
Q  68 ttgagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaa 162  Q
    |||||||||||||||||| |||||||| |||||||||||| |||||| | |||  | | |||||| || || || ||||||||||| ||||||||    
T  28278480 ttgagtcgttgtaattcacttttatcctagatcatgcaactccatagatattttaagtgttttgtggtaagaaagcatgtaaatcaacaaatcaa 28278386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 246
Target Start/End: Original strand, 18818821 - 18818938
Alignment:
Q  135 tgaggaatcatgtaaatcatcaaatcaagacatcatgtgaaggataaaggat--ga----agaactgaagatcaagggttcttagaaggtgtttgaatac 228  Q
    |||| |||||||||||||  |||| |||| ||||| ||||||||| ||||||  ||    | |||||||||| || |||||||||||||| |||||| ||    
T  18818821 tgagaaatcatgtaaatcggcaaaacaaggcatcacgtgaaggattaaggataggatatgaaaactgaagattaatggttcttagaaggtctttgaagac 18818920  T
Q  229 aatacaaagggaagaaaa 246  Q
    ||||||||| ||||||||    
T  18818921 aatacaaagtgaagaaaa 18818938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 70 - 235
Target Start/End: Complemental strand, 21505194 - 21505028
Alignment:
Q  70 gagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatca 169  Q
    ||||| || ||||| | |||||||| | ||||||||||  | ||| ||||| || | ||||||||||||||||||||||||||   |||| |||||||||    
T  21505194 gagtctttataatttacttttatcctaaatcatgcaacttcttagatgttttgagtgttttgtagtgaggaatcatgtaaatcgataaattaagacatca 21505095  T
Q  170 tgtgaaggataaagga--tgaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaa 235  Q
      |||| ||| |||||  |||||   |||||| ||| |||||| ||||||| |||||| |||||||||    
T  21505094 catgaaagatcaaggatgtgaag-tttgaagaccaatggttctgagaaggtttttgaagacaatacaa 21505028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 15829238 - 15829290
Alignment:
Q  127 ttttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaaggat 179  Q
    ||||| |||||| |||||||||||||  ||||||||||||||| |||||||||    
T  15829238 ttttgcagtgagaaatcatgtaaatcgacaaatcaagacatcacgtgaaggat 15829290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 22511062 - 22511110
Alignment:
Q  127 ttttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaa 175  Q
    |||||||||||| |||||||||||||   |||||||||||||| |||||    
T  22511062 ttttgtagtgagaaatcatgtaaatcgaaaaatcaagacatcaagtgaa 22511110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 24188074 - 24188138
Alignment:
Q  115 gtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaaggat 179  Q
    |||||| || |||||||||||||| |||||||||||||  | ||||||| |||||  ||||||||    
T  24188074 gtgttttgagtattttgtagtgagaaatcatgtaaatcgaccaatcaaggcatcacatgaaggat 24188138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 8e-52; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 73 - 267
Target Start/End: Original strand, 25883166 - 25883361
Alignment:
Q  73 tcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgt 172  Q
    ||||||||||||| |||||||| |||| |||||||  ||||||||||| || | |||| ||||||||||||||||| ||||||||||||||||||| |||    
T  25883166 tcgttgtaattcagttttatcctagattatgcaactacataggtgttttgagtgttttatagtgaggaatcatgtacatcatcaaatcaagacatcttgt 25883265  T
Q  173 gaaggataaaggatgaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa-caatttaaagttcctaggagt 267  Q
     |||||| |||||||||||| |||||||||||||||||||||||||  ||||| ||||||||||| ||||||||   |||| ||||||||||||||    
T  25883266 taaggatcaaggatgaagaattgaagatcaagggttcttagaaggttgttgaagacaatacaaagtgaagaaaattcatttcaagttcctaggagt 25883361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 70 - 267
Target Start/End: Complemental strand, 1475335 - 1475136
Alignment:
Q  70 gagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgt-ttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatc 168  Q
    ||||||||||||||||||| ||||| |||||||||||| |||| ||| | || || | ||| ||||||| |||| |||||||||||||||||||||||||    
T  1475335 gagtcgttgtaattcaattatatcctagatcatgcaactccatgggtatatttgagtgtttcgtagtgaagaataatgtaaatcatcaaatcaagacatc 1475236  T
Q  169 atgtgaaggataaaggatgaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa-caatttaaagttcctaggagt 267  Q
    ||||||||||| |||||||||||  ||||||||||| |||||||||||||  ||||| | ||||||||| ||||||||   |||| ||||||||||||||    
T  1475235 atgtgaaggatcaaggatgaagagttgaagatcaagagttcttagaaggttattgaagataatacaaagtgaagaaaatttatttcaagttcctaggagt 1475136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 70 - 246
Target Start/End: Complemental strand, 19219266 - 19219089
Alignment:
Q  70 gagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatca 169  Q
    |||||||||||||||| |||||||||| ||||||||||||||||  ||||| || | |||||||||||||||||||||||||| ||||| ||||||||||    
T  19219266 gagtcgttgtaattcacttttatccaaaatcatgcaacaccataaatgttttgagtgttttgtagtgaggaatcatgtaaatcttcaaaccaagacatca 19219167  T
Q  170 tgtgaaggataaagg--atgaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa 246  Q
      |||||||| ||||  |||||| | |||||||||| |||||||||||||| |||||| ||||||||||| ||| ||||    
T  19219166 catgaaggatcaaggatatgaag-attgaagatcaatggttcttagaaggtttttgaagacaatacaaagtgaataaaa 19219089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 74 - 246
Target Start/End: Original strand, 12573354 - 12573526
Alignment:
Q  74 cgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtg 173  Q
    |||||||||||| |||||||| |||||||||| | || ||||| |||  | | ||||||||||||||||||||||||||| ||||| ||||||| | |||    
T  12573354 cgttgtaattcatttttatcctagatcatgcagctccgtaggtttttttagtgttttgtagtgaggaatcatgtaaatcaacaaatgaagacattacgtg 12573453  T
Q  174 aaggataaaggatgaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa 246  Q
    |||||| |   |||||||| |||||||||||| || |||||||||  ||||| |||||||| || ||||||||    
T  12573454 aaggatcaccaatgaagaattgaagatcaaggtttgttagaaggttgttgaagacaatacacagtgaagaaaa 12573526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 74 - 246
Target Start/End: Original strand, 13549818 - 13549990
Alignment:
Q  74 cgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtg 173  Q
    |||||||||||| |||||||| |||||||||| | || ||||| |||  | | ||||||||||||||||||||||||||| ||||| ||||||| | |||    
T  13549818 cgttgtaattcatttttatcctagatcatgcagctccgtaggtttttttagtgttttgtagtgaggaatcatgtaaatcaacaaatgaagacattacgtg 13549917  T
Q  174 aaggataaaggatgaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa 246  Q
    |||||| |   |||||||| |||||||||||| || |||||||||  ||||| |||||||| || ||||||||    
T  13549918 aaggatcaccaatgaagaattgaagatcaaggtttgttagaaggttgttgaagacaatacacagtgaagaaaa 13549990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 71 - 267
Target Start/End: Original strand, 10341856 - 10342045
Alignment:
Q  71 agtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcat 170  Q
    ||||||||||||||| |||||| ||| |||||||||| ||||||||||||         ||| ||||| |||||||||||||| |||||| | ||||||     
T  10341856 agtcgttgtaattcacttttattcaaaatcatgcaactccataggtgttt---------tgttgtgagaaatcatgtaaatcaacaaatccaaacatcaa 10341946  T
Q  171 gtgaaggataaaggat-gaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaac-aatttaaagttcctaggagt 267  Q
    ||||||||| |||||| |||  | |||||||||  |||||||||||||| |||||| ||||||||||| ||  |||||  |||| ||||||||||||||    
T  10341947 gtgaaggattaaggatagaaagattgaagatcagtggttcttagaaggtttttgaagacaatacaaagtgagaaaaactcatttcaagttcctaggagt 10342045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 77 - 208
Target Start/End: Original strand, 11521206 - 11521337
Alignment:
Q  77 tgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaag 176  Q
    ||||||||| |||||||| |||||||||||  |||||| ||||| || | ||||||||||||||||||||||||||| |||||||| |||| | ||| ||    
T  11521206 tgtaattcagttttatcctagatcatgcaagtccatagttgttttgagtgttttgtagtgaggaatcatgtaaatcaacaaatcaaaacattacgtggag 11521305  T
Q  177 gataaaggatgaagaactgaagatcaagggtt 208  Q
    ||| ||  |||||||   || |||||||||||    
T  11521306 gatcaacaatgaagagtagaggatcaagggtt 11521337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 70 - 179
Target Start/End: Original strand, 21017937 - 21018046
Alignment:
Q  70 gagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatca 169  Q
    |||||||||||||||| |||||||| |||||||||||| | | | |||||| || | ||||||| |||| |||||||||| ||| ||||||||||||| |    
T  21017937 gagtcgttgtaattcagttttatcctagatcatgcaactctaaatgtgttttgagtgttttgtattgagaaatcatgtaattcaacaaatcaagacatta 21018036  T
Q  170 tgtgaaggat 179  Q
     |||||||||    
T  21018037 cgtgaaggat 21018046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 235
Target Start/End: Original strand, 16970566 - 16970687
Alignment:
Q  115 gtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaaggataaagg--atgaagaactgaagatcaagggttctta 212  Q
    ||||||||| | |||||||||  |||||||||||||||  ||||||||||||||||||||||||| ||||  ||||||   |||||| ||| ||||||||    
T  16970566 gtgtttagagtgttttgtagtagggaatcatgtaaatcgacaaatcaagacatcatgtgaaggatcaaggatatgaag-tttgaagaccaacggttctta 16970664  T
Q  213 gaaggtgtttgaatacaatacaa 235  Q
    |||||| |||||| | |||||||    
T  16970665 gaaggtttttgaagaaaatacaa 16970687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 11474909 - 11475015
Alignment:
Q  73 tcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgt 172  Q
    |||||||||||||||||||||| | ||||||||||  |||| |||||| || | |||| ||||||| |||||||||||||  |||| ||||||||||  |    
T  11474909 tcgttgtaattcaattttatcctaaatcatgcaacttcatatgtgttttgagtcttttttagtgagaaatcatgtaaatcggcaaaacaagacatcacat 11475008  T
Q  173 gaaggat 179  Q
    |||||||    
T  11475009 gaaggat 11475015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 70 - 179
Target Start/End: Original strand, 26297809 - 26297915
Alignment:
Q  70 gagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatca 169  Q
    ||||||||||||||||||||||||| | ||||||||||  |||| ||||| || |||||   ||||||  |||||||||||||  |||| ||||||||||    
T  26297809 gagtcgttgtaattcaattttatcctaaatcatgcaacttcatatgtgttgagtctatt---tagtgataaatcatgtaaatcggcaaaacaagacatca 26297905  T
Q  170 tgtgaaggat 179  Q
     |||||||||    
T  26297906 agtgaaggat 26297915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 179
Target Start/End: Original strand, 28422519 - 28422621
Alignment:
Q  76 ttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaa 175  Q
    |||||||||| ||||||| || |||||||||| | || ||||||| || | |||||||||||| ||||||||| |||  |||||||| |||||| |||||    
T  28422519 ttgtaattcacttttatctaa-atcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtagatcgacaaatcaatacatcacgtgaa 28422617  T
Q  176 ggat 179  Q
    ||||    
T  28422618 ggat 28422621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 70 - 179
Target Start/End: Complemental strand, 8402605 - 8402498
Alignment:
Q  70 gagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatca 169  Q
    |||||||||||||||| |||||||  | |||||||||| |||||||||||| || | |||  ||| |||||||| ||||||||   | ||||||||||||    
T  8402605 gagtcgttgtaattcatttttatcttaaatcatgcaactccataggtgttttgagtcttt--tagcgaggaatcgtgtaaatcgatagatcaagacatca 8402508  T
Q  170 tgtgaaggat 179  Q
     |||||||||    
T  8402507 agtgaaggat 8402498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 153
Target Start/End: Original strand, 13911331 - 13911408
Alignment:
Q  76 ttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatca 153  Q
    |||||||||| |||||||| ||||||||||||  |||| ||||||  | | |||||||||||| ||||||||||||||    
T  13911331 ttgtaattcacttttatcctagatcatgcaacttcatatgtgtttttagtgttttgtagtgagaaatcatgtaaatca 13911408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 246
Target Start/End: Complemental strand, 19263905 - 19263782
Alignment:
Q  127 ttttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaaggataaaggat--gaagaactgaagatcaagggttcttagaaggtgtttg- 223  Q
    ||||||||| |||||||||| ||||| |||||||||| |||||  |||||||| ||||||  |||||  |||||||||| ||||| |||||||| |||      
T  19263905 ttttgtagtaaggaatcatggaaatcgtcaaatcaagtcatcacatgaaggatcaaggatatgaagat-tgaagatcaatggttcatagaaggttttttt 19263807  T
Q  224 --aatacaatacaaagggaagaaaa 246  Q
      || ||||||||||| ||||||||    
T  19263806 ttaagacaatacaaagtgaagaaaa 19263782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 179
Target Start/End: Complemental strand, 26387897 - 26387791
Alignment:
Q  72 gtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatg 171  Q
    ||||| |||||| | |||||||| | |||||||||| |||||| ||||| || | |||| || |||| |||||||||||||| | || |||||||||| |    
T  26387897 gtcgtagtaattaagttttatcctaaatcatgcaactccatagatgttttgagtctttt-taatgagaaatcatgtaaatcagctaaacaagacatcaag 26387799  T
Q  172 tgaaggat 179  Q
    ||||||||    
T  26387798 tgaaggat 26387791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 33914565 - 33914506
Alignment:
Q  127 ttttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaaggataaaggat 186  Q
    |||||||||||| |||||||||||||  | ||||||||||||| ||||||||| ||||||    
T  33914565 ttttgtagtgagaaatcatgtaaatcgacgaatcaagacatcacgtgaaggatcaaggat 33914506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 199
Target Start/End: Original strand, 27415236 - 27415357
Alignment:
Q  78 gtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaagg 177  Q
    |||||||| |||||||  | ||||||||||  ||||||||||| || | ||||||||| || ||||||||||||   | |||||||||||||  | ||||    
T  27415236 gtaattcacttttatcgtaaatcatgcaacttcataggtgttttgagtgttttgtagtaagaaatcatgtaaatagaccaatcaagacatcacataaagg 27415335  T
Q  178 ataaaggatgaagaactgaaga 199  Q
    || |||||| | ||| ||||||    
T  27415336 atcaaggataaggaattgaaga 27415357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 246
Target Start/End: Original strand, 18474236 - 18474406
Alignment:
Q  76 ttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaa 175  Q
    |||||||||| | |||||| | |||||||||| |||||||||||| || | ||||  |||||| |||||||||||||   ||  |||||||| |  ||||    
T  18474236 ttgtaattcactgttatcctaaatcatgcaactccataggtgttttgagtctttt-cagtgagaaatcatgtaaatcgggaacacaagacattacatgaa 18474334  T
Q  176 ggataaaggatg-aagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa 246  Q
    ||||  | |||| ||  | ||||  |||| ||| |||||||||| |||||| ||||||||||| ||||||||    
T  18474335 ggatcgaagatgtaaagattgaatttcaatggtacttagaaggtatttgaagacaatacaaagtgaagaaaa 18474406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 25919469 - 25919410
Alignment:
Q  127 ttttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaaggataaaggat 186  Q
    ||||||||||||||||||||||||||  |||| ||||| ||||  |||||||| ||||||    
T  25919469 ttttgtagtgaggaatcatgtaaatcgacaaaccaagatatcacatgaaggatcaaggat 25919410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 180
Target Start/End: Complemental strand, 2729673 - 2729563
Alignment:
Q  70 gagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatca 169  Q
    ||||| |||||||||| |||||||| | | ||||||||  |||| |||||| || | |||||||||||  |||| ||||||||   |||| |||||||||    
T  2729673 gagtccttgtaattcatttttatcctaaaccatgcaacttcatatgtgttttgagtgttttgtagtgataaatcttgtaaatcgaaaaattaagacatca 2729574  T
Q  170 tgtgaaggata 180  Q
     || |||||||    
T  2729573 cgtcaaggata 2729563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 267
Target Start/End: Original strand, 11521350 - 11521423
Alignment:
Q  195 gaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa-caatttaaagttcctaggagt 267  Q
    |||||||||||||| |||||||||  ||||| | ||||||||| ||||||||   |||| ||||||||||||||    
T  11521350 gaagatcaagggttgttagaaggttgttgaagataatacaaagcgaagaaaattcatttcaagttcctaggagt 11521423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 246
Target Start/End: Complemental strand, 19543042 - 19543002
Alignment:
Q  206 gttcttagaaggtgtttgaatacaatacaaagggaagaaaa 246  Q
    ||||||||||||| |||||| ||||||||||| ||||||||    
T  19543042 gttcttagaaggtatttgaagacaatacaaagtgaagaaaa 19543002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 70 - 267
Target Start/End: Original strand, 16054354 - 16054552
Alignment:
Q  70 gagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatca 169  Q
    |||| ||||||||||| |||||||| |||||||  ||| |||||| ||||| || | |||||||||||||||||||||||||||| || |||||||||||    
T  16054354 gagttgttgtaattcatttttatcctagatcataaaactccatagatgttttgattgttttgtagtgaggaatcatgtaaatcattaattcaagacatca 16054453  T
Q  170 tgtgaaggataaaggatgaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa-caatttaaagttcctaggagt 267  Q
    |||||||||| |||| ||| ||| |||||||||||||||||||||||||  ||||| | ||||||||| ||||||||   |||| ||||||||||||||    
T  16054454 tgtgaaggatcaaggttgatgaattgaagatcaagggttcttagaaggttgttgaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagt 16054552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 70 - 246
Target Start/End: Complemental strand, 13081992 - 13081813
Alignment:
Q  70 gagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaat---catgtaaatcatcaaatcaagaca 166  Q
    |||| ||||||||||| || ||||| ||||||||||||  ||||||||||| ||   ||||||||||||||||   ||||||||||||||||| || |||    
T  13081992 gagtagttgtaattcagttgtatcctagatcatgcaacttcataggtgttttgagagttttgtagtgaggaatattcatgtaaatcatcaaattaataca 13081893  T
Q  167 tcatgtgaaggataaaggatgaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa 246  Q
    ||||||||||||| || ||| || || |||||||||||||||||||||||||  ||||| ||||||||||  ||||||||    
T  13081892 tcatgtgaaggatcaaagataaataattgaagatcaagggttcttagaaggttgttgaagacaatacaaaatgaagaaaa 13081813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 87 - 173
Target Start/End: Original strand, 26882485 - 26882571
Alignment:
Q  87 ttttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtg 173  Q
    |||||||| |||||||||||| |||||||||||| || | |||||||||||||||||||||||||||||||||||||||||| ||||    
T  26882485 ttttatcctagatcatgcaactccataggtgttttgattgttttgtagtgaggaatcatgtaaatcatcaaatcaagacatcttgtg 26882571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 77 - 186
Target Start/End: Complemental strand, 29047367 - 29047258
Alignment:
Q  77 tgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaag 176  Q
    ||||||||||||||||    ||||||||||| |||||  ||||| || | |||||||||||||||||||||||||||| || ||||||||||||||||||    
T  29047367 tgtaattcaattttataatggatcatgcaactccatatatgttttgagtgttttgtagtgaggaatcatgtaaatcataaattcaagacatcatgtgaag 29047268  T
Q  177 gataaaggat 186  Q
    ||| ||||||    
T  29047267 gatcaaggat 29047258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 98 - 246
Target Start/End: Complemental strand, 16052304 - 16052155
Alignment:
Q  98 atcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaaggataaaggat--gaagaactg 195  Q
    |||||||||| | |||||||||| || | |||||||||||| |||||| ||||||| |||||||||||||||  |||||||||||||||  |||||  |     
T  16052304 atcatgcaactcaataggtgttttgagtgttttgtagtgagaaatcatctaaatcaacaaatcaagacatcacatgaaggataaaggatatgaagat-ta 16052206  T
Q  196 aagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa 246  Q
    |||| ||| | |||||||||||| |||||| ||||||||||  ||||||||    
T  16052205 aagaccaatgattcttagaaggtttttgaagacaatacaaaatgaagaaaa 16052155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 73 - 246
Target Start/End: Complemental strand, 30851151 - 30850978
Alignment:
Q  73 tcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgt 172  Q
    |||||||||||||  ||||||| | |||||||||| | |||||||||| |  | | |  ||||||| |||| |||||||||||||| |||||||||  ||    
T  30851151 tcgttgtaattcagatttatcctaaatcatgcaactcaataggtgttttggatctatc-tagtgagaaatcgtgtaaatcatcaaagcaagacatctagt 30851053  T
Q  173 gaaggataaaggat--gaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa 246  Q
    ||||||| ||||||  |||||  |||||||||| ||||||||||| || |||||||| ||||||||| ||||||||    
T  30851052 gaaggatcaaggatatgaagat-tgaagatcaacggttcttagaatgtctttgaatataatacaaagtgaagaaaa 30850978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 70 - 246
Target Start/End: Complemental strand, 14424867 - 14424691
Alignment:
Q  70 gagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatca 169  Q
    |||||||||||||||| |||||||| | |||||||||| ||||||||||||  |   |||| ||||||| |||||||||||||  |||| ||||||| ||    
T  14424867 gagtcgttgtaattcagttttatcctaaatcatgcaactccataggtgttt-taggtttttttagtgagaaatcatgtaaatcggcaaaacaagacaaca 14424769  T
Q  170 tgtgaaggataaaggat--gaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa 246  Q
     | |||||||| | |||  |||| | |||||||||| |||||||||||||| |||||| ||||| ||| | ||||||||    
T  14424768 agggaaggatatatgataagaag-attgaagatcaatggttcttagaaggtttttgaacacaattcaatgtgaagaaaa 14424691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 70 - 267
Target Start/End: Original strand, 28902149 - 28902347
Alignment:
Q  70 gagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatca 169  Q
    |||||||||||||||| |||||||| | | || ||||  ||||| ||||||  | | ||| |||||||| |||||||||||||| |||||| ||||||||    
T  28902149 gagtcgttgtaattcacttttatcctataccacgcaaatccataagtgtttttagtgtttagtagtgagaaatcatgtaaatcaacaaatcgagacatca 28902248  T
Q  170 tgtgaaggataaaggatgaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa-caatttaaagttcctaggagt 267  Q
     ||||||||| || |||    || | |||| ||| ||||||||||||||  ||||| ||||||||||| ||| ||||   |||| ||||||||||||||    
T  28902249 cgtgaaggatcaatgatattaaattaaagaccaatggttcttagaaggttattgaagacaatacaaagtgaataaaattcattttaagttcctaggagt 28902347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 186
Target Start/End: Original strand, 28074570 - 28074688
Alignment:
Q  67 attgagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagaca 166  Q
    |||||||||||| |||||| |||||||| | |||||||||| |||||||||||| || | |||| ||||||| ||||||||||||   |||| |||||||    
T  28074570 attgagtcgttgcaattcacttttatcctaaatcatgcaactccataggtgtttcgagtctttt-tagtgagaaatcatgtaaatatgcaaaacaagaca 28074668  T
Q  167 tcatgtgaaggataaaggat 186  Q
    |||  |||||||| ||||||    
T  28074669 tcaaatgaaggatcaaggat 28074688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 155 - 267
Target Start/End: Complemental strand, 11310225 - 11310113
Alignment:
Q  155 caaatcaagacatcatgtgaaggataaaggat--gaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaacaattt 252  Q
    ||||||||||||||||||||||||| ||||||  |||||  | ||| |||| | |||||||||||| |||||| ||||||||||| ||||||||  ||||    
T  11310225 caaatcaagacatcatgtgaaggatcaaggatatgaagattt-aag-tcaatgattcttagaaggtttttgaaaacaatacaaagtgaagaaaattattt 11310128  T
Q  253 aaagttcctaggagt 267  Q
     ||||||||||||||    
T  11310127 caagttcctaggagt 11310113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 186
Target Start/End: Original strand, 32239345 - 32239463
Alignment:
Q  68 ttgagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacat 167  Q
    ||||||||||| |||||| |||||||  | |||||||||| |||||  ||||| || | |||||||||||| |||| |||||||   |||||| ||||||    
T  32239345 ttgagtcgttgcaattcacttttatcttaaatcatgcaactccataaatgttttgagtgttttgtagtgagaaatcgtgtaaattgacaaatcgagacat 32239444  T
Q  168 catgtgaaggataaaggat 186  Q
    ||  |||||||||||||||    
T  32239445 cacatgaaggataaaggat 32239463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 179
Target Start/End: Complemental strand, 27097858 - 27097746
Alignment:
Q  68 ttgagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagact-attttgtagtgaggaatcatgtaaatcatcaaatcaagaca 166  Q
    |||||||||||||||||| |||||||  | ||||||||||  |||||||||||| | |  |||| ||||||| |||||||||||||  |||| |||||||    
T  27097858 ttgagtcgttgtaattcagttttatcataaatcatgcaacttcataggtgtttaaagtctttttttagtgagaaatcatgtaaatcggcaaaacaagaca 27097759  T
Q  167 tcatgtgaaggat 179  Q
    ||| |||| ||||    
T  27097758 tcacgtgatggat 27097746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 71 - 179
Target Start/End: Complemental strand, 28260343 - 28260236
Alignment:
Q  71 agtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcat 170  Q
    ||||||||||||| |  ||||||| | ||||||  || |||||||||||| || | |||| ||||||| |||||||||||||| |||| ||||||||||     
T  28260343 agtcgttgtaatttaggtttatcctaaatcatgagactccataggtgttttgagtctttt-tagtgagaaatcatgtaaatcagcaaaacaagacatcac 28260245  T
Q  171 gtgaaggat 179  Q
    ||| |||||    
T  28260244 gtggaggat 28260236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 167
Target Start/End: Original strand, 31436546 - 31436635
Alignment:
Q  77 tgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacat 167  Q
    ||||||| | |||||||| | ||||||||||  ||||||||||| || | |||| ||||||| |||||||||||||| |||| ||||||||    
T  31436546 tgtaatttagttttatcctaaatcatgcaactacataggtgttttgaatctttt-tagtgagaaatcatgtaaatcaacaaaacaagacat 31436635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 243
Target Start/End: Original strand, 11437479 - 11437653
Alignment:
Q  70 gagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatca 169  Q
    |||||||| ||||||| ||| |||  || ||||||||| ||||| || ||| || | |||| ||||||| |||||||||||||  |||| ||||||||||    
T  11437479 gagtcgttataattcagtttcatcataggtcatgcaactccatatgtattttgagtctttt-tagtgagaaatcatgtaaatcggcaaaacaagacatca 11437577  T
Q  170 tgtg-aaggataaagg--atgaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaaga 243  Q
     ||| |||||| ||||  ||||| || ||||| |||| ||||||||||||   |||||| |||||||| || |||||    
T  11437578 agtgaaaggatcaaggatatgaa-aattgaagttcaatggttcttagaagacatttgaagacaatacagagtgaaga 11437653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 70 - 169
Target Start/End: Complemental strand, 5570196 - 5570097
Alignment:
Q  70 gagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatca 169  Q
    |||| ||||||||||| |||||||| | ||||||||||  | ||||||||| || | |||| |||||| | || |||||||||  |||||| ||||||||    
T  5570196 gagttgttgtaattcacttttatcctatatcatgcaacttcgtaggtgttttgagtgttttctagtgatgcattatgtaaatcgacaaatcgagacatca 5570097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 179
Target Start/End: Original strand, 10867046 - 10867156
Alignment:
Q  68 ttgagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacat 167  Q
    |||||||||||||||||| |||||||  | |||||||||| ||| ||||| || || | |||| ||||||| |||||||||| ||  |||| ||||| |     
T  10867046 ttgagtcgttgtaattcagttttatctcaaatcatgcaactccaaaggtgctttgaatctttt-tagtgagaaatcatgtaagtcggcaaaacaagatac 10867144  T
Q  168 catgtgaaggat 179  Q
    || |||||||||    
T  10867145 cacgtgaaggat 10867156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 135 - 186
Target Start/End: Original strand, 24120348 - 24120399
Alignment:
Q  135 tgaggaatcatgtaaatcatcaaatcaagacatcatgtgaaggataaaggat 186  Q
    |||||||||||| |||||  | ||||||||||||||||||||||| ||||||    
T  24120348 tgaggaatcatgcaaatcgaccaatcaagacatcatgtgaaggatcaaggat 24120399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 237
Target Start/End: Original strand, 24696641 - 24696809
Alignment:
Q  70 gagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatca 169  Q
    |||||||||||||| | || ||||| | ||||| |||   || ||||||||  | | |||| |||| || |||||||||||||| |||||||||||||||    
T  24696641 gagtcgttgtaatttacttctatcctaaatcatacaatttcacaggtgtttttagtgttttatagtaagaaatcatgtaaatcaacaaatcaagacatca 24696740  T
Q  170 tgtgaaggataaagg--atgaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaag 237  Q
      | |||||| ||||  |||||| | |||||| ||   ||||||||||||| |||||| | |||||||||    
T  24696741 cataaaggatcaaggatatgaag-attgaagaccacttgttcttagaaggtttttgaagaaaatacaaag 24696809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 246
Target Start/End: Complemental strand, 28292087 - 28291979
Alignment:
Q  139 gaatcatgtaaatcatcaaatcaagacatcatgtgaaggataaaggat--gaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaa 236  Q
    ||||||||||||||  ||||  |||||||||  ||||||||  |||||  |||||  ||||||| || |||||||||||||| |||||| ||||||||||    
T  28292087 gaatcatgtaaatcgccaaaataagacatcacatgaaggattgaggatatgaagat-tgaagattaatggttcttagaaggtctttgaagacaatacaaa 28291989  T
Q  237 gggaagaaaa 246  Q
      ||||||||    
T  28291988 atgaagaaaa 28291979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 151
Target Start/End: Complemental strand, 24584779 - 24584698
Alignment:
Q  70 gagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaat 151  Q
    ||||| |||||||||| |||||||  | |||||||||| | |||||| ||| || | |||||||||||| |||| |||||||    
T  24584779 gagtcattgtaattcatttttatcataaatcatgcaactctataggtattttgagttttttgtagtgagaaatcttgtaaat 24584698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 12774900 - 12774848
Alignment:
Q  68 ttgagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgttt 120  Q
    ||||||| |||||||| | |||||||| | ||||||||| |||||||||||||    
T  12774900 ttgagtcattgtaatttagttttatcctaaatcatgcaataccataggtgttt 12774848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 71 - 266
Target Start/End: Original strand, 15574985 - 15575181
Alignment:
Q  71 agtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcat 170  Q
    ||||||||||||| | ||||| || |||||||||||| |||||||| |||  | | |||||||| |||||||||||||||| | |||||||||||||||     
T  15574985 agtcgttgtaatttagttttagcctagatcatgcaactccataggttttttaagtgttttgtagcgaggaatcatgtaaattaacaaatcaagacatcac 15575084  T
Q  171 gtgaaggataaaggatgaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa-caatttaaagttcctaggag 266  Q
    ||||||||| || ||||||||| |||||||||||||||||||||||||  ||||| ||||||||||| ||||||||   |||| |||||||||||||    
T  15575085 gtgaaggatcaacgatgaagaattgaagatcaagggttcttagaaggtcgttgaagacaatacaaagtgaagaaaattcatttcaagttcctaggag 15575181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 98 - 267
Target Start/End: Original strand, 15998599 - 15998768
Alignment:
Q  98 atcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaaggataaaggatgaagaactgaa 197  Q
    ||||||||||  ||||||||||| || | ||||||||||||||||||||||||| | ||||||||||||||||||||| ||| |||||| ||||| ||||    
T  15998599 atcatgcaacttcataggtgttttgagtgttttgtagtgaggaatcatgtaaatgaccaaatcaagacatcatgtgaatgatcaaggat-aagaattgaa 15998697  T
Q  198 gatcaagggttcttagaaggtgtttgaatacaatacaaagggaag-aaaacaatttaaagttcctaggagt 267  Q
    || || ||| |||||||||||  ||| | ||||||||||| |||| |||   |||| ||||||||||||||    
T  15998698 gaccatgggctcttagaaggttgttgtagacaatacaaagtgaagcaaattcatttcaagttcctaggagt 15998768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 98 - 267
Target Start/End: Complemental strand, 17860475 - 17860305
Alignment:
Q  98 atcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaaggataaaggatgaagaactgaa 197  Q
    |||||||||| ||||| ||| || || | |||||||||||| |||||||||| ||| ||||||| ||||||| ||||||||||||| || |  || ||||    
T  17860475 atcatgcaactccatacgtgctttgagtgttttgtagtgagaaatcatgtaattcaacaaatcaggacatcacgtgaaggataaagtataagaaattgaa 17860376  T
Q  198 gatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa-caatttaaagttcctaggagt 267  Q
    |  ||| |||||||||||||| |||| | ||||||||||| ||||||||   |||| ||||||||||||||    
T  17860375 ggacaatggttcttagaaggtttttgtagacaatacaaagtgaagaaaattcatttcaagttcctaggagt 17860305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 98 - 179
Target Start/End: Complemental strand, 24507469 - 24507388
Alignment:
Q  98 atcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaaggat 179  Q
    |||||||||| |||||||||||| ||   |||||||||||| |||| ||||||||| ||||||||||||||| |||||||||    
T  24507469 atcatgcaactccataggtgttttgagagttttgtagtgagaaatcctgtaaatcaacaaatcaagacatcacgtgaaggat 24507388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 71 - 246
Target Start/End: Complemental strand, 26499900 - 26499725
Alignment:
Q  71 agtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcat 170  Q
    |||||||||||||| ||||||||| | |||||| ||   ||||||||||  || | |||| ||||||| ||||||| |||||  |||| ||||| | ||     
T  26499900 agtcgttgtaattcgattttatcctaaatcatgtaatttcataggtgttatgagtgtttt-tagtgagaaatcatgcaaatcggcaaaacaagataccac 26499802  T
Q  171 gtgaaggataaaggat--gaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa 246  Q
    ||||| |||  |||||  |||||  |||||||||| |||||||||||||| |||||| |||||||||||  |||||||    
T  26499801 gtgaaagatcgaggatatgaagat-tgaagatcaatggttcttagaaggtttttgaagacaatacaaagtaaagaaaa 26499725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 70 - 186
Target Start/End: Original strand, 24617571 - 24617686
Alignment:
Q  70 gagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatca 169  Q
    ||||||| |||||||| |||||||| | |||||| |||  |||  |||||| || | |||| ||||||| ||| |||||||||| |||| ||||||||||    
T  24617571 gagtcgtcgtaattcagttttatcctaaatcatgtaacttcatgagtgttttgagtctttt-tagtgagaaattatgtaaatcagcaaaacaagacatca 24617669  T
Q  170 tgtgaaggataaaggat 186  Q
    |||||||| | ||||||    
T  24617670 tgtgaagggtcaaggat 24617686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 120
Target Start/End: Original strand, 16527950 - 16528000
Alignment:
Q  70 gagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgttt 120  Q
    |||||||||||||||| |||||||| ||||||||||||  |||||||||||    
T  16527950 gagtcgttgtaattcatttttatcctagatcatgcaacttcataggtgttt 16528000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 152
Target Start/End: Complemental strand, 9943199 - 9943123
Alignment:
Q  75 gttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatc 152  Q
    ||||||||||| |||||||| | |||||||||| ||||||||||||  | |||||| || |||| |||||||||||||    
T  9943199 gttgtaattcacttttatcctaaatcatgcaactccataggtgtttttagtatttt-tattgagaaatcatgtaaatc 9943123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 246
Target Start/End: Complemental strand, 33638498 - 33638383
Alignment:
Q  132 tagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaaggataaagg--atgaagaactgaagatcaagggttcttagaaggtgtttgaataca 229  Q
    ||||||| |||||||||||||  |||| ||| | |||| ||||||||| ||||  |||||| | |||||||||| |||||||| ||||| |||||| | |    
T  33638498 tagtgagaaatcatgtaaatcggcaaaacaatatatcaagtgaaggatcaaggatatgaag-attgaagatcaatggttcttataaggtctttgaagata 33638400  T
Q  230 atacaaagggaagaaaa 246  Q
    |||||||| ||| ||||    
T  33638399 atacaaagtgaataaaa 33638383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 215
Target Start/End: Original strand, 16439515 - 16439663
Alignment:
Q  67 attgagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagaca 166  Q
    ||||||||||| ||||| | |||||||| | || |||||||  || | |||||| || | |||| ||||||| ||||||||||||||  ||| |||||||    
T  16439515 attgagtcgttataattaacttttatcctaaataatgcaacttcacatgtgttttgagtctttt-tagtgagaaatcatgtaaatcagaaaaacaagaca 16439613  T
Q  167 tcatgtgaaggataaagg--atgaagaactgaagatcaagggttcttagaa 215  Q
    |||  |||| ||| | ||  |||||||| |||||||||| |||||||||||    
T  16439614 tcagatgaaagatcagggatatgaagaa-tgaagatcaatggttcttagaa 16439663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 181
Target Start/End: Original strand, 22262458 - 22262512
Alignment:
Q  127 ttttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaaggataa 181  Q
    |||||||||||||| ||||||||||   |||||||| ||||||||||| ||||||    
T  22262458 ttttgtagtgaggactcatgtaaattggcaaatcaaaacatcatgtgagggataa 22262512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 68 - 267
Target Start/End: Original strand, 22229862 - 22230062
Alignment:
Q  68 ttgagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacat 167  Q
    |||||||||||||||||| |||||||| ||| |||||||| ||| | |||||| |  ||||||||||||||||||||||||||||| |||||||||||||    
T  22229862 ttgagtcgttgtaattcagttttatcctagaccatgcaactccacaagtgttttgggtattttgtagtgaggaatcatgtaaatcaacaaatcaagacat 22229961  T
Q  168 catgtgaaggataaaggatgaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaaca-atttaaagttcctaggag 266  Q
    || ||||||||| || |||   ||| |||||||||||||||||||||||||  ||||| | ||||| ||| |||||||||| || | |||||||||||||    
T  22229962 cacgtgaaggatcaaagatatggaattgaagatcaagggttcttagaaggttgttgaagataataccaagtgaagaaaacacatctcaagttcctaggag 22230061  T
Q  267 t 267  Q
    |    
T  22230062 t 22230062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 76 - 237
Target Start/End: Complemental strand, 12340063 - 12339902
Alignment:
Q  76 ttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaa 175  Q
    |||||||||| |||||| | ||||||||||||  |||| || ||| |  | ||||||||| ||||||||| ||||||| ||||||||||||||| |||||    
T  12340063 ttgtaattcagttttatactagatcatgcaacttcatatgtattttgcgtgttttgtagtaaggaatcatataaatcaacaaatcaagacatcacgtgaa 12339964  T
Q  176 ggataaaggatgaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaag 237  Q
    |||| |||||||||||| |||| ||||||||||||||||||||  ||||| |||||||||||    
T  12339963 ggatcaaggatgaagaattgaaaatcaagggttcttagaaggtcgttgaagacaatacaaag 12339902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 109 - 212
Target Start/End: Complemental strand, 25075328 - 25075225
Alignment:
Q  109 ccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaaggataaaggatgaagaactgaagatcaagggtt 208  Q
    |||||||||||| || | ||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  25075328 ccataggtgttttgagtgttttgtagtaagaaatcatgtaaatcatcaaatcaagacatcatgtgaaggatcaaggatgaagaattgaagatcaagggtt 25075229  T
Q  209 ctta 212  Q
    ||||    
T  25075228 ctta 25075225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 109 - 212
Target Start/End: Complemental strand, 25133297 - 25133194
Alignment:
Q  109 ccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaaggataaaggatgaagaactgaagatcaagggtt 208  Q
    |||||||||||| || | ||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  25133297 ccataggtgttttgagtgttttgtagtaagaaatcatgtaaatcatcaaatcaagacatcatgtgaaggatcaaggatgaagaattgaagatcaagggtt 25133198  T
Q  209 ctta 212  Q
    ||||    
T  25133197 ctta 25133194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 70 - 176
Target Start/End: Original strand, 15205703 - 15205809
Alignment:
Q  70 gagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatca 169  Q
    |||||||||||||||| |||| ||| |||||||||||  |||||||||||| || | ||||| |||||||||| ||||||||||||||||||| |||||     
T  15205703 gagtcgttgtaattcagttttctcctagatcatgcaattccataggtgttttgagtgttttgcagtgaggaataatgtaaatcatcaaatcaaaacatct 15205802  T
Q  170 tgtgaag 176  Q
    |||||||    
T  15205803 tgtgaag 15205809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 79 - 218
Target Start/End: Original strand, 22754963 - 22755103
Alignment:
Q  79 taattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaagga 178  Q
    ||||||| |||||||| |||| |||||||  ||||||||||| || | ||||| |||||| |||||||||||||||||||||||||||| | ||  ||||    
T  22754963 taattcagttttatcctagattatgcaacttcataggtgttttgagtgttttgaagtgagaaatcatgtaaatcatcaaatcaagacataacgtacagga 22755062  T
Q  179 taaaggatgaa-gaactgaagatcaagggttcttagaaggt 218  Q
    | || ||| || ||| ||||||||||||||||||| |||||    
T  22755063 tcaaagattaatgaattgaagatcaagggttcttataaggt 22755103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 87 - 235
Target Start/End: Complemental strand, 11274368 - 11274219
Alignment:
Q  87 ttttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaaggataaagg-- 184  Q
    |||||||| | |||||||||| |||||||||||| || | ||||||||| || ||||||||| |||  |||||||||||||||  |||||||| ||||      
T  11274368 ttttatcctaaatcatgcaactccataggtgttttgagtgttttgtagtaagaaatcatgtatatcgacaaatcaagacatcacatgaaggatcaaggat 11274269  T
Q  185 atgaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaa 235  Q
    |||||| | |||||| ||| |||||||||||||| |||||| |||||||||    
T  11274268 atgaag-attgaagaccaatggttcttagaaggtctttgaagacaatacaa 11274219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 75 - 267
Target Start/End: Complemental strand, 26330117 - 26329926
Alignment:
Q  75 gttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtga 174  Q
    ||||||||||  |||||||| ||||||||||||  ||||||||||| || | |||||||||||  ||||||||||||    ||||||||||||||  |||    
T  26330117 gttgtaattcccttttatcctagatcatgcaacttcataggtgttttgagtgttttgtagtga--aatcatgtaaattgaaaaatcaagacatcacatga 26330020  T
Q  175 aggataaaggat--gaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa-caatttaaagttcctaggagt 267  Q
    ||||| ||||||  |||||  ||||| |||| ||| |||||||||| ||| || ||||||||||| ||||||||   |||| ||||||||||||||    
T  26330019 aggatcaaggatatgaagat-tgaag-tcaatggtccttagaaggttttttaagacaatacaaagtgaagaaaattcatttcaagttcctaggagt 26329926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 70 - 178
Target Start/End: Original strand, 16634106 - 16634214
Alignment:
Q  70 gagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatca 169  Q
    |||||||||||||||| |||||| | | |||||||||| | |||||||||| || | ||||| |||||| |||||| ||||||  |||||||||||||||    
T  16634106 gagtcgttgtaattcacttttattctaaatcatgcaactctataggtgttttgaatgttttgcagtgagaaatcatataaatcgacaaatcaagacatca 16634205  T
Q  170 tgtgaagga 178  Q
     ||||||||    
T  16634206 cgtgaagga 16634214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 70 - 186
Target Start/End: Original strand, 24841813 - 24841929
Alignment:
Q  70 gagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatca 169  Q
    |||||||||||| ||| |||||||| |||||||| ||| ||||||||||||  | | |||||||||||| ||||||||||||    ||||||||||| ||    
T  24841813 gagtcgttgtaagtcacttttatcctagatcatggaactccataggtgtttttagtgttttgtagtgagaaatcatgtaaattgaaaaatcaagacaaca 24841912  T
Q  170 tgtgaaggataaaggat 186  Q
     ||||||||| ||||||    
T  24841913 cgtgaaggatcaaggat 24841929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 246
Target Start/End: Complemental strand, 7742924 - 7742748
Alignment:
Q  70 gagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatca 169  Q
    ||||| |||||||||| |||||||| | |||||| || | |||| |||||| || | |||| || |||| ||||||||||||||  ||| ||| ||||||    
T  7742924 gagtctttgtaattcacttttatcctaaatcatgtaaaatcatatgtgttttgagtttttt-taatgagaaatcatgtaaatcagtaaaacaaaacatca 7742826  T
Q  170 tgtgaaggataaaggat--gaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa 246  Q
     |||||| ||  | |||  ||||| ||||||||||| |||||||||||||| |||||| ||||||||||| ||||||||    
T  7742825 cgtgaagaatcgaagatatgaaga-ctgaagatcaatggttcttagaaggtctttgaagacaatacaaagtgaagaaaa 7742748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 68 - 267
Target Start/End: Original strand, 17027585 - 17027785
Alignment:
Q  68 ttgagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacat 167  Q
    |||||||||||||||||| |||||||| | |||| ||||| |||||||||||| |||| |||||   |||| |||||||||||||   ||||||||||||    
T  17027585 ttgagtcgttgtaattcacttttatcctaaatcacgcaactccataggtgttttgactgttttgccatgagaaatcatgtaaatcgaaaaatcaagacat 17027684  T
Q  168 catgtgaaggataaagg--atgaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa-caatttaaagttcctagg 264  Q
    || ||| | ||| || |  |||||| | ||||| | || | ||||||||||||  ||||| ||||||||||| ||||||||  ||||| || ||||||||    
T  17027685 cacgtgcaagatcaaagatatgaag-attgaag-ttaatgcttcttagaaggttcttgaagacaatacaaagtgaagaaaattaatttcaatttcctagg 17027782  T
Q  265 agt 267  Q
    |||    
T  17027783 agt 17027785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 17382042 - 17381983
Alignment:
Q  127 ttttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaaggataaaggat 186  Q
    |||||||||||| ||||||||||||| |||||||||||||| ||||||||||| ||||||    
T  17382042 ttttgtagtgagaaatcatgtaaatcgtcaaatcaagacataatgtgaaggatcaaggat 17381983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 186
Target Start/End: Original strand, 18222553 - 18222669
Alignment:
Q  70 gagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatca 169  Q
    ||||| |||||||||| |||||||| | |||||||||  |||||||||||| || | |||| |||| || ||| |||||||||| ||||||||| || ||    
T  18222553 gagtcattgtaattcacttttatcctaaatcatgcaaatccataggtgttttgagtgttttatagtaagtaattatgtaaatcaacaaatcaaggcaaca 18222652  T
Q  170 tgtgaaggataaaggat 186  Q
     ||||| ||| ||||||    
T  18222653 cgtgaaagatcaaggat 18222669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 70 - 233
Target Start/End: Original strand, 20694700 - 20694863
Alignment:
Q  70 gagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatca 169  Q
    ||||| |||||||||| |||||||| | || || ||||  |||| |||||| || | |||| |||| || |||||||||||||  |||| ||||||||||    
T  20694700 gagtcattgtaattcagttttatcccaaattattcaactgcatatgtgttttgagtctttt-tagtaagaaatcatgtaaatcggcaaaacaagacatca 20694798  T
Q  170 tgtgaaggataaagg--atgaagaactgaagatcaagggttcttagaaggtgtttgaatacaatac 233  Q
    | |||||||||| ||  || ||| | ||||||| || |||||||||||||| |||||| |||||||    
T  20694799 tatgaaggataacggacattaag-attgaagataaatggttcttagaaggtatttgaagacaatac 20694863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 19763816 - 19763764
Alignment:
Q  194 tgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa 246  Q
    ||||||||||||||||||||||||| |||||| | ||||||||| ||||||||    
T  19763816 tgaagatcaagggttcttagaaggtttttgaagataatacaaagtgaagaaaa 19763764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 70 - 246
Target Start/End: Original strand, 25680656 - 25680823
Alignment:
Q  70 gagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatca 169  Q
    ||||||||||||||||||||||| | | ||||||||||  ||||||||         ||||||||| || | |||||||||||  |||| ||||| ||||    
T  25680656 gagtcgttgtaattcaattttattctaaatcatgcaacttcataggtg---------ttttgtagtaagaattcatgtaaatcgacaaaccaagaaatca 25680746  T
Q  170 tgtgaaggataaaggatgaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa 246  Q
    |||||||||| |||||| |  || | |||  |||  ||||||||||||| || ||| |||||||||||  |||||||    
T  25680747 tgtgaaggatcaaggataagaaatttaaggccaatagttcttagaaggttttagaaaacaatacaaagtaaagaaaa 25680823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 246
Target Start/End: Complemental strand, 16622674 - 16622555
Alignment:
Q  127 ttttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaaggataaagg--atgaagaactgaagatcaagggttcttagaaggtgtttga 224  Q
    ||||| |||||| ||||||||||||   |||||||||||||||  |||||||| ||||  |||||| | |||||| ||  |||||||||||||| |||||    
T  16622674 ttttgcagtgagaaatcatgtaaattgacaaatcaagacatcacatgaaggattaaggatatgaag-attgaagaccagtggttcttagaaggt-tttga 16622577  T
Q  225 atacaatacaaagggaagaaaa 246  Q
    | ||||||||||  ||||||||    
T  16622576 agacaatacaaattgaagaaaa 16622555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 186
Target Start/End: Original strand, 26070541 - 26070649
Alignment:
Q  77 tgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaag 176  Q
    ||||||||| |||||||  | |||||||||| ||||| |||||| || | |||| ||||||| ||||||||||||   |||| ||||||||||  |||||    
T  26070541 tgtaattcagttttatcataaatcatgcaactccataagtgttttgagtctttt-tagtgagaaatcatgtaaattggcaaaacaagacatcacatgaag 26070639  T
Q  177 gataaaggat 186  Q
    ||| ||||||    
T  26070640 gatcaaggat 26070649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 148
Target Start/End: Complemental strand, 16603668 - 16603590
Alignment:
Q  70 gagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgta 148  Q
    |||||||||||||| ||||||| || | |||||||||   ||||||||||| || | |||| ||||||| |||||||||    
T  16603668 gagtcgttgtaattaaattttagcctaaatcatgcaatttcataggtgttttgagtgttttctagtgagaaatcatgta 16603590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 152
Target Start/End: Original strand, 25367654 - 25367735
Alignment:
Q  70 gagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatc 152  Q
    ||||||||| |||||| |||||||  | ||||||||||  ||||||||||| || | |||| ||||||| |||||||||||||    
T  25367654 gagtcgttgaaattcagttttatcataaatcatgcaacttcataggtgttttgagtctttt-tagtgagaaatcatgtaaatc 25367735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 18452742 - 18452690
Alignment:
Q  194 tgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa 246  Q
    |||||||||| |||||||| ||||| ||| || ||||||||||| ||||||||    
T  18452742 tgaagatcaatggttcttataaggttttttaaaacaatacaaagtgaagaaaa 18452690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 186
Target Start/End: Complemental strand, 25594747 - 25594631
Alignment:
Q  70 gagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatca 169  Q
    |||| |||||| |||| |||||||| | || |||||||  |||| |||||| || | |||| ||||||| |||||||||||||   |||| |||||||||    
T  25594747 gagttgttgtatttcatttttatcctaaatgatgcaacttcatatgtgttttgagtgttttatagtgagaaatcatgtaaatcgaaaaattaagacatca 25594648  T
Q  170 tgtgaaggataaaggat 186  Q
      |||| ||| ||||||    
T  25594647 catgaacgatcaaggat 25594631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 245
Target Start/End: Original strand, 30072233 - 30072351
Alignment:
Q  128 tttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaaggataaaggat--gaagaactgaagatcaagggttcttagaaggtgtttgaa 225  Q
    ||||||||| | |||||| | ||||  |||||||||||||||  |||||||| || |||  |||||  ||||||| || |||||||| ||||| ||| ||    
T  30072233 tttgtagtgggaaatcatattaatcgacaaatcaagacatcacatgaaggatcaaagatatgaagat-tgaagattaatggttcttaaaaggtttttaaa 30072331  T
Q  226 tacaatacaaagggaagaaa 245  Q
     ||||||||||| |||||||    
T  30072332 gacaatacaaagtgaagaaa 30072351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 5e-44; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 76 - 218
Target Start/End: Complemental strand, 9783032 - 9782890
Alignment:
Q  76 ttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaa 175  Q
    |||||||||| ||||||   |||||||||||| |||||||| |||||| | ||||||||||||||||||||||||||| ||||||||||||||||||| |    
T  9783032 ttgtaattcagttttattttagatcatgcaactccataggtttttagagtgttttgtagtgaggaatcatgtaaatcaacaaatcaagacatcatgtgga 9782933  T
Q  176 ggataaaggatgaagaactgaagatcaagggttcttagaaggt 218  Q
    |||| || ||||||||| |||||||||||||||||||||||||    
T  9782932 ggatcaaagatgaagaattgaagatcaagggttcttagaaggt 9782890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 75 - 267
Target Start/End: Original strand, 15192268 - 15192461
Alignment:
Q  75 gttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtga 174  Q
    ||||||||||| |||||||| ||||| |||| | |||||||||||| || | |||||||||||| |||||||||||||  |||| |||||||||| ||||    
T  15192268 gttgtaattcacttttatcctagatcgtgcagctccataggtgttttgagtgttttgtagtgagaaatcatgtaaatcgacaaaccaagacatcacgtga 15192367  T
Q  175 aggataaaggatgaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaaga-aaacaatttaaagttcctaggagt 267  Q
    ||||| ||||||    || |||||| ||| ||||||||||||||  ||||| ||||| ||||| ||||| ||   |||| ||||||||||||||    
T  15192368 aggatcaaggatatgaaattgaagaccaatggttcttagaaggttgttgaagacaattcaaagtgaagacaattcatttcaagttcctaggagt 15192461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 68 - 186
Target Start/End: Complemental strand, 25315288 - 25315170
Alignment:
Q  68 ttgagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacat 167  Q
    |||||||||||||||| | |||||||| |||||||||||| ||||| | |||| || || |||||||||||||||||||||||||  |||||||||||||    
T  25315288 ttgagtcgttgtaattaagttttatcctagatcatgcaactccatatgggttttgagtaatttgtagtgaggaatcatgtaaatcgacaaatcaagacat 25315189  T
Q  168 catgtgaaggataaaggat 186  Q
    |   |||||||| ||||||    
T  25315188 cgcatgaaggatcaaggat 25315170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 70 - 267
Target Start/End: Complemental strand, 17026751 - 17026553
Alignment:
Q  70 gagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatca 169  Q
    |||| ||||||||||| |||||||| |||||||||||| |||||||||||| || | ||||||||| |  |||||||||||||  ||||| |||||||||    
T  17026751 gagttgttgtaattcacttttatcctagatcatgcaactccataggtgttttgagtgttttgtagtcataaatcatgtaaatcgacaaattaagacatca 17026652  T
Q  170 tgtgaaggataaaggat-gaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa-caatttaaagttcctaggagt 267  Q
      |||||||| ||| ||   |||| | ||| | || |||||||| || || |||||| ||||||||||| ||||||||  ||||| ||||||||||||||    
T  17026651 catgaaggatcaagtatatgagaatttaag-ttaatggttcttaaaaagtttttgaagacaatacaaagtgaagaaaattaatttcaagttcctaggagt 17026553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 86 - 246
Target Start/End: Complemental strand, 31859939 - 31859779
Alignment:
Q  86 attttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaaggataaagg- 184  Q
    ||||||||| | ||||||||||  ||||||||||| || | |||| ||||||| |||||||||||||| |||| ||||||| || |||||||||  |||     
T  31859939 attttatcctaaatcatgcaactgcataggtgttttgagtctttt-tagtgagaaatcatgtaaatcagcaaaacaagacaccaggtgaaggatcgagga 31859841  T
Q  185 -atgaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa 246  Q
     |||||  | |||||||||| |||||||||||||| |||||| ||||||||||| ||||||||    
T  31859840 tatgaa-tattgaagatcaatggttcttagaaggtatttgaagacaatacaaagtgaagaaaa 31859779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 70 - 267
Target Start/End: Original strand, 27302838 - 27303035
Alignment:
Q  70 gagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatca 169  Q
    ||||| ||||||||||||| ||| | ||||||||||||  ||| |||||||  | ||||||||||||| ||||||||||||||  ||||| |||||||||    
T  27302838 gagtcattgtaattcaattatatactagatcatgcaacttcat-ggtgtttttagtattttgtagtgatgaatcatgtaaatcgacaaattaagacatca 27302936  T
Q  170 tgtgaaggataaaggatgaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa-caatttaaagttcctaggagt 267  Q
     ||| | ||| ||||||    || |||| || ||||||||||||||||| |||||| ||| || |||| ||||||||   |||| ||||||||||||||    
T  27302937 cgtgcaagatcaaggatatgaaattgaacattaagggttcttagaaggtttttgaagacattataaagtgaagaaaattcattttaagttcctaggagt 27303035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 76 - 263
Target Start/End: Complemental strand, 34864342 - 34864156
Alignment:
Q  76 ttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaa 175  Q
    |||||||||| |||||||| | || ||| ||| ||||  |||||| || | |||||||||||| |||||||||||||  ||||||||||||||| |||||    
T  34864342 ttgtaattcacttttatcctaaattatgaaactccat--gtgttttgagtgttttgtagtgagaaatcatgtaaatcgacaaatcaagacatcacgtgaa 34864245  T
Q  176 ggataaaggatgaaga-actgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa-caatttaaagttcctag 263  Q
    |||| || |||   || | ||||| |||| |||||||||||||| |||| | ||||||||||  ||||||||   |||||||||||||||    
T  34864244 ggatcaaagatatggagattgaag-tcaatggttcttagaaggtttttgtagacaatacaaaatgaagaaaattcatttaaagttcctag 34864156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 75 - 175
Target Start/End: Original strand, 19601863 - 19601963
Alignment:
Q  75 gttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtga 174  Q
    ||||||||||| |||||||| | |||||||||| |||||||| |||  |   |||| ||||||| |||||||||||||| ||||||||||||||| ||||    
T  19601863 gttgtaattcacttttatcctaaatcatgcaactccataggtatttttagcgttttctagtgagaaatcatgtaaatcaacaaatcaagacatcacgtga 19601962  T
Q  175 a 175  Q
    |    
T  19601963 a 19601963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 70 - 267
Target Start/End: Complemental strand, 10320274 - 10320077
Alignment:
Q  70 gagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatca 169  Q
    |||||||||||||||| |||||||| ||| |||||||| ||||||||||||  |   |||||||||||| ||||| ||||||   |||||| |||||| |    
T  10320274 gagtcgttgtaattcacttttatcctagaccatgcaactccataggtgttttaagctttttgtagtgagaaatcaggtaaattgacaaatc-agacataa 10320176  T
Q  170 tgtgaaggataaaggatg-aagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa-caatttaaagttcctaggagt 267  Q
      |||||||| |||||||  | || ||||| | || |||| ||||||||| || ||| ||||||||||| ||||||||   |||| ||||||||||||||    
T  10320175 catgaaggatcaaggatgtgaaaattgaag-ttaatggttgttagaaggtcttcgaaaacaatacaaagtgaagaaaatttatttcaagttcctaggagt 10320077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 186
Target Start/End: Original strand, 5676268 - 5676375
Alignment:
Q  79 taattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaagga 178  Q
    ||||||| |||||||| | ||  |||||| |||||||||||| || |||||| |||||| |||||||||||||    ||||||||||||||  |||||||    
T  5676268 taattcatttttatcctaaattgtgcaactccataggtgttttgagtattttttagtgatgaatcatgtaaattgataaatcaagacatcacatgaagga 5676367  T
Q  179 taaaggat 186  Q
    | ||||||    
T  5676368 tcaaggat 5676375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 175
Target Start/End: Complemental strand, 1695904 - 1695796
Alignment:
Q  68 ttgagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgagg-aatcatgtaaatc-atcaaatcaagac 165  Q
    ||||||| ||||||||||||||||||| |||||||||||| |||||| | ||| ||    |||||||||||| ||||||| ||||| |  ||||||||||    
T  1695904 ttgagtctttgtaattcaattttatcctagatcatgcaactccatagttattttga-gggtttgtagtgaggaaatcatgaaaatcaaaaaaatcaagac 1695806  T
Q  166 atcatgtgaa 175  Q
    ||||||||||    
T  1695805 atcatgtgaa 1695796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 127 - 267
Target Start/End: Complemental strand, 47024763 - 47024622
Alignment:
Q  127 ttttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaaggataaagg--atgaagaactgaagatcaagggttcttagaaggtgtttga 224  Q
    |||||||||||| |||||||||||||   |||||||||||||   |||||||| ||||  |||||| | ||||| |||| |||||||||||||| |||||    
T  47024763 ttttgtagtgagaaatcatgtaaatcgaaaaatcaagacatcgcatgaaggatcaaggacatgaag-attgaag-tcaatggttcttagaaggtttttga 47024666  T
Q  225 atacaatacaaagggaaga-aaacaatttaaagttcctaggagt 267  Q
    | ||| ||||||| ||||| ||   |||| ||||||||||||||    
T  47024665 aaacagtacaaagtgaagagaatttatttcaagttcctaggagt 47024622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 246
Target Start/End: Original strand, 18898099 - 18898218
Alignment:
Q  127 ttttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaaggataaagg--atgaagaactgaagatcaagggttcttagaaggtgtttga 224  Q
    |||||||||||| |||||||||||||  |||||||||||||||  ||||||||  |||  ||| || | ||||| |||  |||||||| ||||| |||||    
T  18898099 ttttgtagtgagaaatcatgtaaatcgacaaatcaagacatcacatgaaggatccagggtatgcag-attgaag-tcagtggttcttaaaaggtttttga 18898196  T
Q  225 atacaatacaaagggaagaaaa 246  Q
    |||||||||||||  |||||||    
T  18898197 atacaatacaaagtaaagaaaa 18898218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 225
Target Start/End: Original strand, 26159816 - 26159971
Alignment:
Q  70 gagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatca 169  Q
    |||||||||||||| | |||| ||| | || || ||||  |||| |||||| || | |||| ||||||  ||||||||| |||| |||| ||||||||||    
T  26159816 gagtcgttgtaatttagttttgtcctaaattatccaacttcatatgtgttttgagtctttt-tagtgaaaaatcatgtagatcagcaaaacaagacatca 26159914  T
Q  170 tgtgaaggataaagg--atgaagaactgaagatcaagggttcttagaaggtgtttgaa 225  Q
    ||||||||||  |||  |||||| | |||||||||| |||||||| ||||| ||||||    
T  26159915 tgtgaaggattcaggatatgaag-attgaagatcaatggttcttataaggtctttgaa 26159971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 51884786 - 51884860
Alignment:
Q  194 tgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa-caatttaaagttcctaggagt 267  Q
    ||||||||||||| ||||||||| |  ||||||||||||||||| ||||||||  ||||| ||||||||| ||||    
T  51884786 tgaagatcaagggctcttagaagattgttgaatacaatacaaagtgaagaaaattaatttcaagttcctatgagt 51884860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 237
Target Start/End: Original strand, 13064555 - 13064653
Alignment:
Q  140 aatcatgtaaatcatcaaatcaagacatcatgtgaaggataaaggatgaaga--actgaagatcaagggttcttagaaggtgtttgaatacaatacaaag 237  Q
    ||||||||||||   ||||||||||||||| ||||||||| |||||| ||||  | ||||| |||| |||||||||| ||| |||||| ||||| |||||    
T  13064555 aatcatgtaaattggcaaatcaagacatcacgtgaaggatcaaggat-aagacgattgaagttcaatggttcttagagggtatttgaagacaattcaaag 13064653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 9288331 - 9288385
Alignment:
Q  132 tagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaaggataaaggat 186  Q
    ||||||| |||||||||||||  |||| |||||||||| ||||||||| ||||||    
T  9288331 tagtgagaaatcatgtaaatcggcaaaacaagacatcaagtgaaggatcaaggat 9288385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 179
Target Start/End: Original strand, 29437539 - 29437639
Alignment:
Q  78 gtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaagg 177  Q
    |||||||| |||||||| | ||||||||||  ||||| ||||| || | |||| || |||| |||||||||||||  |||  |||||||||| |||||||    
T  29437539 gtaattcagttttatcctaaatcatgcaacttcatagctgttttgagtctttt-taatgagaaatcatgtaaatcggcaagacaagacatcacgtgaagg 29437637  T
Q  178 at 179  Q
    ||    
T  29437638 at 29437639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 1673869 - 1673825
Alignment:
Q  76 ttgtaattcaattttatccaagatcatgcaacaccataggtgttt 120  Q
    ||||||||||||||||||| | |||||||||| |||||| |||||    
T  1673869 ttgtaattcaattttatcctatatcatgcaactccatagttgttt 1673825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 1676344 - 1676300
Alignment:
Q  76 ttgtaattcaattttatccaagatcatgcaacaccataggtgttt 120  Q
    ||||||||||||||||||| | |||||||||| |||||| |||||    
T  1676344 ttgtaattcaattttatcctatatcatgcaactccatagttgttt 1676300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 1682872 - 1682828
Alignment:
Q  76 ttgtaattcaattttatccaagatcatgcaacaccataggtgttt 120  Q
    ||||||||||||||||||| | |||||||||| |||||| |||||    
T  1682872 ttgtaattcaattttatcctatatcatgcaactccatagttgttt 1682828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 92 - 246
Target Start/End: Original strand, 447058 - 447212
Alignment:
Q  92 tccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaaggataaaggatgaaga 191  Q
    ||||||||||||| || ||||||| |||| || | ||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |    
T  447058 tccaagatcatgccactccataggcgttttgagtgttttgaagtgaggaatcatgtaaatcattaaatcaagacatcatgtgaaggatcaaggatgaaaa 447157  T
Q  192 actgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa 246  Q
    | ||||||||||  |||||||  ||||   |||| ||||||||||| ||||||||    
T  447158 attgaagatcaaaagttcttaacaggttactgaagacaatacaaagtgaagaaaa 447212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 71 - 246
Target Start/End: Complemental strand, 27009 - 26833
Alignment:
Q  71 agtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcat 170  Q
    |||| |||||||| | |||||||| | ||||| ||||  ||||||||||| || | ||| |||||||| |||||||||||||  ||||| |||||||||     
T  27009 agtcattgtaatttacttttatcctaaatcatacaactacataggtgttttgagtgtttagtagtgagaaatcatgtaaatcgacaaattaagacatcac 26910  T
Q  171 gtgaaggataaagg--atgaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa 246  Q
    ||||| ||| ||||  ||||| || ||||| |||| ||||||||||| ||  ||||| ||||||||||| ||||||||    
T  26909 gtgaaagatcaaggatatgaa-aattgaagttcaatggttcttagaaagttcttgaagacaatacaaagtgaagaaaa 26833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 70 - 237
Target Start/End: Original strand, 21457 - 21625
Alignment:
Q  70 gagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatca 169  Q
    |||||||||||||||| |||||||| | ||||||||||  ||||  ||||| |  | ||||| ||||||||||||||||||||  |||| |||||||| |    
T  21457 gagtcgttgtaattcacttttatcctaaatcatgcaacttcataattgttttgggtgttttgcagtgaggaatcatgtaaatcgacaaaccaagacatta 21556  T
Q  170 tgtgaaggataaaggat--gaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaag 237  Q
      |||||||| || |||  |||||  |||||||||| |||||||||||||| ||| || |||||||||||    
T  21557 catgaaggatcaatgatatgaagat-tgaagatcaatggttcttagaaggtttttaaagacaatacaaag 21625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 140 - 246
Target Start/End: Original strand, 6325 - 6431
Alignment:
Q  140 aatcatgtaaatcatcaaatcaagacatcatgtgaaggataaaggatgaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaaggg 239  Q
    |||||||||||||  ||||||||||||||| ||||||||| ||||||    || |||||| ||| ||||| |||||| | |||||| | ||||||||| |    
T  6325 aatcatgtaaatcgacaaatcaagacatcacgtgaaggatcaaggatatgaaattgaagaccaatggttcctagaagatttttgaagaaaatacaaagtg 6424  T
Q  240 aagaaaa 246  Q
    |||||||    
T  6425 aagaaaa 6431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 70 - 179
Target Start/End: Complemental strand, 13126 - 13017
Alignment:
Q  70 gagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatca 169  Q
    |||| |||| |||||| |||||||| | || ||||||| ||| |||||||| || | ||||||||||||||||||||||||||  |||||||||||||||    
T  13126 gagttgttggaattcacttttatcctaaattatgcaactccacaggtgttttgagtgttttgtagtgaggaatcatgtaaatcgacaaatcaagacatca 13027  T
Q  170 tgtgaaggat 179  Q
      ||||||||    
T  13026 catgaaggat 13017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 185
Target Start/End: Complemental strand, 8756 - 8649
Alignment:
Q  78 gtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaagg 177  Q
    |||||||| |||||||| | ||  |||||| |||||  ||||| || | ||||||||||||||||||||||||||  ||||||||||||| |  ||||||    
T  8756 gtaattcacttttatcctaaattgtgcaactccatatatgttttgaatgttttgtagtgaggaatcatgtaaatcgacaaatcaagacataaaatgaagg 8657  T
Q  178 ataaagga 185  Q
    || |||||    
T  8656 atcaagga 8649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 98 - 179
Target Start/End: Original strand, 12332 - 12413
Alignment:
Q  98 atcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaaggat 179  Q
    |||||||||| |||||||||||| || | |||||||||||| |||||||||||||  ||||||||||||||| |||||||||    
T  12332 atcatgcaactccataggtgttttgagtgttttgtagtgagaaatcatgtaaatcgacaaatcaagacatcacgtgaaggat 12413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 98 - 179
Target Start/End: Original strand, 1896 - 1977
Alignment:
Q  98 atcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaaggat 179  Q
    |||||||||| |||||||||||| ||   |||||||||||| |||| ||||||||| ||||||||||||||| |||||||||    
T  1896 atcatgcaactccataggtgttttgagagttttgtagtgagaaatcctgtaaatcaacaaatcaagacatcacgtgaaggat 1977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 246
Target Start/End: Complemental strand, 228239 - 228065
Alignment:
Q  70 gagtcgttgtaattcaattttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatcatcaaatcaagacatca 169  Q
    |||||||||||||||| |||||||  | |||||||||| | | | |||||  |  | |||| ||||||| |||||||||||||  |||||||||||||||    
T  228239 gagtcgttgtaattcatttttatcataaatcatgcaaccctaaaagtgtt--gtatgttttatagtgagaaatcatgtaaatcgacaaatcaagacatca 228142  T
Q  170 tgtgaaggat--aaaggatgaagaactgaagatcaagggttcttagaaggtgtttgaatacaatacaaagggaagaaaa 246  Q
     |||||||||  |  | |||||  | |||||| ||| |||||||||||||| |||||| ||||||||||| ||||||||    
T  228141 cgtgaaggatcgagtgtatgaa-tattgaaga-caatggttcttagaaggtatttgaagacaatacaaagtgaagaaaa 228065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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