View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20688_low_23 (Length: 311)

Name: NF20688_low_23
Description: NF20688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20688_low_23
NF20688_low_23
[»] chr1 (8 HSPs)
chr1 (3-296)||(9163961-9164254)
chr1 (7-296)||(9220300-9220589)
chr1 (29-296)||(9157872-9158139)
chr1 (22-296)||(9114323-9114597)
chr1 (42-269)||(9175842-9176069)
chr1 (42-256)||(9202871-9203085)
chr1 (123-197)||(1840311-1840385)
chr1 (133-197)||(1866244-1866308)


Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 3 - 296
Target Start/End: Original strand, 9163961 - 9164254
Alignment:
Q  3 caaaggaagcaccttatagggaaatatatccaaatgatcaacagtgaaattataaaatccatctttaacaacaaatgaataactacaccctaaagaatcc 102  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9163961 caaaggaagcatcttatagggaaatatatccaaatgatcaacagtgaaattataaaatccatctttaacaacaaatgaataactacaccctaaagaatcc 9164060  T
Q  103 gtggaattaggaaaatcaaaagcttgtacacttatattcctcatcataggtggaatatcaacttgacaacaaccaatacccgaacatgttccattttcga 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9164061 gtggaattaggaaaatcaaaagcttgtacacttatattcctcatcataggtggaatatcaacttgacaacaaccaatacccgaacatgttccattttcga 9164160  T
Q  203 ttcgatttcgattaccgttacatcttgttaagcaaccggttgaatatgtttcttgattgtaaatgctgttgagataaccataactatcacaacc 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9164161 ttcgatttcgattaccgttacatcttgttaagcaaccggttgaatatgtttcttgattgtaaatgctgttgagataaccataactatcacaacc 9164254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 7 - 296
Target Start/End: Original strand, 9220300 - 9220589
Alignment:
Q  7 ggaagcaccttatagggaaatatatccaaatgatcaacagtgaaattataaaatccatctttaacaacaaatgaataactacaccctaaagaatccgtgg 106  Q
    ||||||| |||||| |||||  |||||||||||  |||||| ||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||    
T  9220300 ggaagcatcttataaggaaaattatccaaatgagaaacagtaaaattataggatccatctttaacaacaaatgaataactacaccccaaagaatccgtgg 9220399  T
Q  107 aattaggaaaatcaaaagcttgtacacttatattcctcatcataggtggaatatcaacttgacaacaaccaatacccgaacatgttccattttcgattcg 206  Q
    |||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |    
T  9220400 aattaggaaaatcagaaacttgtacacttatattcctcatcatatgtggaatatcaacttgacaacaaccaatacccgaacatgttccgttttcaatttg 9220499  T
Q  207 atttcgattaccgttacatcttgttaagcaaccggttgaatatgtttcttgattgtaaatgctgttgagataaccataactatcacaacc 296  Q
    ||| |||||||| | |||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||| ||||| ||||||||    
T  9220500 attccgattaccataacatcttgttaagcaaccggttgaatatgtttcttcgttgtaaatactgttgagataaccgtaactgtcacaacc 9220589  T

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Target: chr1; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 29 - 296
Target Start/End: Original strand, 9157872 - 9158139
Alignment:
Q  29 tatccaaatgatcaacagtgaaattataaaatccatctttaacaacaaatgaataactacaccctaaagaatccgtggaattaggaaaatcaaaagcttg 128  Q
    |||||||||||  || ||  ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||     
T  9157872 tatccaaatgagaaatagaaaaattataaaacccatctttaacaacaaatgaataactacaccccaaagaatccgtggaattaggaaaatcagaagcttc 9157971  T
Q  129 tacacttatattcctcatcataggtggaatatcaacttgacaacaaccaatacccgaacatgttccattttcgattcgatttcgattaccgttacatctt 228  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||  ||||||||||| |||||||||    
T  9157972 tatacttatattcctcatcataggtggaatatcaacttgacaacaaccaatacccgaacatgttccgttttctattctgtttcgattaccattacatctt 9158071  T
Q  229 gttaagcaaccggttgaatatgtttcttgattgtaaatgctgttgagataaccataactatcacaacc 296  Q
    || | |||||||||||||||||||||||  ||||| |  |||||||||||||| ||||| ||||||||    
T  9158072 gtcaggcaaccggttgaatatgtttctttgttgtatacactgttgagataaccgtaactgtcacaacc 9158139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 22 - 296
Target Start/End: Complemental strand, 9114597 - 9114323
Alignment:
Q  22 ggaaatatatccaaatgatcaacagtgaaattataaaatccatctttaacaacaaatgaataactacaccctaaagaatccgtggaattaggaaaatcaa 121  Q
    |||||| | |||||||||  |||||  |||||||||  ||||| |||||||||||| ||||| ||||| |  ||||| ||  ||||||||  |||| |||    
T  9114597 ggaaatttgtccaaatgagaaacagaaaaattataagctccatttttaacaacaaaagaatatctacatctcaaagattcattggaattaaaaaaagcaa 9114498  T
Q  122 aagcttgtacacttatattcctcatcataggtggaatatcaacttgacaacaaccaatacccgaacatgttccattttcgattcgatttcgattaccgtt 221  Q
    |||||| || | |||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||  ||||||||||||||    
T  9114497 aagcttctatagttatattcctcatcttaggtggaatatcaacttcacaacaaccaataccagaacatgttccattttcaattctctttcgattaccgtt 9114398  T
Q  222 acatcttgttaagcaaccggttgaatatgtttcttgattgtaaatgctgttgagataaccataactatcacaacc 296  Q
    |||| |||||||||||||| | ||||||||||| |  | ||||||||||||||||  ||| ||||||||||||||    
T  9114397 acatattgttaagcaaccgatggaatatgtttccttgtcgtaaatgctgttgagaataccgtaactatcacaacc 9114323  T

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Target: chr1; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 42 - 269
Target Start/End: Original strand, 9175842 - 9176069
Alignment:
Q  42 aacagtgaaattataaaatccatctttaacaacaaatgaataactacaccctaaagaatccgtggaattaggaaaatcaaaagcttgtacacttatattc 141  Q
    ||||||||||||||||||||||| |||||||||||| ||||  ||||| || ||||| ||  |  |||   || ||| | ||||||||| | ||||||||    
T  9175842 aacagtgaaattataaaatccatttttaacaacaaacgaattgctacatcccaaagattcgtttaaatcgagataattagaagcttgtatagttatattc 9175941  T
Q  142 ctcatcataggtggaatatcaacttgacaacaaccaatacccgaacatgttccattttcgattcgatttcgattaccgttacatcttgttaagcaaccgg 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||  |||||| ||||||| ||| |||||||||| ||||    
T  9175942 ctcatcataggtggaatatcaacttgacaacaaccaatacccgaacatgctccgttttcaattctgtttcgagtaccgttgcatattgttaagcagccgg 9176041  T
Q  242 ttgaatatgtttcttgattgtaaatgct 269  Q
    |  ||||| ||||||  | |||||||||    
T  9176042 tgtaatatctttctttgtcgtaaatgct 9176069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 42 - 256
Target Start/End: Original strand, 9202871 - 9203085
Alignment:
Q  42 aacagtgaaattataaaatccatctttaacaacaaatgaataactacaccctaaagaatccgtggaattaggaaaatcaaaagcttgtacacttatattc 141  Q
    ||||| ||||||||||||||||| |||||||||||| ||||  ||||| || ||||| ||  |  |||   || ||| | ||| ||||| | ||||||||    
T  9202871 aacagagaaattataaaatccatttttaacaacaaacgaattgctacatcccaaagattcgtttaaatcgagataattagaagattgtatagttatattc 9202970  T
Q  142 ctcatcataggtggaatatcaacttgacaacaaccaatacccgaacatgttccattttcgattcgatttcgattaccgttacatcttgttaagcaaccgg 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||  |||||| ||||||  ||| |||||||||||||||    
T  9202971 ctcatcataggtggaatatcaacttgacaacaaccaatacccgaacatgctccgttttcgattctgtttcgagtaccgtcgcatattgttaagcaaccgg 9203070  T
Q  242 ttgaatatgtttctt 256  Q
    |  || |||||||||    
T  9203071 tgtaaaatgtttctt 9203085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 123 - 197
Target Start/End: Complemental strand, 1840385 - 1840311
Alignment:
Q  123 agcttgtacacttatattcctcatcataggtggaatatcaacttgacaacaaccaatacccgaacatgttccatt 197  Q
    |||||||| ||||||||  |||||  |||| |||||||||||||| ||||| || ||||||||||||||||||||    
T  1840385 agcttgtatacttatatatctcattctaggaggaatatcaacttggcaacaccctatacccgaacatgttccatt 1840311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 1866308 - 1866244
Alignment:
Q  133 cttatattcctcatcataggtggaatatcaacttgacaacaaccaatacccgaacatgttccatt 197  Q
    |||||||||| |||  |||| |||||||||||||| || || || ||||||||||||||| ||||    
T  1866308 cttatattccacattttaggaggaatatcaacttggcagcaccctatacccgaacatgtttcatt 1866244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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