View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20688_low_25 (Length: 293)
Name: NF20688_low_25
Description: NF20688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20688_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 2 - 281
Target Start/End: Original strand, 37311329 - 37311608
Alignment:
| Q |
2 |
gcatgtcgaagaatatcttgaacaacattaagtagaggtctaacattaacatgttcttcaattggagcatgagtggcgcggatttgttttgtcataatcg |
101 |
Q |
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| T |
37311329 |
gcatggcgaaaaatgtcttgaacaacattaagtagaggtctaacatcaacatgttcttcaattggagcatgagtggcgcggatttgttttgtcataatcg |
37311428 |
T |
|
| Q |
102 |
tatcatctgatgccgaaaacatgtggcgcatagctctagattggttcttccgtggtaccatttccattttttgatcaaataataatggttaagatcactg |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
37311429 |
tatcatctgatgccgaaaacatgtggcgcatagctctagattggttcttccgtggtaccatttccatttttttatcaaataataatggttaagatcactg |
37311528 |
T |
|
| Q |
202 |
gttcaccacaactgggttaattcgactagtgttagttagctagttgtacgcagaatgcaatatatatagtgaaattgatg |
281 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37311529 |
gttaaccacaactgggttaattcgactagtgttagttagctagttgtacgcagaatgcaatatatatagtgaaatagatg |
37311608 |
T |
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