View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20688_low_27 (Length: 276)
Name: NF20688_low_27
Description: NF20688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20688_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 269
Target Start/End: Original strand, 29280448 - 29280700
Alignment:
| Q |
17 |
aactttgtcccctccaaatgcaacacaaagcttcttcaaacacttgattccaaattcatacacatcatcaaccttttcattctcaccatctacacctttt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29280448 |
aactttgtcccctccaaatgcaacacaaagcttcttcaaacacttgattccaaattcatacacatcatcaaccttttcattctcaccatctacacctttt |
29280547 |
T |
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| Q |
117 |
cttttttcttcttccgatccacgatcaccaaaaccagcaccattaccgtcctctttaacagacaaaaccaacgacttcatcggaatgataaataacctaa |
216 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29280548 |
cttttttcttcttccgatccacaatcaccaaaaccagcaccattaccgtcctctttaacagacaaaaccaacgacttcatcggaatgataaataacctaa |
29280647 |
T |
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| Q |
217 |
ccaaagtctcatgaggcaaagacatcagcatctgttcccattccttcatctca |
269 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
29280648 |
ccaaagtctcatgaggcaaagacatcagcatctgttcacattccttcaactca |
29280700 |
T |
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