View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20688_low_29 (Length: 265)
Name: NF20688_low_29
Description: NF20688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20688_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 13 - 164
Target Start/End: Complemental strand, 14492702 - 14492551
Alignment:
| Q |
13 |
aaaatctgtaatgtttgattaatatagagtagctatatgtataatttgttctcaaacttttgatgttattcctagttgtattgaaattattatttagata |
112 |
Q |
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| T |
14492702 |
aaaatctgtaatgtttgattaatatagagtagctacatgtataatttgttctcaaacttttgatgttattcctaattgtattgaaattattattgagata |
14492603 |
T |
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| Q |
113 |
tgatatgacataagtttgttactttaaaaaatgtatagaaaatagtgaaaac |
164 |
Q |
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| T |
14492602 |
tgatatgacataagtttgttacttaaaaaactgtatagaaaatagtgaaaac |
14492551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 167
Target Start/End: Original strand, 14462237 - 14462398
Alignment:
| Q |
13 |
aaaatctgtaatgtttgattaatatagagtagctatatgtataatttgttctcaaacttttgatgttattcctagtt--gtattgaaattattatttaga |
110 |
Q |
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| T |
14462237 |
aaaatatgtaatgtttgattaatataaaatagctacatgtatcggttgttctcaaacttctcatgttattcctactttattgttgaaattattattgaga |
14462336 |
T |
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| Q |
111 |
tatgatatgacataagtttgttacttt-----aaaaaatgtatagaaaatagtgaaaaccta |
167 |
Q |
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| T |
14462337 |
aatgatatgacataagtttgttcctttgaaaaaaaaaaagtatagaatatagtgagaaccta |
14462398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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