View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20688_low_34 (Length: 240)
Name: NF20688_low_34
Description: NF20688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20688_low_34 |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 38462210 - 38462432
Alignment:
| Q |
17 |
catattcgacatgtagaagtattgaaagatctttgtccattccttattccannnnnnnnnnccttcctgcatataaaggcaaggtcatggctttcctcac |
116 |
Q |
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| T |
38462210 |
catattcgacatgtagaagtattgaaagatctttgtacattccttattccattttttttt-ccttcctgcatataaaggcaaggtcatggctttcctcac |
38462308 |
T |
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| Q |
117 |
tctgagaaggtgtacagaaaagttgactctgtaatcgcagatctttgtcatgactgtgccagacgcatgttccatgttgttgtctaacaacggagaccct |
216 |
Q |
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| T |
38462309 |
tctgagaaggtgtacagaaaagttgactctgtaatcggagatctttgtcatgactgtgccagacgcatgttccaagttgttgtctaacaacggagaccct |
38462408 |
T |
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| Q |
217 |
ataataaggtaacactgaatgatc |
240 |
Q |
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| T |
38462409 |
ataataaggtaacactgaatgatc |
38462432 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 52091811 - 52091761
Alignment:
| Q |
17 |
catattcgacatgtagaagtattgaaagatctttgtccattccttattcca |
67 |
Q |
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| T |
52091811 |
catatttgatatgtagaagtattgaacgatctttgcacattccttattcca |
52091761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 48754091 - 48754139
Alignment:
| Q |
192 |
gttgttgtctaacaacggagaccctataataaggtaacactgaatgatc |
240 |
Q |
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| T |
48754091 |
gttgttgtctaacaatggagaccctacaataacgtaagattgaatgatc |
48754139 |
T |
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